Wall clock time and date at job start Tue Mar 31 2020 11:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38400 * 120.85635 * 2 1 4 4 C 1.38316 * 119.30478 * 180.27482 * 3 2 1 5 5 N 1.31951 * 121.08015 * 359.72187 * 4 3 2 6 6 C 1.31669 * 121.87997 * 359.97438 * 5 4 3 7 7 C 1.39560 * 120.56683 * 0.02562 * 6 5 4 8 8 C 1.47838 * 120.56124 * 180.02562 * 7 6 5 9 9 O 1.21553 * 120.00443 * 120.80226 * 8 7 6 10 10 N 1.34782 * 119.99807 * 301.08238 * 8 7 6 11 11 C 1.44787 * 120.18054 * 4.11810 * 10 8 7 12 12 C 1.51512 * 112.22606 * 264.55591 * 11 10 8 13 13 C 1.51309 * 113.25192 * 285.36485 * 12 11 10 14 14 H 1.09003 * 111.31874 * 186.10038 * 13 12 11 15 15 C 1.54720 * 106.48602 * 307.66969 * 13 12 11 16 16 C 1.54232 * 104.37646 * 89.11628 * 15 13 12 17 17 C 1.50870 * 105.27392 * 11.56116 * 16 15 13 18 18 H 1.08996 * 106.51998 * 122.53394 * 17 16 15 19 19 C 1.49812 * 120.17973 * 183.84589 * 10 8 7 20 20 N 1.48059 * 109.90836 * 7.87245 * 17 16 15 21 21 C 1.36941 * 127.83822 * 155.19937 * 20 17 16 22 22 H 1.08002 * 119.99517 * 179.97438 * 21 20 17 23 23 C 1.38805 * 119.99960 * 359.95239 * 21 20 17 24 24 N 1.31621 * 120.00196 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99908 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47182 * 89.99956 * 25 23 21 27 27 H 1.48498 * 109.47092 * 209.99714 * 25 23 21 28 28 H 1.48500 * 109.47234 * 329.99796 * 25 23 21 29 29 H 1.08999 * 109.47100 * 274.85402 * 1 2 3 30 30 H 1.08999 * 109.47215 * 34.85400 * 1 2 3 31 31 H 1.08998 * 109.47037 * 154.85803 * 1 2 3 32 32 H 1.07999 * 120.34724 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.45744 * 179.69680 * 4 3 2 34 34 H 1.08004 * 119.71493 * 179.97438 * 6 5 4 35 35 H 1.09006 * 108.92981 * 25.26203 * 11 10 8 36 36 H 1.09001 * 108.93367 * 143.93710 * 11 10 8 37 37 H 1.09001 * 108.73113 * 46.34239 * 12 11 10 38 38 H 1.09000 * 108.72661 * 164.51759 * 12 11 10 39 39 H 1.08995 * 110.45153 * 207.84549 * 15 13 12 40 40 H 1.08996 * 110.44693 * 330.39210 * 15 13 12 41 41 H 1.08996 * 110.28104 * 130.51550 * 16 15 13 42 42 H 1.08997 * 110.28108 * 252.61025 * 16 15 13 43 43 H 1.09002 * 109.54618 * 270.55165 * 19 10 8 44 44 H 1.09006 * 109.54530 * 30.82819 * 19 10 8 45 45 H 0.97001 * 120.00194 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0058 5 7 4.2498 0.0025 -0.0058 6 6 3.6197 -1.1536 0.0001 7 6 2.2249 -1.2017 0.0062 8 6 1.5176 -2.4999 0.0134 9 8 0.7573 -2.7727 0.9217 10 7 1.7201 -3.3832 -0.9842 11 6 2.6952 -3.1035 -2.0173 12 6 2.0660 -2.4766 -3.2447 13 6 1.2865 -3.4632 -4.0864 14 1 0.9386 -3.0059 -5.0126 15 6 2.2389 -4.6500 -4.3665 16 6 2.0104 -5.6120 -3.1828 17 6 0.7800 -5.0929 -2.4806 18 1 0.0599 -5.9111 -2.4718 19 6 0.9418 -4.6626 -1.0269 20 7 0.1640 -4.0084 -3.2784 21 6 -1.1430 -3.5997 -3.2727 22 1 -1.4575 -2.7876 -3.9114 23 6 -2.0634 -4.2295 -2.4464 24 7 -1.6802 -5.2199 -1.6688 25 14 -3.8461 -3.6716 -2.4381 26 1 -4.6093 -4.4374 -3.4562 27 1 -4.4336 -3.9113 -1.0955 28 1 -3.9128 -2.2225 -2.7560 29 1 -0.3633 0.0870 1.0240 30 1 -0.3633 0.8433 -0.5873 31 1 -0.3633 -0.9303 -0.4366 32 1 1.6966 2.1345 -0.0004 33 1 4.1558 2.0763 -0.0108 34 1 4.1871 -2.0726 -0.0005 35 1 3.4474 -2.4226 -1.6186 36 1 3.1806 -4.0354 -2.3072 37 1 1.3931 -1.6807 -2.9254 38 1 2.8546 -2.0417 -3.8589 39 1 1.9772 -5.1345 -5.3071 40 1 3.2744 -4.3106 -4.3870 41 1 1.8387 -6.6249 -3.5468 42 1 2.8668 -5.5920 -2.5089 43 1 1.4766 -5.4334 -0.4720 44 1 -0.0410 -4.5065 -0.5821 45 1 -2.3235 -5.6603 -1.0916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045741845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:02 Heat of formation + Delta-G solvation = 51.059742 kcal Electronic energy + Delta-G solvation = -28523.868247 eV Core-core repulsion = 24928.766873 eV Total energy + Delta-G solvation = -3595.101374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68906 -39.41683 -37.80955 -34.38419 -33.74298 -33.02631 -31.80919 -31.04213 -29.48587 -27.96795 -27.10773 -25.88158 -24.46937 -23.65644 -22.26389 -21.90588 -19.88347 -19.29120 -18.55281 -17.18631 -16.80165 -16.35435 -16.26732 -15.55215 -14.86280 -14.82123 -14.27803 -14.18692 -13.97264 -13.76379 -13.52066 -12.87318 -12.72858 -12.58862 -12.55902 -12.44171 -12.06418 -11.85166 -11.58580 -11.49048 -11.28451 -11.22630 -10.88713 -10.83292 -10.79361 -10.22743 -9.97738 -9.90406 -9.69364 -9.55672 -9.47633 -9.33690 -9.15005 -8.87843 -8.64430 -7.78690 -6.91335 -5.73728 -3.11843 0.96410 1.26378 3.16984 3.37576 3.42674 3.45891 3.60665 3.91515 4.40724 4.44213 4.75392 4.77884 4.91329 5.11749 5.23926 5.27647 5.39961 5.47670 5.52791 5.58923 5.59528 5.66631 5.71600 5.82256 5.84719 5.92038 5.97081 6.10989 6.18804 6.24848 6.26232 6.44054 6.45239 6.46483 6.58635 6.66338 6.68959 6.77583 6.95238 7.02235 7.19949 7.47080 7.62649 7.82816 7.91430 8.19473 8.23636 8.79150 9.13649 9.73281 10.45878 11.32783 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.006307 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.744359 B = 4438.642960 C = 5455.768211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 C -0.179 4.179 4 C 0.105 3.895 5 N -0.492 5.492 6 C 0.126 3.874 7 C -0.162 4.162 8 C 0.556 3.444 9 O -0.538 6.538 10 N -0.580 5.580 11 C 0.099 3.901 12 C -0.147 4.147 13 C 0.151 3.849 14 H 0.061 0.939 15 C -0.131 4.131 16 C -0.124 4.124 17 C 0.141 3.859 18 H 0.103 0.897 19 C 0.126 3.874 20 N -0.578 5.578 21 C -0.209 4.209 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.033 0.967 44 H 0.127 0.873 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.567 7.319 -0.707 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.004 4.004 3 C -0.199 4.199 4 C -0.051 4.051 5 N -0.201 5.201 6 C -0.031 4.031 7 C -0.167 4.167 8 C 0.342 3.658 9 O -0.416 6.416 10 N -0.311 5.311 11 C -0.025 4.025 12 C -0.188 4.188 13 C 0.043 3.957 14 H 0.079 0.921 15 C -0.170 4.170 16 C -0.162 4.162 17 C 0.034 3.966 18 H 0.121 0.879 19 C 0.006 3.994 20 N -0.300 5.300 21 C -0.337 4.337 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.210 1.210 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.145 0.855 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.775 7.098 -0.156 12.904 hybrid contribution -1.723 0.445 -0.012 1.779 sum 9.053 7.543 -0.167 11.785 Atomic orbital electron populations 1.20906 0.89476 1.04294 1.03157 1.20380 0.97211 0.91424 0.91415 1.21965 0.95546 0.98455 1.03915 1.22785 0.91667 0.96240 0.94455 1.67648 1.40777 0.98262 1.13412 1.22831 0.90295 0.96320 0.93688 1.21134 0.95493 0.95189 1.04892 1.17988 0.81870 0.82968 0.82986 1.90767 1.37333 1.77626 1.35879 1.48474 1.39229 1.20503 1.22904 1.21234 0.90907 1.01367 0.89022 1.21996 0.99368 1.00245 0.97188 1.21123 0.88509 0.92367 0.93663 0.92055 1.22681 0.98632 0.97434 0.98251 1.21962 0.98491 0.98625 0.97160 1.20602 0.93358 0.94240 0.88383 0.87943 1.23425 0.97146 0.80235 0.98637 1.44936 1.03316 1.36994 1.44744 1.18960 0.82049 1.13337 1.19357 0.90457 1.24665 0.98091 0.98716 0.98907 1.69681 1.32857 1.25370 1.28810 0.86114 0.84798 0.77856 0.76982 1.21720 1.21589 1.20957 0.90038 0.91046 0.89780 0.84519 0.82715 0.82435 0.91888 0.89881 0.92568 0.92915 0.92385 0.92165 0.92190 0.92314 0.94851 0.85522 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.47 36.00 0.34 -1.59 16 2 C 0.00 0.06 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -2.22 9.82 -39.49 -0.39 -2.60 16 4 C 0.10 1.26 11.17 -17.47 -0.20 1.06 16 5 N -0.49 -6.96 10.35 -12.91 -0.13 -7.10 16 6 C 0.13 1.89 8.79 -17.13 -0.15 1.74 16 7 C -0.16 -2.77 4.99 -104.82 -0.52 -3.29 16 8 C 0.56 11.41 5.99 -12.33 -0.07 11.34 16 9 O -0.54 -13.00 16.17 5.32 0.09 -12.92 16 10 N -0.58 -11.44 2.86 -174.60 -0.50 -11.94 16 11 C 0.10 1.61 4.94 -5.71 -0.03 1.59 16 12 C -0.15 -2.50 5.01 -28.34 -0.14 -2.64 16 13 C 0.15 2.84 4.08 -66.68 -0.27 2.56 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.13 -2.08 6.02 -25.18 -0.15 -2.23 16 16 C -0.12 -2.13 5.78 -27.16 -0.16 -2.28 16 17 C 0.14 3.05 1.97 -68.41 -0.13 2.92 16 18 H 0.10 2.60 6.08 -51.93 -0.32 2.28 16 19 C 0.13 2.80 5.67 -2.47 -0.01 2.79 16 20 N -0.58 -13.32 2.69 -156.78 -0.42 -13.74 16 21 C -0.21 -5.44 10.40 -15.06 -0.16 -5.60 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 24 N -0.92 -25.09 8.14 55.49 0.45 -24.64 16 25 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.08 1.67 6.86 -51.93 -0.36 1.31 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.16 2.10 7.27 -52.48 -0.38 1.71 16 35 H 0.06 0.92 4.13 -51.93 -0.21 0.71 16 36 H 0.08 1.27 3.92 -51.93 -0.20 1.07 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.80 7.38 -51.93 -0.38 0.42 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.90 6.14 -51.93 -0.32 0.58 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.13 3.40 5.41 -51.93 -0.28 3.12 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -30.18 341.19 -9.39 -39.57 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.23 Total: 6.03 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.76 Total: 2.88 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.60 Total: -57.41 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.18 -9.39 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045741845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.628 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds