Wall clock time and date at job start Tue Mar 31 2020 10:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31694 * 119.71477 * 2 1 4 4 C 1.31931 * 121.87604 * 180.24268 * 3 2 1 5 5 C 1.38348 * 121.08251 * 359.77561 * 4 3 2 6 6 C 1.38363 * 119.30308 * 359.97365 * 5 4 3 7 7 C 1.39525 * 119.71653 * 179.75459 * 2 1 3 8 8 C 1.47833 * 120.55773 * 0.02562 * 7 2 1 9 9 O 1.21551 * 120.00302 * 304.62061 * 8 7 2 10 10 N 1.34773 * 119.99970 * 124.62356 * 8 7 2 11 11 C 1.44768 * 120.03096 * 354.45693 * 10 8 7 12 12 C 1.50076 * 111.70810 * 265.14112 * 11 10 8 13 13 C 1.51754 * 112.30019 * 284.21252 * 12 11 10 14 14 H 1.08997 * 112.57228 * 188.61924 * 13 12 11 15 15 C 1.55208 * 103.55022 * 309.94853 * 13 12 11 16 16 C 1.53951 * 105.23605 * 98.14659 * 15 13 12 17 17 C 1.49964 * 105.24958 * 359.69341 * 16 15 13 18 18 H 1.08993 * 105.70774 * 130.24362 * 17 16 15 19 19 C 1.50421 * 120.03272 * 174.43454 * 10 8 7 20 20 N 1.48042 * 108.64482 * 63.98781 * 13 12 11 21 21 C 1.36943 * 127.78006 * 95.68173 * 20 13 12 22 22 H 1.07994 * 120.00265 * 0.02562 * 21 20 13 23 23 C 1.38815 * 119.99693 * 179.97438 * 21 20 13 24 24 N 1.31618 * 120.00042 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99925 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47155 * 60.00012 * 25 23 21 27 27 H 1.48498 * 109.46883 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47318 * 299.99794 * 25 23 21 29 29 H 1.08994 * 109.46844 * 275.19188 * 1 2 3 30 30 H 1.08998 * 109.46890 * 35.19363 * 1 2 3 31 31 H 1.08995 * 109.46951 * 155.18899 * 1 2 3 32 32 H 1.08006 * 119.46035 * 179.74841 * 4 3 2 33 33 H 1.08004 * 120.35293 * 180.02562 * 5 4 3 34 34 H 1.07991 * 120.85543 * 180.02562 * 6 5 4 35 35 H 1.09000 * 108.84972 * 24.95728 * 11 10 8 36 36 H 1.09001 * 108.84667 * 143.42698 * 11 10 8 37 37 H 1.08995 * 107.78692 * 164.36021 * 12 11 10 38 38 H 1.09002 * 110.33655 * 45.80146 * 12 11 10 39 39 H 1.09003 * 110.29536 * 217.08692 * 15 13 12 40 40 H 1.09005 * 110.29179 * 339.21069 * 15 13 12 41 41 H 1.09000 * 110.28905 * 118.63839 * 16 15 13 42 42 H 1.09003 * 110.29287 * 240.74595 * 16 15 13 43 43 H 1.08999 * 109.52222 * 30.71512 * 19 10 8 44 44 H 1.09001 * 109.52400 * 270.53132 * 19 10 8 45 45 H 0.96999 * 120.00611 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4782 1.1935 -0.0047 5 6 4.2366 0.0365 -0.0053 6 6 3.5988 -1.1913 -0.0003 7 6 2.1987 -1.2117 0.0052 8 6 1.4657 -2.4955 0.0101 9 8 0.6446 -2.7233 0.8770 10 7 1.7078 -3.4134 -0.9465 11 6 2.5951 -3.0974 -2.0459 12 6 1.8394 -2.6048 -3.2452 13 6 1.1433 -3.7295 -3.9891 14 1 0.7198 -3.4036 -4.9391 15 6 2.2633 -4.7870 -4.1802 16 6 2.0521 -5.8089 -3.0483 17 6 0.8666 -5.3066 -2.2794 18 1 0.1961 -6.1601 -2.1801 19 6 1.0567 -4.7675 -0.8728 20 7 0.1190 -4.3224 -3.0998 21 6 -1.2176 -4.0290 -3.0470 22 1 -1.6335 -3.2844 -3.7094 23 6 -2.0379 -4.6896 -2.1428 24 7 -1.5312 -5.5982 -1.3365 25 14 -3.8610 -4.2889 -2.0702 26 1 -4.4823 -4.5693 -3.3895 27 1 -4.5107 -5.1258 -1.0297 28 1 -4.0394 -2.8535 -1.7341 29 1 -0.3633 0.0930 1.0234 30 1 -0.3633 0.8398 -0.5923 31 1 -0.3633 -0.9328 -0.4312 32 1 3.9735 2.1533 -0.0087 33 1 5.3153 0.0909 -0.0088 34 1 4.1661 -2.1102 -0.0002 35 1 3.2862 -2.3169 -1.7275 36 1 3.1665 -3.9888 -2.3046 37 1 2.5539 -2.1286 -3.9165 38 1 1.0947 -1.8668 -2.9469 39 1 2.1634 -5.2723 -5.1511 40 1 3.2439 -4.3196 -4.0894 41 1 1.8432 -6.7949 -3.4634 42 1 2.9312 -5.8475 -2.4049 43 1 0.0873 -4.6792 -0.3824 44 1 1.6925 -5.4469 -0.3051 45 1 -2.1043 -6.0595 -0.7044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045837535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:26 Heat of formation + Delta-G solvation = 54.881586 kcal Electronic energy + Delta-G solvation = -28488.675399 eV Core-core repulsion = 24893.739752 eV Total energy + Delta-G solvation = -3594.935646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.70084 -39.47454 -37.79537 -34.45052 -33.09954 -32.84393 -32.28683 -31.50991 -29.51394 -27.87831 -26.95965 -25.80541 -24.52843 -23.64777 -22.19898 -22.00933 -19.93692 -19.28746 -18.56061 -17.09061 -16.67868 -16.53035 -16.08033 -15.58341 -14.86545 -14.76850 -14.39904 -14.08718 -14.04358 -13.71357 -13.31339 -13.15699 -12.81769 -12.53534 -12.26402 -12.20516 -12.00464 -11.94304 -11.63144 -11.54510 -11.28590 -11.07788 -10.93003 -10.79829 -10.78460 -10.21865 -9.99520 -9.78814 -9.70029 -9.64104 -9.54891 -9.50015 -9.02885 -8.80274 -8.61598 -7.75385 -6.89068 -5.70485 -3.09266 0.95624 1.22767 3.20141 3.41666 3.47071 3.48147 3.60334 3.91037 4.35581 4.47212 4.77004 4.79833 4.90083 5.08761 5.22253 5.28074 5.41283 5.49207 5.55048 5.59326 5.61834 5.65897 5.78663 5.84344 5.94627 5.95271 6.05237 6.11787 6.20770 6.21867 6.23351 6.36014 6.43228 6.45426 6.56514 6.68038 6.71038 6.80574 6.95644 7.05441 7.21911 7.50187 7.64754 7.85729 7.97876 8.21150 8.28392 8.81339 9.15880 9.76630 10.47963 11.35139 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.006130 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.170390 B = 4566.357019 C = 5592.527309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 N -0.488 5.488 4 C 0.110 3.890 5 C -0.188 4.188 6 C -0.047 4.047 7 C -0.162 4.162 8 C 0.555 3.445 9 O -0.534 6.534 10 N -0.583 5.583 11 C 0.106 3.894 12 C -0.151 4.151 13 C 0.153 3.847 14 H 0.064 0.936 15 C -0.135 4.135 16 C -0.116 4.116 17 C 0.128 3.872 18 H 0.108 0.892 19 C 0.132 3.868 20 N -0.576 5.576 21 C -0.210 4.210 22 H 0.077 0.923 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.131 0.869 44 H 0.031 0.969 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.396 6.362 -1.197 14.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.037 3.963 3 N -0.198 5.198 4 C -0.048 4.048 5 C -0.208 4.208 6 C -0.073 4.073 7 C -0.167 4.167 8 C 0.340 3.660 9 O -0.412 6.412 10 N -0.315 5.315 11 C -0.018 4.018 12 C -0.192 4.192 13 C 0.044 3.956 14 H 0.082 0.918 15 C -0.174 4.174 16 C -0.155 4.155 17 C 0.022 3.978 18 H 0.125 0.875 19 C 0.011 3.989 20 N -0.299 5.299 21 C -0.337 4.337 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.568 5.568 25 Si 0.744 3.256 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.213 1.213 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.049 0.951 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.191 6.888 -0.639 14.017 hybrid contribution -0.117 -0.421 0.016 0.437 sum 12.074 6.467 -0.623 13.711 Atomic orbital electron populations 1.20803 0.87930 1.04129 1.03545 1.21396 0.97298 0.86637 0.90970 1.67558 1.09932 1.28838 1.13456 1.22830 0.89496 0.98457 0.93986 1.21992 1.01369 0.93145 1.04297 1.21649 0.93014 0.98758 0.93895 1.21078 0.94696 0.95921 1.05016 1.17997 0.82398 0.82742 0.82847 1.90776 1.33620 1.78563 1.38198 1.48639 1.45646 1.15343 1.21851 1.20928 0.92282 1.00724 0.87833 1.21926 0.99271 1.00582 0.97431 1.21188 0.89036 0.91756 0.93593 0.91845 1.22861 0.98509 0.97576 0.98441 1.21585 0.98348 0.98385 0.97145 1.20463 0.92623 0.96144 0.88606 0.87451 1.23349 0.99097 0.77735 0.98685 1.44870 1.02849 1.43217 1.38922 1.18915 0.81146 1.17503 1.16160 0.90470 1.24653 0.98164 0.99084 0.98351 1.69613 1.33744 1.28477 1.24995 0.86161 0.84721 0.77666 0.77028 1.21390 1.21540 1.21272 0.89870 0.90649 0.89556 0.82702 0.84545 0.84486 0.92160 0.90252 0.93198 0.92331 0.92723 0.92056 0.92087 0.92604 0.85189 0.95096 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.48 36.01 0.34 -1.52 16 2 C 0.17 3.00 6.82 -82.17 -0.56 2.43 16 3 N -0.49 -7.54 10.26 -9.14 -0.09 -7.64 16 4 C 0.11 1.32 11.17 -17.47 -0.20 1.12 16 5 C -0.19 -2.06 10.10 -39.50 -0.40 -2.45 16 6 C -0.05 -0.63 7.65 -38.87 -0.30 -0.92 16 7 C -0.16 -2.77 4.90 -104.82 -0.51 -3.28 16 8 C 0.55 11.42 6.04 -12.34 -0.07 11.35 16 9 O -0.53 -13.02 15.69 5.32 0.08 -12.94 16 10 N -0.58 -11.48 2.84 -175.31 -0.50 -11.98 16 11 C 0.11 1.72 4.78 -6.42 -0.03 1.69 16 12 C -0.15 -2.59 4.93 -28.82 -0.14 -2.73 16 13 C 0.15 2.88 4.27 -66.55 -0.28 2.60 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.13 -2.12 5.92 -25.07 -0.15 -2.27 16 16 C -0.12 -1.99 5.81 -27.74 -0.16 -2.16 16 17 C 0.13 2.77 1.89 -69.01 -0.13 2.64 16 18 H 0.11 2.73 5.89 -51.93 -0.31 2.42 16 19 C 0.13 2.92 5.82 -2.43 -0.01 2.90 16 20 N -0.58 -13.40 2.65 -157.36 -0.42 -13.82 16 21 C -0.21 -5.51 10.38 -15.06 -0.16 -5.67 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 24 N -0.92 -25.24 8.10 55.49 0.45 -24.79 16 25 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.76 6.59 -51.93 -0.34 1.41 16 32 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 34 H 0.14 1.58 7.62 -52.49 -0.40 1.18 16 35 H 0.06 0.86 4.33 -51.93 -0.22 0.63 16 36 H 0.08 1.19 4.11 -51.93 -0.21 0.98 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.82 6.48 -51.93 -0.34 0.48 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.85 7.06 -51.93 -0.37 0.48 16 43 H 0.13 3.49 5.27 -51.93 -0.27 3.22 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -30.55 340.58 -9.46 -40.01 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.24 Total: 5.55 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.86 Total: 3.44 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.56 Total: -58.23 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.55 -9.46 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045837535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.895 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds