Wall clock time and date at job start Tue Mar 31 2020 11:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31689 * 119.71958 * 2 1 4 4 C 1.31932 * 121.87950 * 180.24483 * 3 2 1 5 5 C 1.38352 * 121.07885 * 359.77497 * 4 3 2 6 6 C 1.38357 * 119.30237 * 359.97327 * 5 4 3 7 7 C 1.39526 * 119.71388 * 179.75313 * 2 1 3 8 8 C 1.47845 * 120.55875 * 0.02562 * 7 2 1 9 9 O 1.21543 * 119.99673 * 304.46707 * 8 7 2 10 10 N 1.34779 * 119.99722 * 124.47022 * 8 7 2 11 11 C 1.47153 * 121.22490 * 4.11774 * 10 8 7 12 12 C 1.52834 * 107.97552 * 122.72407 * 11 10 8 13 13 C 1.53085 * 110.58350 * 57.34652 * 12 11 10 14 14 H 1.09003 * 112.49300 * 70.57760 * 13 12 11 15 15 C 1.56495 * 106.41563 * 195.41332 * 13 12 11 16 16 C 1.54496 * 102.39908 * 78.36593 * 15 13 12 17 17 N 1.47430 * 107.30393 * 22.90833 * 16 15 13 18 18 C 1.36942 * 126.05970 * 181.52180 * 17 16 15 19 19 H 1.07998 * 119.99267 * 175.00274 * 18 17 16 20 20 C 1.38808 * 120.00123 * 354.99990 * 18 17 16 21 21 N 1.31625 * 119.99782 * 5.05475 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 185.05595 * 20 18 17 23 23 H 1.48505 * 109.47001 * 94.99972 * 22 20 18 24 24 H 1.48502 * 109.47066 * 214.99674 * 22 20 18 25 25 H 1.48496 * 109.47063 * 334.99753 * 22 20 18 26 26 C 1.46472 * 107.87811 * 1.51586 * 17 16 15 27 27 H 1.09003 * 108.42104 * 89.26319 * 26 17 16 28 28 C 1.46762 * 121.21711 * 184.14819 * 10 8 7 29 29 H 1.09004 * 109.47069 * 265.19636 * 1 2 3 30 30 H 1.09004 * 109.47315 * 25.19138 * 1 2 3 31 31 H 1.08997 * 109.47427 * 145.19532 * 1 2 3 32 32 H 1.07999 * 119.45726 * 179.74548 * 4 3 2 33 33 H 1.07999 * 120.34462 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.85033 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.76481 * 242.34522 * 11 10 8 36 36 H 1.09006 * 109.75632 * 3.04959 * 11 10 8 37 37 H 1.09000 * 109.25121 * 177.63159 * 12 11 10 38 38 H 1.09001 * 109.25461 * 297.09095 * 12 11 10 39 39 H 1.08998 * 110.91381 * 320.14002 * 15 13 12 40 40 H 1.08997 * 110.84608 * 196.56322 * 15 13 12 41 41 H 1.09004 * 109.90549 * 263.43458 * 16 15 13 42 42 H 1.09006 * 109.90459 * 142.38117 * 16 15 13 43 43 H 0.97003 * 119.99671 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.22980 * 112.19732 * 28 10 8 45 45 H 1.09003 * 109.19310 * 352.81155 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4782 1.1934 -0.0048 5 6 4.2365 0.0362 -0.0054 6 6 3.5986 -1.1915 -0.0003 7 6 2.1985 -1.2118 0.0052 8 6 1.4654 -2.4957 0.0102 9 8 0.6464 -2.7244 0.8786 10 7 1.7053 -3.4123 -0.9483 11 6 2.7534 -3.2022 -1.9596 12 6 3.7274 -4.3773 -1.8807 13 6 2.9903 -5.7024 -2.0915 14 1 2.6536 -5.8333 -3.1199 15 6 3.9599 -6.8302 -1.6049 16 6 3.8063 -6.7600 -0.0692 17 7 2.5019 -6.1334 0.2129 18 6 1.9913 -5.8582 1.4533 19 1 1.0581 -5.3225 1.5463 20 6 2.6729 -6.2677 2.5910 21 7 3.8571 -6.8318 2.4814 22 14 1.9097 -6.0184 4.2776 23 1 1.2001 -7.2568 4.6878 24 1 2.9768 -5.7098 5.2631 25 1 0.9454 -4.8904 4.2227 26 6 1.8492 -5.8572 -1.0690 27 1 1.2628 -6.7313 -1.3523 28 6 0.9304 -4.6565 -1.0220 29 1 -0.3633 -0.0861 1.0241 30 1 -0.3634 0.9299 -0.4374 31 1 -0.3634 -0.8438 -0.5865 32 1 3.9735 2.1531 -0.0088 33 1 5.3151 0.0908 -0.0098 34 1 4.1660 -2.1105 -0.0003 35 1 2.3050 -3.1613 -2.9522 36 1 3.2813 -2.2706 -1.7551 37 1 4.4904 -4.2640 -2.6508 38 1 4.2043 -4.3838 -0.9006 39 1 4.9866 -6.6151 -1.9011 40 1 3.6434 -7.8029 -1.9812 41 1 4.6078 -6.1565 0.3568 42 1 3.8343 -7.7647 0.3529 43 1 4.3333 -7.1184 3.2764 44 1 0.3125 -4.6419 -1.9198 45 1 0.2873 -4.7306 -0.1450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042206294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:04 Heat of formation + Delta-G solvation = 37.980585 kcal Electronic energy + Delta-G solvation = -28044.527815 eV Core-core repulsion = 24448.859286 eV Total energy + Delta-G solvation = -3595.668529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78653 -39.45528 -37.87571 -35.10397 -33.06222 -32.81282 -32.52865 -31.08519 -29.23089 -28.41672 -27.67128 -25.07227 -24.46515 -23.31300 -22.60421 -22.16302 -20.12228 -19.95304 -18.38905 -17.16704 -16.84644 -16.48226 -16.17933 -15.70779 -14.98183 -14.53686 -14.38549 -14.27106 -14.00373 -13.97721 -13.46553 -13.29828 -12.96548 -12.84102 -12.57018 -12.38952 -12.16668 -12.09493 -11.91432 -11.66868 -11.40663 -11.31025 -10.95980 -10.80031 -10.69768 -10.10176 -9.94344 -9.89816 -9.87525 -9.72519 -9.61725 -9.49092 -9.23482 -8.91388 -8.52227 -8.17411 -6.76632 -5.65027 -2.96401 0.84740 1.17937 3.03318 3.32830 3.47373 3.53295 3.60343 3.73252 4.23077 4.58001 4.62533 4.74604 4.81170 5.02662 5.03423 5.08259 5.29853 5.40552 5.48110 5.49636 5.50655 5.62349 5.67292 5.69896 5.70321 5.75266 5.93949 5.98895 6.05637 6.08201 6.09937 6.11647 6.21982 6.27516 6.40147 6.43633 6.57699 6.59958 6.71207 6.88749 7.04553 7.58508 7.65995 7.77798 7.89654 7.92555 8.30072 8.56581 9.29557 9.90272 10.54343 11.47582 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.005902 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.045374 B = 4743.071511 C = 5689.654905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.169 3.831 3 N -0.489 5.489 4 C 0.113 3.887 5 C -0.185 4.185 6 C -0.039 4.039 7 C -0.166 4.166 8 C 0.570 3.430 9 O -0.519 6.519 10 N -0.587 5.587 11 C 0.103 3.897 12 C -0.123 4.123 13 C -0.102 4.102 14 H 0.076 0.924 15 C -0.143 4.143 16 C 0.177 3.823 17 N -0.588 5.588 18 C -0.214 4.214 19 H 0.084 0.916 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.277 1.277 26 C 0.154 3.846 27 H 0.028 0.972 28 C 0.113 3.887 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 11.016 -12.459 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.031 3.969 3 N -0.199 5.199 4 C -0.045 4.045 5 C -0.205 4.205 6 C -0.065 4.065 7 C -0.171 4.171 8 C 0.356 3.644 9 O -0.395 6.395 10 N -0.319 5.319 11 C -0.020 4.020 12 C -0.161 4.161 13 C -0.122 4.122 14 H 0.094 0.906 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.313 5.313 18 C -0.342 4.342 19 H 0.102 0.898 20 C -0.203 4.203 21 N -0.574 5.574 22 Si 0.732 3.268 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.202 1.202 26 C 0.045 3.955 27 H 0.045 0.955 28 C -0.010 4.010 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.022 11.625 -11.728 16.513 hybrid contribution 0.570 -0.824 1.005 1.419 sum 0.548 10.802 -10.722 15.230 Atomic orbital electron populations 1.20742 0.88213 1.03005 1.04024 1.21317 0.97126 0.86698 0.91747 1.67555 1.10044 1.28567 1.13716 1.22856 0.89395 0.98564 0.93636 1.22068 1.01700 0.93014 1.03672 1.21848 0.93104 0.99235 0.92359 1.20896 0.94826 0.95257 1.06161 1.17832 0.82507 0.82753 0.81322 1.90801 1.35140 1.78360 1.35173 1.47729 1.36223 1.18935 1.29021 1.21843 0.89586 0.99191 0.91395 1.21838 0.97331 0.93883 1.03055 1.22460 0.96976 0.94938 0.97792 0.90583 1.23229 0.97877 0.97122 0.99899 1.21221 0.87995 0.97967 0.87539 1.44294 1.16877 1.70554 0.99603 1.19104 1.04509 1.29409 0.81144 0.89811 1.24712 0.96919 1.01117 0.97596 1.69970 1.13029 1.47061 1.27319 0.86210 0.78330 0.77836 0.84391 1.21785 1.22034 1.20215 1.20691 0.92656 0.94032 0.88109 0.95486 1.21454 0.94272 0.82992 1.02282 0.89432 0.90557 0.90689 0.82522 0.84259 0.83839 0.91760 0.90195 0.91926 0.90200 0.92285 0.92653 0.94159 0.93791 0.94086 0.92519 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.19 36.00 0.33 -1.06 16 2 C 0.17 2.56 6.82 -82.18 -0.56 2.00 16 3 N -0.49 -6.90 10.26 -9.14 -0.09 -6.99 16 4 C 0.11 1.29 11.17 -17.47 -0.20 1.10 16 5 C -0.18 -2.08 10.10 -39.50 -0.40 -2.48 16 6 C -0.04 -0.55 7.56 -38.87 -0.29 -0.85 16 7 C -0.17 -2.69 4.98 -104.82 -0.52 -3.21 16 8 C 0.57 10.76 6.15 -12.33 -0.08 10.68 16 9 O -0.52 -11.76 15.70 5.33 0.08 -11.67 16 10 N -0.59 -10.03 2.97 -175.20 -0.52 -10.55 16 11 C 0.10 1.40 5.87 -3.77 -0.02 1.37 16 12 C -0.12 -1.79 5.05 -26.77 -0.14 -1.92 16 13 C -0.10 -1.60 3.68 -88.18 -0.32 -1.93 16 14 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.14 -2.49 6.36 -24.06 -0.15 -2.64 16 16 C 0.18 4.12 4.60 -2.75 -0.01 4.11 16 17 N -0.59 -14.23 3.20 -164.42 -0.53 -14.76 16 18 C -0.21 -5.91 9.71 -15.06 -0.15 -6.06 16 19 H 0.08 2.39 6.45 -52.49 -0.34 2.06 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.93 -27.33 10.41 55.49 0.58 -26.75 16 22 Si 0.90 23.43 29.56 -169.99 -5.02 18.41 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 25 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.15 2.96 2.97 -68.30 -0.20 2.76 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 C 0.11 2.04 5.69 -4.77 -0.03 2.01 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.03 7.18 -51.93 -0.37 0.66 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.14 2.06 7.46 -52.48 -0.39 1.67 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.00 4.46 -51.93 -0.23 0.77 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.44 6.85 -51.93 -0.36 1.09 16 39 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 1.04 7.19 -51.93 -0.37 0.67 16 42 H 0.04 1.16 7.43 -51.93 -0.39 0.78 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 2.06 5.50 -51.93 -0.29 1.78 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -33.24 348.86 -9.59 -42.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.51 Total: 0.68 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.83 Total: 3.55 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.56 Total: -59.06 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.24 -9.59 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042206294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.810 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds