Wall clock time and date at job start Tue Mar 31 2020 11:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38179 * 119.55151 * 2 1 4 4 C 1.39798 * 118.99966 * 179.97438 * 3 2 1 5 5 C 1.48142 * 120.92256 * 179.97438 * 4 3 2 6 6 O 1.21519 * 119.99987 * 33.53328 * 5 4 3 7 7 N 1.34777 * 119.99906 * 213.53289 * 5 4 3 8 8 C 1.46594 * 119.75634 * 356.15787 * 7 5 4 9 9 C 1.53891 * 110.67926 * 132.27528 * 8 7 5 10 10 C 1.51915 * 107.33290 * 51.81889 * 9 8 7 11 11 H 1.09005 * 111.55777 * 56.84839 * 10 9 8 12 12 C 1.53706 * 115.01639 * 184.56134 * 10 9 8 13 13 C 1.55300 * 101.81244 * 153.45695 * 12 10 9 14 14 N 1.48147 * 107.04656 * 337.55498 * 13 12 10 15 15 C 1.36938 * 126.40451 * 175.03083 * 14 13 12 16 16 H 1.08002 * 120.00569 * 186.91524 * 15 14 13 17 17 C 1.38815 * 119.99515 * 6.92261 * 15 14 13 18 18 N 1.31623 * 119.99830 * 354.23679 * 17 15 14 19 19 Si 1.86800 * 120.00116 * 174.24095 * 17 15 14 20 20 H 1.48505 * 109.47146 * 94.98187 * 19 17 15 21 21 H 1.48493 * 109.47337 * 214.98398 * 19 17 15 22 22 H 1.48500 * 109.46817 * 334.98854 * 19 17 15 23 23 C 1.45505 * 107.20166 * 354.99901 * 14 13 12 24 24 H 1.08997 * 109.56741 * 274.15131 * 23 14 13 25 25 C 1.47799 * 119.75244 * 176.18423 * 7 5 4 26 26 C 1.39838 * 118.15461 * 0.25482 * 4 3 2 27 27 C 1.38137 * 119.00271 * 359.48005 * 26 4 3 28 28 N 1.31797 * 119.55345 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47565 * 89.99720 * 1 2 3 30 30 H 1.09003 * 109.47198 * 209.99867 * 1 2 3 31 31 H 1.09007 * 109.47380 * 330.00026 * 1 2 3 32 32 H 1.07996 * 120.49604 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.22811 * 252.57101 * 8 7 5 34 34 H 1.09001 * 109.22863 * 11.98161 * 8 7 5 35 35 H 1.08997 * 109.89033 * 171.23252 * 9 8 7 36 36 H 1.08999 * 109.89312 * 292.34608 * 9 8 7 37 37 H 1.08990 * 110.96139 * 35.32504 * 12 10 9 38 38 H 1.08997 * 110.99129 * 271.59593 * 12 10 9 39 39 H 1.08999 * 109.91643 * 218.20411 * 13 12 10 40 40 H 1.09009 * 110.08877 * 96.99825 * 13 12 10 41 41 H 0.97000 * 119.99270 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.07102 * 350.46869 * 25 7 5 43 43 H 1.08998 * 110.06673 * 112.04411 * 25 7 5 44 44 H 1.07995 * 120.50183 * 179.72541 * 26 4 3 45 45 H 1.07993 * 119.54879 * 180.27107 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1886 0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.9287 3.4286 0.5805 7 7 5.5417 2.5183 -0.6444 8 6 6.0972 1.3151 -1.2711 9 6 6.5643 1.6161 -2.7062 10 6 7.4758 2.8297 -2.6403 11 1 8.3135 2.6651 -1.9626 12 6 7.9598 3.3537 -4.0018 13 6 8.2189 4.8532 -3.6915 14 7 7.4058 5.1973 -2.5019 15 6 7.4089 6.3924 -1.8334 16 1 6.8575 6.4965 -0.9105 17 6 8.1206 7.4702 -2.3420 18 7 8.8831 7.3134 -3.4034 19 14 7.9964 9.1431 -1.5200 20 1 9.1188 9.3084 -0.5619 21 1 8.0658 10.2082 -2.5523 22 1 6.7057 9.2423 -0.7923 23 6 6.6025 4.0284 -2.1769 24 1 5.6837 4.0424 -2.7631 25 6 6.2684 3.8035 -0.7134 26 6 4.2343 -0.0506 -0.0044 27 6 3.4740 -1.2040 0.0013 28 7 2.1570 -1.1465 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6493 2.1378 0.0004 33 1 6.9455 0.9635 -0.6838 34 1 5.3327 0.5387 -1.2979 35 1 7.1129 0.7625 -3.1043 36 1 5.7034 1.8327 -3.3386 37 1 7.1857 3.2407 -4.7607 38 1 8.8791 2.8545 -4.3079 39 1 7.9140 5.4660 -4.5397 40 1 9.2757 5.0142 -3.4782 41 1 9.3807 8.0666 -3.7585 42 1 5.6355 4.6113 -0.3460 43 1 7.1843 3.7473 -0.1252 44 1 5.3129 -0.1052 -0.0086 45 1 3.9653 -2.1657 0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042276132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:22 Heat of formation + Delta-G solvation = 31.364183 kcal Electronic energy + Delta-G solvation = -26727.289311 eV Core-core repulsion = 23131.333874 eV Total energy + Delta-G solvation = -3595.955437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15632 -40.81037 -39.60452 -37.09500 -34.85931 -34.25041 -33.43789 -32.88322 -30.93764 -30.24767 -28.65615 -26.63973 -26.36886 -24.55395 -23.89304 -23.20677 -21.84606 -21.39882 -20.49879 -18.79016 -18.33555 -17.60928 -17.26385 -17.10088 -16.75404 -16.20551 -15.91346 -15.83119 -15.60214 -15.31562 -15.11454 -14.71654 -14.44715 -14.37017 -13.98229 -13.82428 -13.57890 -13.33129 -13.16789 -13.11661 -13.05720 -12.80428 -12.69234 -12.39277 -12.18197 -12.04019 -11.77575 -11.59468 -11.45585 -11.37102 -11.07658 -10.88383 -10.74158 -10.41325 -9.89531 -9.80049 -8.92931 -7.91233 -5.25237 -0.30889 0.03860 1.41339 1.42638 1.51450 1.53902 1.78737 2.46104 2.71223 3.16911 3.28070 3.34717 3.47242 3.71001 3.76067 3.88636 3.91672 3.96361 4.01395 4.21881 4.23976 4.25833 4.40794 4.50064 4.54324 4.58824 4.67541 4.72006 4.77904 4.78449 4.84931 4.87176 4.94623 5.01939 5.08233 5.12950 5.17253 5.20445 5.31657 5.47600 5.54173 5.62837 5.65618 5.74457 6.15827 6.22569 6.89558 6.91215 7.04785 7.72872 8.40202 9.20461 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.003462 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.611918 B = 8084.772260 C = 9019.496007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.137 4.137 4 C -0.088 4.088 5 C 0.547 3.453 6 O -0.581 6.581 7 N -0.590 5.590 8 C 0.070 3.930 9 C -0.111 4.111 10 C -0.097 4.097 11 H 0.081 0.919 12 C -0.122 4.122 13 C 0.180 3.820 14 N -0.613 5.613 15 C -0.241 4.241 16 H 0.075 0.925 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.970 3.030 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.275 1.275 23 C 0.147 3.853 24 H 0.005 0.995 25 C 0.129 3.871 26 C -0.157 4.157 27 C 0.109 3.891 28 N -0.488 5.488 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.002 0.998 40 H 0.018 0.982 41 H 0.248 0.752 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -22.922 3.668 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.158 4.158 4 C -0.099 4.099 5 C 0.336 3.664 6 O -0.462 6.462 7 N -0.322 5.322 8 C -0.050 4.050 9 C -0.149 4.149 10 C -0.117 4.117 11 H 0.099 0.901 12 C -0.160 4.160 13 C 0.056 3.944 14 N -0.338 5.338 15 C -0.370 4.370 16 H 0.093 0.907 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.798 3.202 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.200 1.200 23 C 0.039 3.961 24 H 0.022 0.978 25 C 0.005 3.995 26 C -0.176 4.176 27 C -0.048 4.048 28 N -0.199 5.199 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.021 0.979 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.201 0.799 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.928 -22.946 3.934 25.310 hybrid contribution 0.714 2.929 0.206 3.021 sum -9.214 -20.018 4.140 22.422 Atomic orbital electron populations 1.20817 0.86564 1.04457 1.04247 1.21616 0.98547 0.87151 0.94145 1.22135 0.93187 1.00523 0.99963 1.20229 0.94562 0.93336 1.01783 1.18855 0.80848 0.88012 0.78669 1.90767 1.70231 1.39138 1.46066 1.48218 1.19881 1.11253 1.52824 1.23126 1.01347 0.86237 0.94262 1.21817 0.98912 0.98082 0.96099 1.22232 0.97721 0.94451 0.97248 0.90079 1.22599 1.01689 0.94923 0.96781 1.21361 0.93623 0.91796 0.87620 1.44429 1.46730 1.10046 1.32577 1.19305 1.26138 0.87741 1.03768 0.90724 1.25574 0.99750 1.01236 0.98741 1.70153 1.32766 1.30462 1.26042 0.85190 0.77868 0.79866 0.77235 1.20996 1.21735 1.20048 1.21120 0.93429 0.88354 0.93181 0.97774 1.21366 0.95754 0.84741 0.97598 1.23046 1.03857 0.91166 0.99569 1.23426 0.88570 0.99653 0.93172 1.67497 1.11465 1.29251 1.11694 0.89089 0.89568 0.89663 0.84779 0.88149 0.85066 0.86268 0.92030 0.91380 0.89295 0.97944 0.96353 0.94281 0.92504 0.90907 0.79861 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.17 71.23 0.72 -0.65 16 2 C 0.12 2.35 6.78 42.55 0.29 2.64 16 3 C -0.14 -3.17 9.35 22.63 0.21 -2.96 16 4 C -0.09 -2.10 5.51 -19.88 -0.11 -2.20 16 5 C 0.55 17.49 7.46 86.87 0.65 18.14 16 6 O -0.58 -24.14 16.25 -3.77 -0.06 -24.20 16 7 N -0.59 -17.33 3.01 -821.86 -2.47 -19.80 16 8 C 0.07 1.29 4.79 86.66 0.42 1.70 16 9 C -0.11 -2.24 5.71 30.54 0.17 -2.06 16 10 C -0.10 -2.95 2.61 -10.10 -0.03 -2.98 16 11 H 0.08 2.47 8.13 -2.38 -0.02 2.45 16 12 C -0.12 -4.13 6.54 31.62 0.21 -3.92 16 13 C 0.18 8.83 5.44 86.85 0.47 9.30 16 14 N -0.61 -31.77 3.35 -669.31 -2.24 -34.01 16 15 C -0.24 -13.84 9.89 84.03 0.83 -13.01 16 16 H 0.07 4.24 7.37 -2.91 -0.02 4.22 16 17 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 18 N -0.95 -57.47 10.48 21.65 0.23 -57.24 16 19 Si 0.97 47.28 29.56 68.60 2.03 49.31 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 C 0.15 6.04 2.77 45.60 0.13 6.17 16 24 H 0.00 0.22 7.90 -2.39 -0.02 0.20 16 25 C 0.13 4.93 5.64 85.73 0.48 5.42 16 26 C -0.16 -2.39 7.51 22.63 0.17 -2.22 16 27 C 0.11 1.46 11.17 84.67 0.95 2.41 16 28 N -0.49 -8.99 10.25 -184.04 -1.89 -10.88 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.98 8.08 -2.38 -0.02 0.96 16 32 H 0.13 3.24 8.04 -2.91 -0.02 3.22 16 33 H 0.10 1.36 8.02 -2.39 -0.02 1.34 16 34 H 0.13 1.75 3.65 -2.95 -0.01 1.74 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.38 7.97 -2.39 -0.02 1.36 16 37 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 38 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.00 0.13 7.59 -2.39 -0.02 0.11 16 40 H 0.02 0.99 7.44 -2.38 -0.02 0.97 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.06 2.58 6.80 -2.39 -0.02 2.56 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.18 1.74 5.32 -2.91 -0.02 1.72 16 45 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -78.58 352.56 2.61 -75.97 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.99 Total: 8.09 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.03 Total: 12.77 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -6.37 Total: -121.93 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.58 2.61 -75.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042276132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.333 kcal (2) G-P(sol) polarization free energy of solvation -78.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds