Wall clock time and date at job start Tue Mar 31 2020 10:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38363 * 119.46117 * 2 1 4 4 C 1.38358 * 119.29997 * 180.02562 * 3 2 1 5 5 C 1.40018 * 118.29082 * 0.02562 * 4 3 2 6 6 C 1.47842 * 120.55657 * 179.97438 * 5 4 3 7 7 O 1.21553 * 120.00020 * 141.02173 * 6 5 4 8 8 N 1.34782 * 120.00025 * 321.02467 * 6 5 4 9 9 C 1.47145 * 121.21262 * 174.14850 * 8 6 5 10 10 C 1.52840 * 107.97814 * 122.69385 * 9 8 6 11 11 C 1.53090 * 110.54012 * 57.36927 * 10 9 8 12 12 H 1.09000 * 112.49461 * 70.52658 * 11 10 9 13 13 C 1.56117 * 106.34733 * 195.42202 * 11 10 9 14 14 C 1.54500 * 102.62350 * 78.37130 * 13 11 10 15 15 N 1.47438 * 107.14955 * 22.83357 * 14 13 11 16 16 C 1.36929 * 126.06210 * 181.64902 * 15 14 13 17 17 H 1.08003 * 119.99952 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00100 * 359.97417 * 16 15 14 19 19 N 1.31616 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00204 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47190 * 90.00005 * 20 18 16 22 22 H 1.48501 * 109.47455 * 210.00228 * 20 18 16 23 23 H 1.48503 * 109.46921 * 330.00099 * 20 18 16 24 24 C 1.46474 * 107.87690 * 1.62914 * 15 14 13 25 25 H 1.08992 * 108.42047 * 89.23660 * 24 15 14 26 26 C 1.46750 * 121.21375 * 354.12255 * 8 6 5 27 27 C 1.39515 * 118.88369 * 0.24880 * 5 4 3 28 28 N 1.31692 * 120.56622 * 359.50474 * 27 5 4 29 29 H 1.08997 * 109.47017 * 89.99976 * 1 2 3 30 30 H 1.09000 * 109.46774 * 210.00287 * 1 2 3 31 31 H 1.08998 * 109.46837 * 329.99463 * 1 2 3 32 32 H 1.07997 * 120.34289 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.84650 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.76503 * 3.07532 * 9 8 6 35 35 H 1.09001 * 109.76189 * 242.31624 * 9 8 6 36 36 H 1.09007 * 109.25607 * 177.63228 * 10 9 8 37 37 H 1.09000 * 109.25549 * 297.10135 * 10 9 8 38 38 H 1.08999 * 110.78291 * 320.07674 * 13 11 10 39 39 H 1.09005 * 110.92756 * 196.72718 * 13 11 10 40 40 H 1.09005 * 109.89963 * 263.45492 * 14 13 11 41 41 H 1.09001 * 110.05279 * 142.29859 * 14 13 11 42 42 H 0.96996 * 120.00426 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.23009 * 352.85355 * 26 8 6 44 44 H 1.08996 * 109.22892 * 112.22000 * 26 8 6 45 45 H 1.08002 * 119.72028 * 179.74731 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0016 6 6 5.7083 -0.0966 -0.0028 7 8 6.2814 -0.9402 0.6585 8 7 6.4195 0.7818 -0.7371 9 6 7.8882 0.8271 -0.6602 10 6 8.4414 0.6079 -2.0680 11 6 7.8889 1.6610 -3.0321 12 1 8.2972 2.6539 -2.8438 13 6 8.1758 1.1315 -4.4725 14 6 7.0632 0.0785 -4.6730 15 7 5.9685 0.4208 -3.7465 16 6 4.8030 -0.2788 -3.5823 17 1 4.0642 0.0617 -2.8719 18 6 4.5709 -1.4258 -4.3291 19 7 5.4713 -1.8411 -5.1945 20 14 2.9805 -2.3799 -4.1057 21 1 1.9552 -1.8600 -5.0456 22 1 3.2229 -3.8183 -4.3837 23 1 2.4992 -2.2198 -2.7100 24 6 6.3491 1.6418 -3.0324 25 1 6.0044 2.4998 -3.6094 26 6 5.7573 1.7276 -1.6430 27 6 3.4716 -1.2042 -0.0074 28 7 2.1559 -1.1486 -0.0020 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6443 2.1381 -0.0004 33 1 4.1275 2.1265 -0.0001 34 1 8.2470 0.0402 0.0033 35 1 8.2079 1.7997 -0.2859 36 1 9.5288 0.6794 -2.0422 37 1 8.1546 -0.3843 -2.4164 38 1 9.1610 0.6682 -4.5252 39 1 8.0871 1.9324 -5.2066 40 1 7.4471 -0.9154 -4.4426 41 1 6.7019 0.1075 -5.7010 42 1 5.3091 -2.6423 -5.7166 43 1 4.6937 1.4940 -1.6910 44 1 5.8848 2.7402 -1.2605 45 1 3.9669 -2.1640 -0.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041942780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:50 Heat of formation + Delta-G solvation = 37.750482 kcal Electronic energy + Delta-G solvation = -28255.284120 eV Core-core repulsion = 24659.605613 eV Total energy + Delta-G solvation = -3595.678507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63429 -39.39371 -37.96994 -34.92807 -33.54586 -32.59340 -32.17842 -31.13676 -29.17222 -28.57147 -27.71542 -24.80191 -24.12247 -23.63900 -22.58183 -22.03693 -20.12004 -19.94635 -18.54694 -17.17040 -16.72643 -16.17828 -15.93965 -15.53261 -15.07999 -14.63749 -14.45522 -14.23160 -14.01116 -13.97678 -13.51258 -13.17764 -12.91061 -12.79100 -12.64891 -12.28208 -12.22642 -11.99531 -11.85770 -11.59439 -11.50628 -11.25422 -10.90870 -10.82329 -10.72990 -10.24759 -10.00004 -9.85383 -9.77448 -9.69354 -9.58253 -9.45353 -9.14468 -8.71379 -8.59365 -8.18977 -6.83073 -5.71589 -3.04307 1.00322 1.41984 3.05379 3.38969 3.41037 3.49357 3.53917 4.04496 4.41704 4.50286 4.75301 4.82042 4.96050 5.04110 5.16258 5.24930 5.33268 5.46625 5.47509 5.54168 5.57770 5.62008 5.69086 5.72640 5.75825 5.85420 5.90527 5.95263 6.01226 6.10456 6.15046 6.19820 6.25936 6.27136 6.33840 6.53172 6.62097 6.63399 6.80403 6.95537 6.99756 7.52568 7.60533 7.77694 7.81118 8.15954 8.23721 8.51839 9.19593 9.82203 10.48285 11.40172 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.007305 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.648740 B = 3832.329110 C = 5228.134237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.140 3.860 3 C -0.182 4.182 4 C -0.044 4.044 5 C -0.170 4.170 6 C 0.579 3.421 7 O -0.548 6.548 8 N -0.586 5.586 9 C 0.117 3.883 10 C -0.122 4.122 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.143 4.143 14 C 0.178 3.822 15 N -0.588 5.588 16 C -0.220 4.220 17 H 0.072 0.928 18 C -0.001 4.001 19 N -0.918 5.918 20 Si 0.891 3.109 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.267 1.267 24 C 0.153 3.847 25 H 0.027 0.973 26 C 0.099 3.901 27 C 0.171 3.829 28 N -0.485 5.485 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.251 0.749 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 10.422 8.705 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.002 3.998 3 C -0.202 4.202 4 C -0.070 4.070 5 C -0.175 4.175 6 C 0.367 3.633 7 O -0.427 6.427 8 N -0.318 5.318 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.181 4.181 14 C 0.054 3.946 15 N -0.313 5.313 16 C -0.348 4.348 17 H 0.090 0.910 18 C -0.198 4.198 19 N -0.565 5.565 20 Si 0.721 3.279 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.192 1.192 24 C 0.045 3.955 25 H 0.044 0.956 26 C -0.025 4.025 27 C 0.013 3.987 28 N -0.194 5.194 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.487 8.983 8.958 12.774 hybrid contribution -0.270 0.247 -0.344 0.502 sum -1.756 9.230 8.614 12.747 Atomic orbital electron populations 1.20743 0.88940 1.03249 1.03295 1.21451 0.97117 0.88511 0.92691 1.21799 0.94422 0.99271 1.04700 1.21765 0.94543 0.97338 0.93363 1.20807 0.94680 0.95409 1.06596 1.17909 0.86176 0.80239 0.78977 1.90728 1.71626 1.35698 1.44607 1.47693 1.06844 1.35976 1.41240 1.21535 0.79294 1.01574 0.98154 1.21833 0.98807 1.01364 0.94043 1.22410 0.96581 0.97336 0.95856 0.90621 1.23157 0.99946 0.99786 0.95204 1.21216 0.85251 0.94213 0.93930 1.44235 1.17780 1.26018 1.43308 1.18773 0.93006 1.04370 1.18680 0.91021 1.24691 0.98031 0.98208 0.98864 1.69940 1.33887 1.25162 1.27555 0.86393 0.83200 0.79588 0.78685 1.21883 1.21751 1.19159 1.20686 0.92233 0.91807 0.90808 0.95560 1.21898 0.99185 0.90870 0.90548 1.22765 0.88495 0.97815 0.89614 1.67573 1.09616 1.28933 1.13251 0.90150 0.90465 0.90739 0.84526 0.84330 0.89483 0.91947 0.92018 0.90059 0.92265 0.92753 0.93661 0.94054 0.93850 0.88814 0.92317 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.16 36.01 0.37 -0.80 16 2 C 0.14 2.11 6.78 -82.51 -0.56 1.55 16 3 C -0.18 -2.43 9.72 -39.49 -0.38 -2.81 16 4 C -0.04 -0.64 7.54 -38.87 -0.29 -0.94 16 5 C -0.17 -3.07 5.08 -104.82 -0.53 -3.60 16 6 C 0.58 11.29 7.37 -12.33 -0.09 11.20 16 7 O -0.55 -12.06 16.41 5.32 0.09 -11.97 16 8 N -0.59 -10.25 2.97 -175.21 -0.52 -10.77 16 9 C 0.12 1.81 6.44 -3.77 -0.02 1.79 16 10 C -0.12 -1.99 5.04 -26.77 -0.13 -2.12 16 11 C -0.10 -1.64 3.68 -88.39 -0.33 -1.97 16 12 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.14 -2.53 6.33 -24.27 -0.15 -2.69 16 14 C 0.18 4.17 4.62 -2.74 -0.01 4.15 16 15 N -0.59 -13.88 3.20 -164.42 -0.53 -14.41 16 16 C -0.22 -5.78 9.70 -15.06 -0.15 -5.93 16 17 H 0.07 1.85 6.41 -52.48 -0.34 1.52 16 18 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 19 N -0.92 -26.81 10.38 55.49 0.58 -26.23 16 20 Si 0.89 22.42 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 2.86 2.97 -68.30 -0.20 2.66 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 C 0.10 1.62 4.16 -4.78 -0.02 1.60 16 27 C 0.17 3.29 10.81 -17.14 -0.19 3.10 16 28 N -0.48 -8.88 10.25 -9.14 -0.09 -8.97 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.14 1.68 6.54 -52.49 -0.34 1.33 16 34 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.67 6.85 -51.93 -0.36 1.32 16 38 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.20 7.04 -51.93 -0.37 0.83 16 41 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.09 1.65 3.25 -51.93 -0.17 1.48 16 44 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.16 3.13 8.06 -52.49 -0.42 2.71 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -32.66 350.23 -9.54 -42.20 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.52 Total: 2.41 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.79 Total: 5.07 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.56 Total: -60.38 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.66 -9.54 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041942780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.946 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds