Wall clock time and date at job start Tue Mar 31 2020 11:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 110.64308 * 2 1 4 4 C 1.34783 * 119.99754 * 61.68637 * 3 2 1 5 5 O 1.21279 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99629 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.73105 * 298.04410 * 6 4 3 8 8 C 1.54376 * 110.82041 * 174.42498 * 6 4 3 9 9 C 1.51217 * 105.12132 * 215.48715 * 8 6 4 10 10 C 1.38738 * 130.69578 * 197.15237 * 9 8 6 11 11 C 1.38580 * 118.55659 * 179.97438 * 10 9 8 12 12 C 1.38230 * 118.99434 * 359.97438 * 11 10 9 13 13 N 1.31687 * 120.79738 * 359.97438 * 12 11 10 14 14 C 1.32307 * 122.03105 * 0.03459 * 13 12 11 15 15 C 1.51474 * 130.13905 * 179.97438 * 14 13 12 16 16 C 1.55160 * 110.87260 * 236.75249 * 2 1 3 17 17 C 1.55124 * 101.48722 * 205.90353 * 16 2 1 18 18 N 1.47425 * 104.72444 * 37.29072 * 17 16 2 19 19 C 1.36936 * 125.64977 * 155.81615 * 18 17 16 20 20 H 1.08002 * 119.99440 * 5.51722 * 19 18 17 21 21 C 1.38806 * 120.00445 * 185.51373 * 19 18 17 22 22 N 1.31622 * 119.99778 * 7.32574 * 21 19 18 23 23 Si 1.86802 * 120.00449 * 187.32749 * 21 19 18 24 24 H 1.48498 * 109.46926 * 265.01265 * 23 21 19 25 25 H 1.48496 * 109.46768 * 25.01215 * 23 21 19 26 26 H 1.48496 * 109.47166 * 145.01278 * 23 21 19 27 27 C 1.47019 * 108.70418 * 335.56047 * 18 17 16 28 28 H 1.08994 * 109.47398 * 298.31428 * 1 2 3 29 29 H 1.09007 * 109.46713 * 58.30875 * 1 2 3 30 30 H 1.08998 * 109.47233 * 178.30767 * 1 2 3 31 31 H 0.96998 * 120.00211 * 241.68984 * 3 2 1 32 32 H 1.08999 * 110.31141 * 334.39966 * 8 6 4 33 33 H 1.09005 * 110.31365 * 96.57451 * 8 6 4 34 34 H 1.08001 * 120.72594 * 0.02562 * 10 9 8 35 35 H 1.08006 * 120.50500 * 179.97438 * 11 10 9 36 36 H 1.07993 * 119.60318 * 180.02562 * 12 11 10 37 37 H 1.09001 * 110.29590 * 43.87665 * 15 14 13 38 38 H 1.08994 * 110.29645 * 281.74939 * 15 14 13 39 39 H 1.09004 * 111.00376 * 324.14135 * 16 2 1 40 40 H 1.09001 * 111.00439 * 87.94964 * 16 2 1 41 41 H 1.09007 * 110.49094 * 278.45471 * 17 16 2 42 42 H 1.08993 * 110.34397 * 156.05723 * 17 16 2 43 43 H 0.97000 * 119.99978 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.88756 * 120.70173 * 27 18 17 45 45 H 1.09004 * 109.88245 * 241.86548 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 1.0276 5 8 1.0864 1.8046 1.9525 6 6 2.2978 3.6067 1.0279 7 1 3.3877 3.6080 1.0330 8 6 1.7383 4.4039 2.2256 9 6 1.5497 5.8124 1.7085 10 6 1.3825 7.0106 2.3876 11 6 1.2292 8.1740 1.6505 12 6 1.2489 8.1002 0.2703 13 7 1.4109 6.9451 -0.3409 14 6 1.5602 5.8127 0.3268 15 6 1.7562 4.3988 -0.1800 16 6 2.0829 -0.7948 -1.2125 17 6 3.4706 -1.2414 -0.6823 18 7 3.2470 -1.5462 0.7426 19 6 4.0076 -2.3902 1.5071 20 1 4.9052 -2.8288 1.0970 21 6 3.6249 -2.6818 2.8091 22 7 2.4610 -2.2659 3.2618 23 14 4.7616 -3.6646 3.9190 24 1 4.3875 -5.1006 3.8636 25 1 6.1644 -3.5004 3.4606 26 1 4.6363 -3.1739 5.3149 27 6 2.0760 -0.7893 1.2086 28 1 -0.3634 0.4874 0.9046 29 1 -0.3633 0.5399 -0.8745 30 1 -0.3633 -1.0272 -0.0303 31 1 2.5903 1.6844 -0.7395 32 1 0.7830 3.9870 2.5446 33 1 2.4501 4.3960 3.0511 34 1 1.3727 7.0362 3.4673 35 1 1.0964 9.1240 2.1468 36 1 1.1307 9.0008 -0.3138 37 1 2.4788 4.3864 -0.9959 38 1 0.8054 3.9801 -0.5096 39 1 1.4514 -1.6546 -1.4367 40 1 2.1881 -0.1516 -2.0862 41 1 4.1970 -0.4355 -0.7884 42 1 3.8101 -2.1315 -1.2119 43 1 2.1938 -2.4694 4.1718 44 1 1.3140 -1.4754 1.5781 45 1 2.3711 -0.0993 1.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046800768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:24 Heat of formation + Delta-G solvation = 27.010045 kcal Electronic energy + Delta-G solvation = -26574.861215 eV Core-core repulsion = 22978.716968 eV Total energy + Delta-G solvation = -3596.144247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04367 -39.69152 -37.53320 -35.80381 -33.89376 -32.83609 -31.92933 -30.48210 -29.26528 -28.18382 -27.91899 -25.76274 -24.54122 -23.56885 -22.01808 -21.90747 -20.42032 -19.91129 -18.86493 -17.31542 -16.77994 -16.68360 -16.44945 -15.72967 -15.21683 -14.91586 -14.44735 -14.29131 -13.82348 -13.72679 -13.42439 -13.31321 -13.04106 -13.01088 -12.64074 -12.46237 -12.32194 -11.92508 -11.76131 -11.59906 -11.42935 -11.41110 -11.32565 -10.94620 -10.76654 -10.44314 -10.33854 -10.03852 -9.95862 -9.91204 -9.64075 -9.49367 -9.19363 -8.86953 -8.55783 -8.44453 -6.75491 -5.62156 -2.99653 0.90049 1.09407 2.99881 3.43023 3.47448 3.48856 3.50748 3.57268 3.76466 4.32019 4.51602 4.54617 4.71071 4.74913 4.86715 4.97992 5.07276 5.13818 5.34173 5.42071 5.43119 5.49942 5.57428 5.61515 5.62224 5.68301 5.73705 5.85628 5.92760 6.04615 6.07119 6.10859 6.14969 6.23491 6.29831 6.50626 6.59010 6.62407 6.71552 6.79412 7.03260 7.62513 7.76122 7.79858 7.86882 8.03626 8.34018 8.68401 9.27072 9.88533 10.54235 11.45966 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.003271 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.146896 B = 8558.372549 C = 9314.063219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.142 3.858 3 N -0.709 5.709 4 C 0.523 3.477 5 O -0.520 6.520 6 C -0.109 4.109 7 H 0.109 0.891 8 C -0.064 4.064 9 C -0.140 4.140 10 C -0.066 4.066 11 C -0.175 4.175 12 C 0.097 3.903 13 N -0.480 5.480 14 C 0.119 3.881 15 C -0.059 4.059 16 C -0.133 4.133 17 C 0.133 3.867 18 N -0.606 5.606 19 C -0.232 4.232 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.912 5.912 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.291 1.291 27 C 0.177 3.823 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.392 0.608 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.040 0.960 43 H 0.252 0.748 44 H 0.069 0.931 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 18.393 -7.560 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.056 3.944 3 N -0.360 5.360 4 C 0.308 3.692 5 O -0.395 6.395 6 C -0.131 4.131 7 H 0.127 0.873 8 C -0.102 4.102 9 C -0.142 4.142 10 C -0.091 4.091 11 C -0.195 4.195 12 C -0.060 4.060 13 N -0.188 5.188 14 C -0.018 4.018 15 C -0.097 4.097 16 C -0.172 4.172 17 C 0.006 3.994 18 N -0.332 5.332 19 C -0.361 4.361 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.559 5.559 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.208 1.208 26 H -0.217 1.217 27 C 0.052 3.948 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.480 17.975 -7.571 19.813 hybrid contribution 0.938 -0.142 1.224 1.549 sum -2.543 17.833 -6.347 19.098 Atomic orbital electron populations 1.21968 0.94341 1.02092 1.01937 1.21783 0.93318 0.80472 0.98813 1.45996 1.54050 1.13000 1.22957 1.19956 0.80670 0.86193 0.82429 1.90734 1.38060 1.76177 1.34529 1.22003 1.02315 0.92784 0.96034 0.87253 1.20864 1.03718 0.88489 0.97136 1.21556 1.00379 0.96208 0.96029 1.21098 0.96264 0.91097 1.00673 1.22064 1.02653 0.99092 0.95660 1.22602 0.96135 0.95133 0.92174 1.66841 1.12077 0.97945 1.41969 1.21777 0.95267 0.93858 0.90936 1.20900 1.03036 0.88195 0.97574 1.23088 0.98953 0.99496 0.95665 1.21605 0.93412 0.97235 0.87126 1.44510 1.32773 1.51238 1.04728 1.18999 1.03178 1.19956 0.93927 0.90621 1.24824 0.97097 1.00743 0.97733 1.69958 1.19481 1.50017 1.16448 0.86157 0.79967 0.79547 0.80417 1.21684 1.20753 1.21682 1.21569 0.89914 0.92911 0.90409 0.90887 0.93754 0.91826 0.77439 0.87753 0.89692 0.84868 0.84636 0.82684 0.88975 0.88735 0.90164 0.91829 0.96666 0.94217 0.93750 0.91265 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.41 37.16 0.31 -2.16 16 2 C 0.14 2.59 0.81 -129.98 -0.10 2.49 16 3 N -0.71 -10.93 5.09 -45.91 -0.23 -11.16 16 4 C 0.52 8.48 6.29 -10.99 -0.07 8.41 16 5 O -0.52 -10.65 12.51 5.56 0.07 -10.58 16 6 C -0.11 -1.34 3.46 -90.40 -0.31 -1.66 16 7 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.06 -0.79 6.06 -26.91 -0.16 -0.96 16 9 C -0.14 -1.62 6.16 -104.21 -0.64 -2.26 16 10 C -0.07 -0.64 10.17 -39.27 -0.40 -1.04 16 11 C -0.17 -1.49 10.12 -39.46 -0.40 -1.89 16 12 C 0.10 0.94 11.18 -17.62 -0.20 0.74 16 13 N -0.48 -5.88 10.35 -9.19 -0.10 -5.98 16 14 C 0.12 1.44 7.32 -82.03 -0.60 0.84 16 15 C -0.06 -0.63 6.26 -26.84 -0.17 -0.80 16 16 C -0.13 -2.18 6.11 -24.46 -0.15 -2.33 16 17 C 0.13 2.65 7.22 -2.41 -0.02 2.63 16 18 N -0.61 -15.50 3.39 -169.94 -0.58 -16.07 16 19 C -0.23 -6.56 10.26 -15.06 -0.15 -6.71 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 22 N -0.91 -27.61 10.46 55.49 0.58 -27.03 16 23 Si 0.91 22.51 29.56 -169.99 -5.02 17.48 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.18 4.37 4.34 -3.06 -0.01 4.36 16 28 H 0.07 1.39 6.44 -51.93 -0.33 1.05 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 31 H 0.39 4.81 8.46 -40.82 -0.35 4.46 16 32 H 0.10 1.45 7.07 -51.93 -0.37 1.09 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.03 7.88 -51.93 -0.41 0.62 16 39 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 40 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 41 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.07 1.96 6.56 -51.93 -0.34 1.62 16 45 H 0.04 1.25 6.31 -51.93 -0.33 0.93 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -34.54 358.41 -9.79 -44.33 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.73 Total: 4.25 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.17 Total: -0.64 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.33 Total: -60.24 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.54 -9.79 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046800768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.341 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds