Wall clock time and date at job start Tue Mar 31 2020 11:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38360 * 120.34729 * 2 1 4 4 N 1.31922 * 121.07917 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.87841 * 359.72950 * 4 3 2 6 6 C 1.39520 * 120.56660 * 0.53910 * 5 4 3 7 7 C 1.47845 * 120.55746 * 179.75230 * 6 5 4 8 8 O 1.21552 * 119.99555 * 210.83933 * 7 6 5 9 9 N 1.35125 * 120.00243 * 30.56839 * 7 6 5 10 10 C 1.44822 * 119.81237 * 357.10088 * 9 7 6 11 11 C 1.51391 * 113.28309 * 266.40356 * 10 9 7 12 12 C 1.51190 * 114.31717 * 294.86640 * 11 10 9 13 13 H 1.09753 * 110.87714 * 179.52750 * 12 11 10 14 14 C 1.54062 * 108.49323 * 301.61668 * 12 11 10 15 15 C 1.54072 * 104.72542 * 91.55329 * 14 12 11 16 16 C 1.51969 * 105.47474 * 12.42014 * 15 14 12 17 17 H 1.09486 * 108.22961 * 122.21086 * 16 15 14 18 18 C 1.49042 * 119.99509 * 176.62728 * 9 7 6 19 19 N 1.47757 * 109.53894 * 4.78153 * 16 15 14 20 20 C 1.37056 * 127.20746 * 158.79723 * 19 16 15 21 21 H 1.08003 * 120.00052 * 180.02562 * 20 19 16 22 22 C 1.38808 * 119.99649 * 0.02562 * 20 19 16 23 23 N 1.31622 * 120.00402 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99708 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47269 * 60.00438 * 24 22 20 26 26 H 1.48501 * 109.47007 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47335 * 300.00064 * 24 22 20 28 28 C 1.38350 * 120.34828 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47052 * 270.02264 * 1 2 3 30 30 H 1.09001 * 109.47428 * 30.01746 * 1 2 3 31 31 H 1.08995 * 109.47172 * 150.02408 * 1 2 3 32 32 H 1.08003 * 119.46130 * 359.95766 * 3 2 1 33 33 H 1.08001 * 119.71802 * 180.26098 * 5 4 3 34 34 H 1.09448 * 108.34409 * 26.70307 * 10 9 7 35 35 H 1.08798 * 109.30716 * 144.31267 * 10 9 7 36 36 H 1.09276 * 108.52583 * 173.68940 * 11 10 9 37 37 H 1.09176 * 108.93659 * 56.60046 * 11 10 9 38 38 H 1.09232 * 110.73455 * 332.37456 * 14 12 11 39 39 H 1.09328 * 110.70598 * 210.50361 * 14 12 11 40 40 H 1.09096 * 110.67953 * 252.86729 * 15 14 12 41 41 H 1.09325 * 110.34104 * 131.25900 * 15 14 12 42 42 H 1.09243 * 109.57014 * 258.36451 * 18 9 7 43 43 H 1.09297 * 109.44457 * 17.59167 * 18 9 7 44 44 H 0.97002 * 119.99732 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.85722 * 0.03870 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2109 0.0005 5 6 4.2349 0.1015 0.0063 6 6 3.6054 -1.1436 0.0009 7 6 4.4024 -2.3888 0.0019 8 8 3.9711 -3.3867 -0.5418 9 7 5.6126 -2.4160 0.6024 10 6 6.1526 -1.2069 1.1889 11 6 7.0537 -0.4361 0.2477 12 6 8.3243 -1.1622 -0.1319 13 1 8.9294 -0.5580 -0.8200 14 6 9.1078 -1.4818 1.1555 15 6 8.6237 -2.8843 1.5706 16 6 7.8557 -3.4190 0.3732 17 1 8.3208 -4.3594 0.0601 18 6 6.3828 -3.6902 0.6691 19 7 7.9619 -2.4635 -0.7488 20 6 7.7751 -2.7256 -2.0811 21 1 7.8832 -1.9337 -2.8075 22 6 7.4471 -4.0088 -2.4966 23 7 7.3149 -4.9737 -1.6112 24 14 7.1932 -4.3661 -4.3125 25 1 8.4399 -4.0557 -5.0571 26 1 6.8531 -5.8005 -4.4918 27 1 6.0841 -3.5262 -4.8320 28 6 2.2060 -1.1939 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6629 2.1275 -0.0007 33 1 5.3135 0.1560 0.0108 34 1 5.3174 -0.5599 1.4747 35 1 6.7076 -1.4609 2.0896 36 1 7.3247 0.5096 0.7233 37 1 6.4987 -0.2040 -0.6634 38 1 8.8828 -0.7519 1.9364 39 1 10.1835 -1.4927 0.9607 40 1 7.9748 -2.8247 2.4455 41 1 9.4772 -3.5319 1.7884 42 1 6.2834 -4.1261 1.6659 43 1 5.9843 -4.3951 -0.0650 44 1 7.0853 -5.8703 -1.9017 45 1 1.6858 -2.1404 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045741936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:06 Heat of formation + Delta-G solvation = 67.574085 kcal Electronic energy + Delta-G solvation = -28259.817795 eV Core-core repulsion = 24665.432537 eV Total energy + Delta-G solvation = -3594.385258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77406 -39.25967 -37.69060 -34.78327 -33.44260 -32.99121 -32.19512 -31.31166 -29.38743 -27.60678 -27.22057 -25.77126 -24.47249 -23.49804 -22.50326 -21.93583 -19.89941 -19.29485 -18.35203 -17.30300 -16.98806 -16.62640 -16.11729 -15.11916 -14.92016 -14.62813 -14.37999 -14.11809 -13.88155 -13.79167 -13.18100 -13.05529 -12.86483 -12.71375 -12.52525 -12.37652 -12.17867 -12.04420 -11.65692 -11.56990 -11.24847 -11.12363 -10.82647 -10.77693 -10.70808 -10.17530 -9.90189 -9.81009 -9.63529 -9.56649 -9.55665 -9.42890 -9.00644 -8.70044 -8.61786 -7.74191 -6.84656 -5.67217 -3.04747 0.91679 1.29560 3.33621 3.44568 3.50178 3.51137 3.70216 3.98650 4.48913 4.52402 4.75768 4.83348 5.00037 5.02697 5.12363 5.22026 5.30461 5.42456 5.44066 5.49256 5.61446 5.66198 5.68352 5.70486 5.80351 5.85300 5.88590 6.04565 6.10117 6.19499 6.24727 6.27647 6.32974 6.41637 6.55811 6.66304 6.71388 6.74915 6.93849 7.01987 7.26474 7.52377 7.65451 7.86502 7.98406 8.23703 8.28804 8.89718 9.21532 9.81392 10.49911 11.40044 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.005787 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.442341 B = 4837.328504 C = 5829.080442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.152 4.152 3 C 0.105 3.895 4 N -0.487 5.487 5 C 0.087 3.913 6 C -0.166 4.166 7 C 0.556 3.444 8 O -0.532 6.532 9 N -0.572 5.572 10 C 0.103 3.897 11 C -0.164 4.164 12 C 0.157 3.843 13 H 0.060 0.940 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.154 3.846 17 H 0.106 0.894 18 C 0.114 3.886 19 N -0.578 5.578 20 C -0.217 4.217 21 H 0.076 0.924 22 C -0.001 4.001 23 N -0.915 5.915 24 Si 0.911 3.089 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.288 1.288 28 C -0.030 4.030 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.199 0.801 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.128 0.872 44 H 0.254 0.746 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 9.955 8.820 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.154 4.154 3 C -0.053 4.053 4 N -0.194 5.194 5 C -0.069 4.069 6 C -0.171 4.171 7 C 0.342 3.658 8 O -0.409 6.409 9 N -0.303 5.303 10 C -0.022 4.022 11 C -0.205 4.205 12 C 0.049 3.951 13 H 0.078 0.922 14 C -0.165 4.165 15 C -0.169 4.169 16 C 0.047 3.953 17 H 0.123 0.877 18 C -0.007 4.007 19 N -0.301 5.301 20 C -0.345 4.345 21 H 0.093 0.907 22 C -0.197 4.197 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.214 1.214 28 C -0.056 4.056 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.171 0.829 33 H 0.215 0.785 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.146 0.854 44 H 0.064 0.936 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.987 9.988 8.339 14.324 hybrid contribution -0.707 -0.843 -0.946 1.451 sum -6.695 9.146 7.394 13.533 Atomic orbital electron populations 1.20688 0.90052 1.03147 1.02460 1.20842 0.97624 0.93910 1.03042 1.22825 0.90400 0.97272 0.94757 1.67819 1.07740 1.31225 1.12662 1.24876 1.03295 0.86658 0.92079 1.21280 0.95036 0.96042 1.04759 1.18030 0.81776 0.86885 0.79104 1.90755 1.70943 1.35411 1.43811 1.47906 1.16679 1.10747 1.54936 1.21145 0.97171 0.87379 0.96465 1.22257 0.99809 0.98699 0.99706 1.20967 0.91956 0.89428 0.92778 0.92154 1.22489 0.99642 0.96826 0.97499 1.22239 0.99669 0.96375 0.98588 1.20990 0.92036 0.96682 0.85558 0.87684 1.23314 0.93486 0.83970 0.99951 1.44844 1.80812 1.02580 1.01831 1.18886 1.40591 0.94255 0.80752 0.90665 1.24619 1.01602 0.95850 0.97598 1.69648 1.54135 1.01248 1.31216 0.86200 0.77664 0.77180 0.84707 1.21415 1.21571 1.21434 1.21564 0.92621 0.98644 0.92819 0.91018 0.91207 0.91235 0.82901 0.78536 0.91415 0.90829 0.91908 0.91370 0.92219 0.92335 0.92644 0.92385 0.95452 0.85405 0.93586 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.03 36.01 0.36 -0.58 16 2 C -0.15 -1.94 5.89 -104.54 -0.62 -2.55 16 3 C 0.10 1.35 10.85 -17.47 -0.19 1.16 16 4 N -0.49 -7.55 10.35 -12.91 -0.13 -7.68 16 5 C 0.09 1.45 8.57 -17.13 -0.15 1.31 16 6 C -0.17 -3.02 5.45 -104.82 -0.57 -3.59 16 7 C 0.56 12.11 7.48 -12.17 -0.09 12.02 16 8 O -0.53 -13.67 16.25 5.32 0.09 -13.58 16 9 N -0.57 -11.67 2.63 -174.76 -0.46 -12.12 16 10 C 0.10 1.70 4.48 -5.75 -0.03 1.67 16 11 C -0.16 -2.70 3.80 -28.46 -0.11 -2.80 16 12 C 0.16 2.91 3.83 -67.18 -0.26 2.65 16 13 H 0.06 1.12 8.20 -51.50 -0.42 0.70 16 14 C -0.13 -1.97 5.99 -25.62 -0.15 -2.13 16 15 C -0.13 -2.23 5.74 -26.70 -0.15 -2.39 16 16 C 0.15 3.38 2.26 -67.94 -0.15 3.22 16 17 H 0.11 2.68 6.24 -51.65 -0.32 2.36 16 18 C 0.11 2.55 5.68 -2.81 -0.02 2.54 16 19 N -0.58 -13.48 2.40 -156.33 -0.37 -13.85 16 20 C -0.22 -5.80 10.36 -15.01 -0.16 -5.96 16 21 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 22 C 0.00 -0.02 5.49 -17.43 -0.10 -0.12 16 23 N -0.91 -25.59 8.21 55.49 0.46 -25.13 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C -0.03 -0.47 9.42 -38.87 -0.37 -0.84 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.20 3.25 1.94 -52.49 -0.10 3.14 16 34 H 0.07 1.03 4.79 -51.68 -0.25 0.78 16 35 H 0.07 1.11 5.45 -52.04 -0.28 0.83 16 36 H 0.06 0.83 8.15 -51.77 -0.42 0.41 16 37 H 0.07 1.26 6.31 -51.83 -0.33 0.93 16 38 H 0.06 0.78 7.70 -51.80 -0.40 0.38 16 39 H 0.06 0.89 8.17 -51.74 -0.42 0.47 16 40 H 0.05 0.86 6.45 -51.87 -0.33 0.52 16 41 H 0.06 0.95 8.17 -51.75 -0.42 0.53 16 42 H 0.03 0.55 7.97 -51.79 -0.41 0.14 16 43 H 0.13 3.43 5.06 -51.76 -0.26 3.17 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.14 2.11 8.00 -52.49 -0.42 1.69 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -31.47 337.17 -9.14 -40.61 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.03 Total: 5.32 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.74 Total: 3.63 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.51 Total: -58.79 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.47 -9.14 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045741936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.184 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds