Wall clock time and date at job start Tue Mar 31 2020 11:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 110.64308 * 2 1 4 4 C 1.34783 * 119.99754 * 61.68637 * 3 2 1 5 5 O 1.21279 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99629 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.73105 * 298.04410 * 6 4 3 8 8 C 1.54376 * 110.82041 * 174.42498 * 6 4 3 9 9 C 1.51217 * 105.12132 * 215.48715 * 8 6 4 10 10 C 1.38738 * 130.69578 * 197.15237 * 9 8 6 11 11 C 1.38580 * 118.55659 * 179.97438 * 10 9 8 12 12 C 1.38230 * 118.99434 * 359.97438 * 11 10 9 13 13 N 1.31687 * 120.79738 * 359.97438 * 12 11 10 14 14 C 1.32307 * 122.03105 * 0.03459 * 13 12 11 15 15 C 1.51474 * 130.13905 * 179.97438 * 14 13 12 16 16 C 1.55160 * 110.87260 * 236.75249 * 2 1 3 17 17 C 1.55124 * 101.48722 * 205.90353 * 16 2 1 18 18 N 1.47425 * 104.72444 * 37.29072 * 17 16 2 19 19 C 1.36936 * 125.64977 * 155.81615 * 18 17 16 20 20 H 1.08002 * 119.99440 * 5.51722 * 19 18 17 21 21 C 1.38806 * 120.00445 * 185.51373 * 19 18 17 22 22 N 1.31622 * 119.99778 * 7.32574 * 21 19 18 23 23 Si 1.86802 * 120.00449 * 187.32749 * 21 19 18 24 24 H 1.48498 * 109.46926 * 265.01265 * 23 21 19 25 25 H 1.48496 * 109.46768 * 25.01215 * 23 21 19 26 26 H 1.48496 * 109.47166 * 145.01278 * 23 21 19 27 27 C 1.47019 * 108.70418 * 335.56047 * 18 17 16 28 28 H 1.08994 * 109.47398 * 298.31428 * 1 2 3 29 29 H 1.09007 * 109.46713 * 58.30875 * 1 2 3 30 30 H 1.08998 * 109.47233 * 178.30767 * 1 2 3 31 31 H 0.96998 * 120.00211 * 241.68984 * 3 2 1 32 32 H 1.08999 * 110.31141 * 334.39966 * 8 6 4 33 33 H 1.09005 * 110.31365 * 96.57451 * 8 6 4 34 34 H 1.08001 * 120.72594 * 0.02562 * 10 9 8 35 35 H 1.08006 * 120.50500 * 179.97438 * 11 10 9 36 36 H 1.07993 * 119.60318 * 180.02562 * 12 11 10 37 37 H 1.09001 * 110.29590 * 43.87665 * 15 14 13 38 38 H 1.08994 * 110.29645 * 281.74939 * 15 14 13 39 39 H 1.09004 * 111.00376 * 324.14135 * 16 2 1 40 40 H 1.09001 * 111.00439 * 87.94964 * 16 2 1 41 41 H 1.09007 * 110.49094 * 278.45471 * 17 16 2 42 42 H 1.08993 * 110.34397 * 156.05723 * 17 16 2 43 43 H 0.97000 * 119.99978 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.88756 * 120.70173 * 27 18 17 45 45 H 1.09004 * 109.88245 * 241.86548 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 1.0276 5 8 1.0864 1.8046 1.9525 6 6 2.2978 3.6067 1.0279 7 1 3.3877 3.6080 1.0330 8 6 1.7383 4.4039 2.2256 9 6 1.5497 5.8124 1.7085 10 6 1.3825 7.0106 2.3876 11 6 1.2292 8.1740 1.6505 12 6 1.2489 8.1002 0.2703 13 7 1.4109 6.9451 -0.3409 14 6 1.5602 5.8127 0.3268 15 6 1.7562 4.3988 -0.1800 16 6 2.0829 -0.7948 -1.2125 17 6 3.4706 -1.2414 -0.6823 18 7 3.2470 -1.5462 0.7426 19 6 4.0076 -2.3902 1.5071 20 1 4.9052 -2.8288 1.0970 21 6 3.6249 -2.6818 2.8091 22 7 2.4610 -2.2659 3.2618 23 14 4.7616 -3.6646 3.9190 24 1 4.3875 -5.1006 3.8636 25 1 6.1644 -3.5004 3.4606 26 1 4.6363 -3.1739 5.3149 27 6 2.0760 -0.7893 1.2086 28 1 -0.3634 0.4874 0.9046 29 1 -0.3633 0.5399 -0.8745 30 1 -0.3633 -1.0272 -0.0303 31 1 2.5903 1.6844 -0.7395 32 1 0.7830 3.9870 2.5446 33 1 2.4501 4.3960 3.0511 34 1 1.3727 7.0362 3.4673 35 1 1.0964 9.1240 2.1468 36 1 1.1307 9.0008 -0.3138 37 1 2.4788 4.3864 -0.9959 38 1 0.8054 3.9801 -0.5096 39 1 1.4514 -1.6546 -1.4367 40 1 2.1881 -0.1516 -2.0862 41 1 4.1970 -0.4355 -0.7884 42 1 3.8101 -2.1315 -1.2119 43 1 2.1938 -2.4694 4.1718 44 1 1.3140 -1.4754 1.5781 45 1 2.3711 -0.0993 1.9992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046800768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:23 Heat of formation + Delta-G solvation = 3.605130 kcal Electronic energy + Delta-G solvation = -26575.876128 eV Core-core repulsion = 22978.716968 eV Total energy + Delta-G solvation = -3597.159160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97757 -40.95890 -39.00559 -36.85586 -35.62817 -33.80758 -33.52175 -31.98292 -30.31249 -29.86066 -28.79484 -27.66991 -25.75145 -25.09855 -22.93941 -22.78739 -22.13878 -21.12933 -20.37153 -18.91083 -18.24864 -17.63801 -17.30100 -17.23964 -16.46535 -16.12692 -15.84450 -15.66676 -15.47926 -15.07065 -14.59471 -14.40682 -14.14648 -14.06766 -13.93100 -13.82279 -13.55707 -13.38149 -13.26167 -13.04164 -12.84280 -12.71052 -12.61805 -12.38415 -12.31475 -12.12244 -11.95254 -11.84907 -11.75850 -11.47443 -10.78165 -10.69073 -10.51328 -10.28256 -9.91138 -9.66922 -8.84920 -7.79540 -5.19220 0.13694 0.32848 1.42941 1.45332 1.54496 1.72973 2.23702 2.49932 2.79827 2.94368 3.34888 3.40429 3.63448 3.66550 3.78520 3.86309 3.93798 4.06831 4.08582 4.20770 4.23395 4.30434 4.41845 4.61572 4.63961 4.68120 4.70293 4.79025 4.80420 4.83922 4.88379 4.99419 5.04423 5.05171 5.13433 5.22874 5.23563 5.30503 5.35362 5.46269 5.53718 5.78084 5.84263 5.90525 6.24159 6.72693 7.02373 7.10783 7.43802 7.81934 8.45446 9.26412 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.003271 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.146896 B = 8558.372549 C = 9314.063219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.151 3.849 3 N -0.697 5.697 4 C 0.519 3.481 5 O -0.569 6.569 6 C -0.099 4.099 7 H 0.125 0.875 8 C -0.062 4.062 9 C -0.157 4.157 10 C -0.073 4.073 11 C -0.166 4.166 12 C 0.090 3.910 13 N -0.503 5.503 14 C 0.101 3.899 15 C -0.049 4.049 16 C -0.115 4.115 17 C 0.124 3.876 18 N -0.629 5.629 19 C -0.240 4.240 20 H 0.084 0.916 21 C -0.071 4.071 22 N -0.946 5.946 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.266 1.266 26 H -0.299 1.299 27 C 0.192 3.808 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.413 0.587 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.242 0.758 44 H 0.020 0.980 45 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 20.471 -10.043 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 N -0.350 5.350 4 C 0.305 3.695 5 O -0.448 6.448 6 C -0.120 4.120 7 H 0.143 0.857 8 C -0.100 4.100 9 C -0.159 4.159 10 C -0.099 4.099 11 C -0.186 4.186 12 C -0.067 4.067 13 N -0.213 5.213 14 C -0.035 4.035 15 C -0.087 4.087 16 C -0.153 4.153 17 C -0.001 4.001 18 N -0.356 5.356 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.264 4.264 22 N -0.595 5.595 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.191 1.191 26 H -0.226 1.226 27 C 0.066 3.934 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.188 0.812 36 H 0.202 0.798 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -2.398 20.068 -10.134 22.609 hybrid contribution 0.623 -0.709 2.001 2.212 sum -1.775 19.359 -8.133 21.073 Atomic orbital electron populations 1.21883 0.93430 1.02027 1.02244 1.21457 0.93930 0.81397 0.96795 1.45800 1.53997 1.11612 1.23548 1.20652 0.79675 0.87572 0.81559 1.90727 1.40275 1.77403 1.36394 1.21913 1.02864 0.90120 0.97139 0.85725 1.20750 1.02481 0.89488 0.97327 1.21543 1.01993 0.96126 0.96237 1.21453 0.95608 0.90977 1.01846 1.22445 1.00798 0.99968 0.95355 1.23215 0.94948 0.95334 0.93181 1.66868 1.13097 0.98595 1.42699 1.21892 0.96126 0.94373 0.91156 1.20827 1.03403 0.87413 0.97070 1.23047 0.96161 1.00024 0.96098 1.21891 0.96013 0.98090 0.84118 1.44844 1.32625 1.50822 1.07266 1.19447 1.03496 1.19553 0.94468 0.89833 1.25703 0.98621 1.02613 0.99470 1.70245 1.21419 1.51873 1.15998 0.85109 0.78750 0.77994 0.77795 1.21186 1.19062 1.22595 1.21161 0.88559 0.91500 0.92172 0.93687 0.89991 0.92345 0.75025 0.90181 0.89811 0.83194 0.81203 0.79765 0.86725 0.88991 0.89925 0.86575 0.94930 0.93559 0.94863 0.96202 0.98679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.41 71.98 0.61 -4.06 16 2 C 0.15 5.44 0.81 4.80 0.00 5.45 16 3 N -0.70 -20.67 5.09 -417.55 -2.12 -22.79 16 4 C 0.52 17.12 6.29 87.65 0.55 17.67 16 5 O -0.57 -24.90 12.51 -3.03 -0.04 -24.94 16 6 C -0.10 -2.39 3.46 -10.65 -0.04 -2.42 16 7 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 8 C -0.06 -1.59 6.06 30.48 0.18 -1.41 16 9 C -0.16 -3.55 6.16 -19.60 -0.12 -3.67 16 10 C -0.07 -1.31 10.17 22.47 0.23 -1.09 16 11 C -0.17 -2.36 10.12 22.35 0.23 -2.13 16 12 C 0.09 1.50 11.18 84.71 0.95 2.44 16 13 N -0.50 -11.37 10.35 -182.98 -1.89 -13.26 16 14 C 0.10 2.33 7.32 42.72 0.31 2.64 16 15 C -0.05 -0.98 6.26 30.52 0.19 -0.79 16 16 C -0.11 -3.42 6.11 32.06 0.20 -3.22 16 17 C 0.12 4.69 7.22 86.93 0.63 5.32 16 18 N -0.63 -32.63 3.39 -691.56 -2.35 -34.97 16 19 C -0.24 -13.79 10.26 84.03 0.86 -12.93 16 20 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 21 C -0.07 -4.22 5.45 84.86 0.46 -3.76 16 22 N -0.95 -60.57 10.46 21.65 0.23 -60.35 16 23 Si 0.98 47.55 29.56 68.60 2.03 49.58 16 24 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 27 C 0.19 9.91 4.34 86.73 0.38 10.28 16 28 H 0.04 1.78 6.44 -2.39 -0.02 1.77 16 29 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.41 8.81 8.46 -92.71 -0.78 8.02 16 32 H 0.08 2.42 7.07 -2.39 -0.02 2.40 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.09 1.88 7.88 -2.39 -0.02 1.87 16 39 H 0.08 2.47 8.05 -2.38 -0.02 2.45 16 40 H 0.12 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.02 1.21 6.56 -2.39 -0.02 1.19 16 45 H 0.00 -0.30 6.31 -2.39 -0.02 -0.32 16 Total: -1.00 -81.59 358.41 1.69 -79.91 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.22 Total: 18.51 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.62 Total: 8.32 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -6.14 Total: -131.37 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -81.59 1.69 -79.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046800768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.512 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds