Wall clock time and date at job start Tue Mar 31 2020 11:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.64023 * 2 1 4 4 C 1.34780 * 120.00167 * 59.29458 * 3 2 1 5 5 O 1.21280 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99967 * 180.02562 * 4 3 2 7 7 H 1.09003 * 110.88579 * 56.48419 * 6 4 3 8 8 C 1.54363 * 110.82286 * 180.02562 * 6 4 3 9 9 C 1.51221 * 105.21321 * 144.56164 * 8 6 4 10 10 C 1.38739 * 130.70116 * 162.82210 * 9 8 6 11 11 C 1.38572 * 118.56036 * 180.02562 * 10 9 8 12 12 C 1.38227 * 118.99252 * 359.96654 * 11 10 9 13 13 N 1.31693 * 120.79917 * 0.03000 * 12 11 10 14 14 C 1.32294 * 122.02902 * 359.97338 * 13 12 11 15 15 C 1.51479 * 130.13930 * 180.02562 * 14 13 12 16 16 C 1.55155 * 110.72057 * 236.85891 * 2 1 3 17 17 C 1.54907 * 101.57914 * 205.95766 * 16 2 1 18 18 N 1.47421 * 104.83723 * 37.01020 * 17 16 2 19 19 C 1.36929 * 125.65311 * 155.91165 * 18 17 16 20 20 H 1.07998 * 120.00061 * 353.89784 * 19 18 17 21 21 C 1.38820 * 120.00351 * 173.89131 * 19 18 17 22 22 N 1.31621 * 119.99613 * 6.83742 * 21 19 18 23 23 Si 1.86794 * 120.00326 * 186.83184 * 21 19 18 24 24 H 1.48498 * 109.47260 * 94.98778 * 23 21 19 25 25 H 1.48503 * 109.47056 * 214.98779 * 23 21 19 26 26 H 1.48504 * 109.46814 * 334.98676 * 23 21 19 27 27 C 1.47496 * 108.75535 * 335.89204 * 18 17 16 28 28 H 1.09001 * 109.47016 * 60.70276 * 1 2 3 29 29 H 1.09000 * 109.46870 * 180.69953 * 1 2 3 30 30 H 1.08993 * 109.47171 * 300.69966 * 1 2 3 31 31 H 0.97008 * 119.99867 * 239.30333 * 3 2 1 32 32 H 1.09008 * 110.31459 * 25.59600 * 8 6 4 33 33 H 1.08998 * 110.31361 * 263.52575 * 8 6 4 34 34 H 1.07996 * 120.72109 * 0.02562 * 10 9 8 35 35 H 1.08001 * 120.50723 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.60193 * 180.02562 * 12 11 10 37 37 H 1.08995 * 110.29529 * 316.13295 * 15 14 13 38 38 H 1.09001 * 110.29344 * 78.16840 * 15 14 13 39 39 H 1.09008 * 111.00538 * 324.02583 * 16 2 1 40 40 H 1.08994 * 111.00777 * 87.88039 * 16 2 1 41 41 H 1.09006 * 110.36568 * 155.85049 * 17 16 2 42 42 H 1.09004 * 110.36866 * 278.16620 * 17 16 2 43 43 H 0.96996 * 120.00263 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.02960 * 241.66729 * 27 18 17 45 45 H 1.08993 * 109.96315 * 120.35217 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7262 2.2117 1.0036 5 8 1.0110 1.8331 1.9069 6 6 2.2570 3.6221 1.0032 7 1 1.9791 4.1417 0.0862 8 6 1.7616 4.3951 2.2441 9 6 2.9085 5.3017 2.6309 10 6 2.9393 6.4244 3.4454 11 6 4.1483 7.0760 3.6299 12 6 5.2765 6.5861 2.9992 13 7 5.2101 5.5172 2.2328 14 6 4.0754 4.8675 2.0316 15 6 3.7905 3.6347 1.1988 16 6 2.0790 -0.7934 -1.2151 17 6 3.4652 -1.2446 -0.6913 18 7 3.2495 -1.5470 0.7354 19 6 4.0125 -2.3917 1.4965 20 1 4.7935 -2.9775 1.0348 21 6 3.7823 -2.4950 2.8615 22 7 2.7479 -1.8866 3.4023 23 14 4.9403 -3.4973 3.9309 24 1 5.9616 -2.6010 4.5298 25 1 4.1672 -4.1592 5.0123 26 1 5.6127 -4.5287 3.1005 27 6 2.0760 -0.7891 1.2086 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0125 30 1 -0.3633 0.5246 0.8836 31 1 2.6187 1.6736 -0.7224 32 1 1.5358 3.7033 3.0557 33 1 0.8800 4.9857 1.9950 34 1 2.0406 6.7828 3.9252 35 1 4.2082 7.9532 4.2570 36 1 6.2240 7.0861 3.1365 37 1 4.2938 3.7052 0.2346 38 1 4.1127 2.7381 1.7283 39 1 1.4469 -1.6530 -1.4383 40 1 2.1820 -0.1491 -2.0882 41 1 3.7993 -2.1364 -1.2218 42 1 4.1930 -0.4409 -0.8029 43 1 2.5868 -1.9591 4.3560 44 1 2.3711 -0.0991 1.9991 45 1 1.3141 -1.4753 1.5781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046800767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:20 Heat of formation + Delta-G solvation = 27.763209 kcal Electronic energy + Delta-G solvation = -26838.191978 eV Core-core repulsion = 23242.080391 eV Total energy + Delta-G solvation = -3596.111587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94206 -39.65466 -37.50164 -35.72338 -33.85847 -32.73166 -31.92836 -30.45376 -29.19924 -28.18246 -27.81955 -25.76683 -24.49076 -23.54372 -21.91442 -21.82988 -20.41908 -19.85260 -18.86236 -17.27384 -16.71347 -16.66606 -16.36803 -15.73175 -15.11434 -14.77298 -14.48784 -14.17326 -13.86075 -13.68906 -13.38605 -13.28454 -12.91541 -12.89307 -12.55627 -12.42018 -12.27083 -11.90152 -11.75310 -11.58279 -11.49892 -11.36701 -11.21915 -10.91896 -10.76935 -10.46777 -10.31076 -10.04379 -9.95280 -9.81407 -9.60978 -9.36768 -9.17225 -8.75597 -8.52794 -8.43044 -6.75745 -5.63844 -2.97821 1.01528 1.20209 3.00263 3.44323 3.48897 3.50521 3.51650 3.69445 3.89068 4.40972 4.55410 4.59621 4.80696 4.83075 4.91649 5.07858 5.12556 5.17563 5.35463 5.42514 5.49591 5.52827 5.65893 5.66684 5.71301 5.73308 5.74884 5.95288 6.03191 6.06441 6.13765 6.14998 6.17789 6.23427 6.28527 6.59316 6.61770 6.62641 6.71772 6.79938 7.04183 7.59631 7.77244 7.90849 7.92971 8.04417 8.32508 8.69765 9.27451 9.88746 10.54859 11.46778 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.004217 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.561916 B = 6637.871311 C = 7856.916443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 N -0.708 5.708 4 C 0.523 3.477 5 O -0.520 6.520 6 C -0.108 4.108 7 H 0.105 0.895 8 C -0.065 4.065 9 C -0.142 4.142 10 C -0.066 4.066 11 C -0.177 4.177 12 C 0.098 3.902 13 N -0.479 5.479 14 C 0.125 3.875 15 C -0.061 4.061 16 C -0.134 4.134 17 C 0.133 3.867 18 N -0.607 5.607 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.005 4.005 22 N -0.912 5.912 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.183 3.817 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.061 0.939 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 17.057 -6.840 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 N -0.359 5.359 4 C 0.308 3.692 5 O -0.395 6.395 6 C -0.130 4.130 7 H 0.123 0.877 8 C -0.102 4.102 9 C -0.144 4.144 10 C -0.091 4.091 11 C -0.197 4.197 12 C -0.059 4.059 13 N -0.188 5.188 14 C -0.013 4.013 15 C -0.099 4.099 16 C -0.172 4.172 17 C 0.007 3.993 18 N -0.334 5.334 19 C -0.362 4.362 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.559 5.559 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.058 3.942 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.226 0.774 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.769 16.377 -6.353 17.655 hybrid contribution 0.283 0.060 0.762 0.815 sum -1.485 16.437 -5.591 17.425 Atomic orbital electron populations 1.21992 0.94361 1.02186 1.01983 1.21782 0.93332 0.80658 0.98758 1.45959 1.51885 1.12605 1.25455 1.19964 0.81009 0.86214 0.82055 1.90719 1.36947 1.76823 1.35024 1.22027 0.95662 0.94707 1.00586 0.87665 1.20869 0.95105 0.96324 0.97939 1.21517 0.97979 0.96465 0.98478 1.21052 0.98460 0.93622 0.96009 1.22041 0.93700 1.01823 1.02134 1.22612 0.98451 0.92120 0.92714 1.66845 1.28470 1.07501 1.15947 1.21783 0.88359 0.95385 0.95771 1.20965 0.93811 0.94977 1.00167 1.23051 0.98968 0.99480 0.95735 1.21541 0.93385 0.97229 0.87145 1.44613 1.32167 1.51796 1.04853 1.19017 1.11425 1.16567 0.89161 0.90546 1.24830 0.98235 1.00433 0.96674 1.69986 1.27760 1.47089 1.11056 0.86188 0.80283 0.79326 0.80517 1.21707 1.21790 1.20665 1.21579 0.88844 0.93118 0.90642 0.93784 0.91948 0.90591 0.77401 0.87481 0.90055 0.84984 0.84691 0.82706 0.89061 0.88039 0.90250 0.91777 0.94313 0.96631 0.93727 0.92074 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.41 37.16 0.31 -2.17 16 2 C 0.14 2.56 0.81 -129.99 -0.10 2.46 16 3 N -0.71 -11.00 5.15 -45.92 -0.24 -11.23 16 4 C 0.52 8.53 6.27 -10.99 -0.07 8.47 16 5 O -0.52 -10.65 12.45 5.56 0.07 -10.58 16 6 C -0.11 -1.34 3.48 -90.22 -0.31 -1.66 16 7 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 8 C -0.06 -0.82 6.09 -26.91 -0.16 -0.98 16 9 C -0.14 -1.82 6.16 -104.20 -0.64 -2.46 16 10 C -0.07 -0.71 10.17 -39.27 -0.40 -1.11 16 11 C -0.18 -1.74 10.12 -39.46 -0.40 -2.14 16 12 C 0.10 1.11 11.18 -17.62 -0.20 0.92 16 13 N -0.48 -6.89 10.35 -9.18 -0.10 -6.98 16 14 C 0.12 1.76 7.32 -82.03 -0.60 1.16 16 15 C -0.06 -0.81 6.32 -26.66 -0.17 -0.98 16 16 C -0.13 -2.17 6.08 -24.58 -0.15 -2.32 16 17 C 0.13 2.66 7.21 -2.53 -0.02 2.64 16 18 N -0.61 -15.54 3.41 -169.70 -0.58 -16.12 16 19 C -0.23 -6.61 10.26 -15.06 -0.15 -6.77 16 20 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 21 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 22 N -0.91 -27.79 10.36 55.49 0.58 -27.22 16 23 Si 0.91 22.70 29.56 -169.99 -5.02 17.68 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.18 4.52 4.32 -2.81 -0.01 4.51 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.08 1.43 6.20 -51.93 -0.32 1.11 16 31 H 0.39 4.88 8.48 -40.82 -0.35 4.53 16 32 H 0.11 1.63 6.99 -51.92 -0.36 1.26 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.64 7.90 -51.93 -0.41 1.23 16 39 H 0.08 1.28 8.05 -51.92 -0.42 0.86 16 40 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 1.74 5.91 -51.93 -0.31 1.43 16 45 H 0.05 1.37 7.22 -51.93 -0.37 0.99 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -34.81 358.36 -9.80 -44.61 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.73 Total: 5.10 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.18 Total: -0.66 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.33 Total: -61.55 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.81 -9.80 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046800767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.372 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds