Wall clock time and date at job start Tue Mar 31 2020 11:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38179 * 119.55151 * 2 1 4 4 C 1.39798 * 118.99966 * 179.97438 * 3 2 1 5 5 C 1.48142 * 120.92256 * 179.97438 * 4 3 2 6 6 O 1.21519 * 119.99987 * 33.53328 * 5 4 3 7 7 N 1.34777 * 119.99906 * 213.53289 * 5 4 3 8 8 C 1.46594 * 119.75634 * 356.15787 * 7 5 4 9 9 C 1.53891 * 110.67926 * 132.27528 * 8 7 5 10 10 C 1.51915 * 107.33290 * 51.81889 * 9 8 7 11 11 H 1.09005 * 111.55777 * 56.84839 * 10 9 8 12 12 C 1.53706 * 115.01639 * 184.56134 * 10 9 8 13 13 C 1.55300 * 101.81244 * 153.45695 * 12 10 9 14 14 N 1.48147 * 107.04656 * 337.55498 * 13 12 10 15 15 C 1.36938 * 126.40451 * 175.03083 * 14 13 12 16 16 H 1.08002 * 120.00569 * 186.91524 * 15 14 13 17 17 C 1.38815 * 119.99515 * 6.92261 * 15 14 13 18 18 N 1.31623 * 119.99830 * 354.23679 * 17 15 14 19 19 Si 1.86800 * 120.00116 * 174.24095 * 17 15 14 20 20 H 1.48505 * 109.47146 * 94.98187 * 19 17 15 21 21 H 1.48493 * 109.47337 * 214.98398 * 19 17 15 22 22 H 1.48500 * 109.46817 * 334.98854 * 19 17 15 23 23 C 1.45505 * 107.20166 * 354.99901 * 14 13 12 24 24 H 1.08997 * 109.56741 * 274.15131 * 23 14 13 25 25 C 1.47799 * 119.75244 * 176.18423 * 7 5 4 26 26 C 1.39838 * 118.15461 * 0.25482 * 4 3 2 27 27 C 1.38137 * 119.00271 * 359.48005 * 26 4 3 28 28 N 1.31797 * 119.55345 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47565 * 89.99720 * 1 2 3 30 30 H 1.09003 * 109.47198 * 209.99867 * 1 2 3 31 31 H 1.09007 * 109.47380 * 330.00026 * 1 2 3 32 32 H 1.07996 * 120.49604 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.22811 * 252.57101 * 8 7 5 34 34 H 1.09001 * 109.22863 * 11.98161 * 8 7 5 35 35 H 1.08997 * 109.89033 * 171.23252 * 9 8 7 36 36 H 1.08999 * 109.89312 * 292.34608 * 9 8 7 37 37 H 1.08990 * 110.96139 * 35.32504 * 12 10 9 38 38 H 1.08997 * 110.99129 * 271.59593 * 12 10 9 39 39 H 1.08999 * 109.91643 * 218.20411 * 13 12 10 40 40 H 1.09009 * 110.08877 * 96.99825 * 13 12 10 41 41 H 0.97000 * 119.99270 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.07102 * 350.46869 * 25 7 5 43 43 H 1.08998 * 110.06673 * 112.04411 * 25 7 5 44 44 H 1.07995 * 120.50183 * 179.72541 * 26 4 3 45 45 H 1.07993 * 119.54879 * 180.27107 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1886 0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.9287 3.4286 0.5805 7 7 5.5417 2.5183 -0.6444 8 6 6.0972 1.3151 -1.2711 9 6 6.5643 1.6161 -2.7062 10 6 7.4758 2.8297 -2.6403 11 1 8.3135 2.6651 -1.9626 12 6 7.9598 3.3537 -4.0018 13 6 8.2189 4.8532 -3.6915 14 7 7.4058 5.1973 -2.5019 15 6 7.4089 6.3924 -1.8334 16 1 6.8575 6.4965 -0.9105 17 6 8.1206 7.4702 -2.3420 18 7 8.8831 7.3134 -3.4034 19 14 7.9964 9.1431 -1.5200 20 1 9.1188 9.3084 -0.5619 21 1 8.0658 10.2082 -2.5523 22 1 6.7057 9.2423 -0.7923 23 6 6.6025 4.0284 -2.1769 24 1 5.6837 4.0424 -2.7631 25 6 6.2684 3.8035 -0.7134 26 6 4.2343 -0.0506 -0.0044 27 6 3.4740 -1.2040 0.0013 28 7 2.1570 -1.1465 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6493 2.1378 0.0004 33 1 6.9455 0.9635 -0.6838 34 1 5.3327 0.5387 -1.2979 35 1 7.1129 0.7625 -3.1043 36 1 5.7034 1.8327 -3.3386 37 1 7.1857 3.2407 -4.7607 38 1 8.8791 2.8545 -4.3079 39 1 7.9140 5.4660 -4.5397 40 1 9.2757 5.0142 -3.4782 41 1 9.3807 8.0666 -3.7585 42 1 5.6355 4.6113 -0.3460 43 1 7.1843 3.7473 -0.1252 44 1 5.3129 -0.1052 -0.0086 45 1 3.9653 -2.1657 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042276132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:23 Heat of formation + Delta-G solvation = 52.621173 kcal Electronic energy + Delta-G solvation = -26726.367539 eV Core-core repulsion = 23131.333874 eV Total energy + Delta-G solvation = -3595.033665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.12409 -39.69000 -38.20039 -35.67005 -33.54222 -32.90180 -32.63060 -31.27467 -29.46035 -28.69435 -27.86315 -25.28327 -24.67702 -23.51571 -22.66997 -22.14729 -20.29915 -19.86282 -19.27582 -17.51872 -16.76741 -16.50173 -16.31586 -15.83995 -15.20463 -14.97962 -14.64263 -14.62457 -14.35299 -14.01712 -13.74048 -13.60487 -13.15884 -13.02353 -12.84926 -12.62558 -12.54651 -12.25809 -11.94863 -11.87115 -11.60310 -11.26441 -10.99837 -10.86709 -10.75346 -10.31023 -10.18270 -10.05230 -10.00131 -9.91206 -9.70621 -9.56939 -9.46443 -9.11073 -8.64250 -8.53515 -6.87583 -5.75851 -3.08996 0.58755 0.79754 2.71129 2.94669 3.39929 3.46336 3.48867 3.53109 3.99035 4.19253 4.46281 4.49186 4.63733 4.75841 4.84494 4.92367 5.02997 5.14464 5.19249 5.31959 5.34418 5.40451 5.44545 5.54466 5.61746 5.64757 5.72878 5.75226 5.76539 5.87200 5.96237 6.02324 6.06181 6.12122 6.30817 6.34022 6.41884 6.51217 6.63412 6.69318 6.99963 7.40323 7.52852 7.57264 7.66179 7.78382 8.11693 8.20560 9.15998 9.79060 10.45958 11.37107 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.003462 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.611918 B = 8084.772260 C = 9019.496007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.124 3.876 3 C -0.120 4.120 4 C -0.072 4.072 5 C 0.552 3.448 6 O -0.529 6.529 7 N -0.593 5.593 8 C 0.077 3.923 9 C -0.119 4.119 10 C -0.115 4.115 11 H 0.077 0.923 12 C -0.138 4.138 13 C 0.177 3.823 14 N -0.591 5.591 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.919 5.919 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.156 3.844 24 H 0.024 0.976 25 C 0.116 3.884 26 C -0.166 4.166 27 C 0.100 3.900 28 N -0.475 5.475 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.252 0.748 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 -18.914 3.427 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.140 4.140 4 C -0.083 4.083 5 C 0.338 3.662 6 O -0.406 6.406 7 N -0.326 5.326 8 C -0.045 4.045 9 C -0.158 4.158 10 C -0.134 4.134 11 H 0.096 0.904 12 C -0.176 4.176 13 C 0.053 3.947 14 N -0.316 5.316 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.201 4.201 18 N -0.566 5.566 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.047 3.953 24 H 0.041 0.959 25 C -0.005 4.005 26 C -0.186 4.186 27 C -0.057 4.057 28 N -0.186 5.186 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.174 0.826 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.814 -18.879 3.697 21.596 hybrid contribution 0.727 1.719 0.277 1.887 sum -9.087 -17.159 3.974 19.819 Atomic orbital electron populations 1.20737 0.88311 1.03730 1.03359 1.21289 0.97291 0.87777 0.94954 1.22086 0.93127 1.00104 0.98708 1.20421 0.94530 0.93938 0.99378 1.18257 0.80933 0.87294 0.79679 1.90801 1.69077 1.36935 1.43796 1.48176 1.20175 1.11418 1.52809 1.22696 0.99512 0.87582 0.94727 1.21803 0.99793 0.98875 0.95332 1.22288 0.97866 0.94568 0.98721 0.90419 1.22723 0.99823 0.99490 0.95563 1.21541 0.95781 0.87980 0.89383 1.44163 1.45970 1.09234 1.32265 1.19038 1.26922 0.86190 1.03793 0.90275 1.24809 0.99468 0.98033 0.97759 1.69957 1.31901 1.30060 1.24704 0.86147 0.77812 0.83960 0.78199 1.21625 1.21617 1.20469 1.20972 0.93868 0.88032 0.92399 0.95883 1.21804 0.96306 0.83488 0.98937 1.22805 1.02533 0.92520 1.00726 1.22746 0.89182 0.98337 0.95447 1.67382 1.10333 1.29433 1.11414 0.90150 0.90274 0.90405 0.83775 0.91137 0.87886 0.90698 0.91376 0.92520 0.92190 0.93969 0.93174 0.93725 0.88794 0.90844 0.82573 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16 2 C 0.12 1.31 6.78 -82.63 -0.56 0.75 16 3 C -0.12 -1.42 9.35 -39.02 -0.36 -1.78 16 4 C -0.07 -0.90 5.51 -104.65 -0.58 -1.48 16 5 C 0.55 8.81 7.46 -12.19 -0.09 8.72 16 6 O -0.53 -10.44 16.25 5.35 0.09 -10.35 16 7 N -0.59 -9.02 3.01 -173.73 -0.52 -9.55 16 8 C 0.08 0.87 4.79 -3.53 -0.02 0.85 16 9 C -0.12 -1.47 5.71 -26.82 -0.15 -1.62 16 10 C -0.11 -1.88 2.61 -89.54 -0.23 -2.11 16 11 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 12 C -0.14 -2.44 6.54 -25.14 -0.16 -2.61 16 13 C 0.18 4.19 5.44 -1.92 -0.01 4.18 16 14 N -0.59 -14.74 3.35 -162.90 -0.55 -15.29 16 15 C -0.23 -6.37 9.89 -15.06 -0.15 -6.52 16 16 H 0.08 2.13 7.37 -52.49 -0.39 1.75 16 17 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 18 N -0.92 -26.77 10.48 55.49 0.58 -26.18 16 19 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.16 3.16 2.77 -67.82 -0.19 2.97 16 24 H 0.02 0.51 7.90 -51.93 -0.41 0.10 16 25 C 0.12 2.18 5.64 -3.94 -0.02 2.16 16 26 C -0.17 -1.60 7.51 -39.02 -0.29 -1.90 16 27 C 0.10 0.90 11.17 -17.59 -0.20 0.70 16 28 N -0.48 -5.15 10.25 -9.52 -0.10 -5.25 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.49 8.08 -51.92 -0.42 0.07 16 32 H 0.14 1.66 8.04 -52.49 -0.42 1.24 16 33 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 34 H 0.10 0.96 3.65 -52.53 -0.19 0.77 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 37 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 1.11 7.59 -51.93 -0.39 0.71 16 40 H 0.05 1.30 7.44 -51.92 -0.39 0.92 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.09 1.99 6.80 -51.93 -0.35 1.64 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.16 1.18 5.32 -52.49 -0.28 0.91 16 45 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -32.99 352.56 -9.55 -42.53 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.59 Total: -0.12 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.75 Total: 1.69 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.58 Total: -56.27 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.99 -9.55 -42.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042276132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.154 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds