Wall clock time and date at job start Tue Mar 31 2020 11:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 110.88490 * 2 1 4 4 C 1.34774 * 120.00125 * 297.57602 * 3 2 1 5 5 O 1.21282 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.99907 * 179.97438 * 4 3 2 7 7 H 1.08996 * 110.26696 * 59.29591 * 6 4 3 8 8 C 1.54347 * 110.29366 * 181.35149 * 6 4 3 9 9 C 1.54514 * 102.32013 * 145.21403 * 8 6 4 10 10 C 1.51217 * 105.17011 * 333.82815 * 9 8 6 11 11 C 1.38745 * 130.69969 * 197.08220 * 10 9 8 12 12 C 1.38575 * 118.55962 * 179.97438 * 11 10 9 13 13 C 1.38226 * 118.98954 * 359.97438 * 12 11 10 14 14 N 1.31683 * 120.80385 * 0.02562 * 13 12 11 15 15 C 1.32301 * 122.02964 * 0.02562 * 14 13 12 16 16 C 1.55154 * 111.03901 * 123.90369 * 2 1 3 17 17 C 1.54325 * 102.94303 * 153.59308 * 16 2 1 18 18 N 1.47290 * 107.30599 * 337.81911 * 17 16 2 19 19 C 1.36938 * 125.79079 * 178.92205 * 18 17 16 20 20 H 1.08005 * 119.99558 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00146 * 0.02562 * 19 18 17 22 22 N 1.31620 * 120.00086 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47294 * 89.99594 * 23 21 19 25 25 H 1.48503 * 109.46797 * 209.99511 * 23 21 19 26 26 H 1.48500 * 109.47035 * 329.99310 * 23 21 19 27 27 C 1.47425 * 108.55742 * 358.92448 * 18 17 16 28 28 H 1.09009 * 109.46588 * 182.42343 * 1 2 3 29 29 H 1.08994 * 109.47505 * 302.42533 * 1 2 3 30 30 H 1.09001 * 109.47019 * 62.43026 * 1 2 3 31 31 H 0.97004 * 119.99804 * 117.56751 * 3 2 1 32 32 H 1.08995 * 110.82009 * 263.50096 * 8 6 4 33 33 H 1.09001 * 110.82053 * 27.05492 * 8 6 4 34 34 H 1.09000 * 110.34489 * 214.86766 * 9 8 6 35 35 H 1.09003 * 110.31625 * 92.76810 * 9 8 6 36 36 H 1.08004 * 120.72010 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.50799 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.59855 * 179.97438 * 13 12 11 39 39 H 1.09002 * 110.72290 * 271.95994 * 16 2 1 40 40 H 1.08997 * 110.72022 * 35.22766 * 16 2 1 41 41 H 1.09004 * 109.88239 * 97.22707 * 17 16 2 42 42 H 1.08995 * 109.88239 * 218.23629 * 17 16 2 43 43 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.36696 * 265.26054 * 27 18 17 45 45 H 1.08995 * 110.36608 * 143.04891 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7877 2.1910 -1.0346 5 8 1.1176 1.7977 -1.9658 6 6 2.3245 3.5991 -1.0342 7 1 3.4129 3.5883 -0.9781 8 6 1.8612 4.3489 -2.3013 9 6 1.6662 5.7900 -1.7789 10 6 1.3699 5.6394 -0.3037 11 6 0.8125 6.5298 0.6026 12 6 0.6519 6.1231 1.9176 13 6 1.0505 4.8496 2.2783 14 7 1.5759 4.0307 1.3910 15 6 1.7468 4.3817 0.1269 16 6 2.0870 -0.8078 1.2019 17 6 3.4684 -1.2731 0.6951 18 7 3.4284 -1.2418 -0.7769 19 6 4.4641 -1.5632 -1.6131 20 1 4.3312 -1.5067 -2.6835 21 6 5.6845 -1.9614 -1.0852 22 7 5.8465 -2.0297 0.2192 23 14 7.0975 -2.3991 -2.2261 24 1 7.8991 -1.1820 -2.5107 25 1 7.9597 -3.4193 -1.5772 26 1 6.5567 -2.9441 -3.4972 27 6 2.0853 -0.8061 -1.2006 28 1 -0.3633 -1.0269 0.0435 29 1 -0.3634 0.5510 0.8674 30 1 -0.3633 0.4756 -0.9110 31 1 2.5884 1.6833 0.7447 32 1 2.6295 4.3158 -3.0738 33 1 0.9206 3.9406 -2.6710 34 1 0.8278 6.2669 -2.2866 35 1 2.5764 6.3717 -1.9246 36 1 0.5104 7.5185 0.2901 37 1 0.2211 6.7906 2.6492 38 1 0.9302 4.5226 3.3006 39 1 2.1929 -0.1699 2.0794 40 1 1.4482 -1.6634 1.4207 41 1 4.2433 -0.5983 1.0589 42 1 3.6678 -2.2873 1.0412 43 1 6.6995 -2.3077 0.5881 44 1 1.4523 -1.6702 -1.4027 45 1 2.1536 -0.1718 -2.0844 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046576340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:59 Heat of formation + Delta-G solvation = 26.448523 kcal Electronic energy + Delta-G solvation = -27123.501503 eV Core-core repulsion = 23527.332907 eV Total energy + Delta-G solvation = -3596.168596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10149 -39.47356 -37.40970 -35.87681 -33.81613 -32.92976 -31.67849 -30.01930 -29.45265 -28.63599 -28.06314 -25.56982 -23.68496 -23.62318 -22.59470 -21.67005 -20.31504 -19.76779 -18.83777 -17.38840 -16.81656 -16.61891 -16.38488 -15.50837 -15.25388 -14.75525 -14.56071 -14.27434 -13.73359 -13.67581 -13.59864 -13.33766 -13.15552 -12.87440 -12.66742 -12.14843 -11.91246 -11.87718 -11.81728 -11.69511 -11.59501 -11.43661 -11.11949 -10.84375 -10.80516 -10.32203 -10.23789 -10.02462 -9.94328 -9.87331 -9.57307 -9.47856 -9.22540 -8.78416 -8.54737 -8.35543 -6.71608 -5.63668 -2.95028 0.90292 1.10515 3.01960 3.44419 3.49693 3.51771 3.51972 3.74604 3.83966 4.22937 4.56964 4.59530 4.69192 4.74399 4.95611 5.00809 5.13673 5.18232 5.34641 5.43696 5.46748 5.50211 5.57532 5.60850 5.67394 5.73475 5.84086 5.88669 5.94608 6.05826 6.12214 6.16165 6.26580 6.27616 6.45517 6.50153 6.52499 6.66219 6.80604 6.93171 7.29590 7.62801 7.65980 7.84131 7.87783 8.11389 8.33560 8.74958 9.30604 9.91167 10.58511 11.48587 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003945 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.106090 B = 7096.347311 C = 7522.807774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.158 3.842 3 N -0.686 5.686 4 C 0.530 3.470 5 O -0.543 6.543 6 C -0.064 4.064 7 H 0.120 0.880 8 C -0.101 4.101 9 C -0.079 4.079 10 C -0.143 4.143 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.105 3.895 14 N -0.470 5.470 15 C 0.131 3.869 16 C -0.146 4.146 17 C 0.178 3.822 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.924 5.924 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.131 3.869 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.404 0.596 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.042 0.958 43 H 0.250 0.750 44 H 0.023 0.977 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 18.049 3.392 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.071 3.929 3 N -0.335 5.335 4 C 0.315 3.685 5 O -0.422 6.422 6 C -0.086 4.086 7 H 0.137 0.863 8 C -0.139 4.139 9 C -0.117 4.117 10 C -0.145 4.145 11 C -0.092 4.092 12 C -0.194 4.194 13 C -0.053 4.053 14 N -0.178 5.178 15 C -0.007 4.007 16 C -0.185 4.185 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.573 5.573 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.005 3.995 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.239 0.761 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.085 16.812 3.032 20.365 hybrid contribution 0.919 0.793 -0.145 1.223 sum -10.166 17.605 2.887 20.533 Atomic orbital electron populations 1.21960 0.94679 1.01666 1.02209 1.21447 0.92375 0.81080 0.98020 1.45702 1.53493 1.12083 1.22206 1.19852 0.80209 0.86105 0.82321 1.90626 1.39884 1.76340 1.35313 1.20947 1.02214 0.92910 0.92551 0.86262 1.22299 1.04024 0.92432 0.95182 1.21051 1.02356 0.98226 0.90061 1.21452 0.99837 0.95647 0.97612 1.21046 0.96385 0.99236 0.92554 1.22075 1.02403 0.98239 0.96732 1.22649 0.94122 0.89890 0.98635 1.66815 1.12904 1.36496 1.01590 1.21449 0.95378 0.92793 0.91105 1.23205 1.00349 0.98799 0.96115 1.21171 0.90087 0.99757 0.83641 1.44500 1.07751 1.78894 1.01787 1.19066 0.89388 1.37383 0.88948 0.90623 1.24752 0.97697 1.02190 0.95969 1.69954 1.23911 1.54179 1.09227 0.86144 0.82437 0.77732 0.79649 1.21782 1.21773 1.20763 1.21880 0.87482 0.94824 0.95364 0.92091 0.93251 0.91281 0.76133 0.89335 0.88680 0.90115 0.89685 0.85053 0.84630 0.82476 0.91698 0.91088 0.93708 0.93951 0.93949 0.95941 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.59 37.16 0.32 -2.13 16 2 C 0.16 2.99 0.82 -129.67 -0.11 2.88 16 3 N -0.69 -12.33 4.96 -45.63 -0.23 -12.55 16 4 C 0.53 9.35 6.56 -10.99 -0.07 9.28 16 5 O -0.54 -10.85 12.30 5.56 0.07 -10.78 16 6 C -0.06 -0.90 3.25 -91.84 -0.30 -1.20 16 7 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 8 C -0.10 -1.17 6.35 -25.23 -0.16 -1.33 16 9 C -0.08 -0.72 6.77 -26.83 -0.18 -0.90 16 10 C -0.14 -1.57 6.16 -104.21 -0.64 -2.21 16 11 C -0.07 -0.60 10.17 -39.27 -0.40 -1.00 16 12 C -0.17 -1.50 10.12 -39.46 -0.40 -1.90 16 13 C 0.10 1.09 11.18 -17.62 -0.20 0.90 16 14 N -0.47 -6.30 9.72 -9.19 -0.09 -6.39 16 15 C 0.13 1.73 6.59 -82.03 -0.54 1.19 16 16 C -0.15 -2.77 5.99 -24.90 -0.15 -2.92 16 17 C 0.18 4.37 5.38 -2.92 -0.02 4.36 16 18 N -0.60 -15.94 3.40 -169.86 -0.58 -16.51 16 19 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 20 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.48 10.33 55.49 0.57 -26.91 16 23 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.13 3.00 6.10 -2.53 -0.02 2.99 16 28 H 0.06 0.94 8.11 -51.92 -0.42 0.52 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.24 6.53 -51.93 -0.34 0.90 16 31 H 0.40 7.01 8.03 -40.82 -0.33 6.69 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.24 7.04 -51.93 -0.37 0.88 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.06 1.10 8.05 -51.93 -0.42 0.69 16 40 H 0.07 1.26 8.02 -51.93 -0.42 0.84 16 41 H 0.04 1.20 7.39 -51.93 -0.38 0.82 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.52 8.04 -51.93 -0.42 0.10 16 45 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -33.60 357.44 -9.73 -43.33 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.74 Total: 5.66 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.11 Total: 1.12 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.32 Total: -62.36 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.60 -9.73 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046576340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.783 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds