Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 110.63957 * 2 1 4 4 C 1.34780 * 120.00309 * 300.69988 * 3 2 1 5 5 O 1.21518 * 119.99528 * 359.97438 * 4 3 2 6 6 C 1.48162 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.39313 * 119.72513 * 180.02562 * 6 4 3 8 8 C 1.38592 * 119.05755 * 179.76906 * 7 6 4 9 9 C 1.38622 * 118.48944 * 0.47461 * 8 7 6 10 10 C 1.50706 * 120.32356 * 179.75724 * 9 8 7 11 11 C 1.53002 * 117.49668 * 239.72480 * 10 9 8 12 12 C 1.53000 * 60.02940 * 252.51929 * 11 10 9 13 13 C 1.38561 * 119.35192 * 359.48261 * 9 8 7 14 14 N 1.31521 * 120.90331 * 0.29819 * 13 9 8 15 15 C 1.55157 * 110.72058 * 123.14403 * 2 1 3 16 16 C 1.55382 * 101.36646 * 153.94770 * 15 2 1 17 17 N 1.47426 * 104.87292 * 323.01432 * 16 15 2 18 18 C 1.36941 * 125.64978 * 204.10028 * 17 16 15 19 19 H 1.08001 * 120.00435 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99603 * 0.04021 * 18 17 16 21 21 N 1.31615 * 120.00360 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47038 * 59.99683 * 22 20 18 24 24 H 1.48495 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46884 * 300.00123 * 22 20 18 26 26 C 1.47016 * 108.70539 * 24.13507 * 17 16 15 27 27 H 1.09003 * 109.47640 * 59.30044 * 1 2 3 28 28 H 1.09002 * 109.47376 * 179.29796 * 1 2 3 29 29 H 1.09001 * 109.47173 * 299.29961 * 1 2 3 30 30 H 0.96997 * 120.00439 * 120.70444 * 3 2 1 31 31 H 1.08000 * 120.46987 * 0.02562 * 7 6 4 32 32 H 1.08002 * 120.75141 * 180.25192 * 8 7 6 33 33 H 1.09000 * 115.55924 * 25.40885 * 10 9 8 34 34 H 1.09002 * 117.49918 * 145.01964 * 11 10 9 35 35 H 1.09002 * 117.49754 * 0.02562 * 11 10 9 36 36 H 1.09008 * 117.49673 * 107.47884 * 12 11 10 37 37 H 1.08999 * 117.49942 * 252.47315 * 12 11 10 38 38 H 1.07999 * 119.54881 * 180.27504 * 13 9 8 39 39 H 1.09004 * 111.00115 * 272.11336 * 15 2 1 40 40 H 1.08995 * 111.00550 * 35.96616 * 15 2 1 41 41 H 1.09004 * 110.34496 * 204.16648 * 16 15 2 42 42 H 1.09002 * 110.44422 * 81.91552 * 16 15 2 43 43 H 0.97006 * 120.00198 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.88497 * 239.52626 * 26 17 16 45 45 H 1.08996 * 110.01713 * 118.42884 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7263 2.2117 -1.0036 5 8 1.0097 1.8323 -1.9087 6 6 2.2490 3.5980 -1.0039 7 6 1.9140 4.4623 -2.0439 8 6 2.4067 5.7576 -2.0278 9 6 3.2257 6.1405 -0.9769 10 6 3.7888 7.5373 -0.9210 11 6 5.3116 7.6853 -0.9121 12 6 4.5098 7.9578 0.3622 13 6 3.5170 5.2282 0.0245 14 7 3.0321 4.0062 -0.0132 15 6 2.0790 -0.7934 1.2151 16 6 3.4673 -1.2455 0.6837 17 7 3.2470 -1.5461 -0.7427 18 6 4.0076 -2.3901 -1.5072 19 1 3.7632 -2.5439 -2.5479 20 6 5.0926 -3.0482 -0.9444 21 7 5.3906 -2.8606 0.3237 22 14 6.1306 -4.1989 -1.9875 23 1 6.7186 -3.4432 -3.1225 24 1 7.2197 -4.7728 -1.1570 25 1 5.2781 -5.2960 -2.5120 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.6187 1.6737 0.7222 31 1 1.2761 4.1290 -2.8490 32 1 2.1611 6.4517 -2.8179 33 1 3.2122 8.2982 -1.4471 34 1 5.7369 8.5436 -1.4323 35 1 5.9062 6.7724 -0.9472 36 1 4.5766 7.2239 1.1654 37 1 4.4079 8.9952 0.6805 38 1 4.1510 5.5245 0.8470 39 1 2.1821 -0.1490 2.0882 40 1 1.4469 -1.6529 1.4383 41 1 3.8031 -2.1379 1.2120 42 1 4.1969 -0.4432 0.7940 43 1 6.1490 -3.3202 0.7169 44 1 1.3139 -1.4754 -1.5781 45 1 2.3685 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046809600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = 57.285936 kcal Electronic energy + Delta-G solvation = -26118.783571 eV Core-core repulsion = 22523.952185 eV Total energy + Delta-G solvation = -3594.831386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84201 -39.52985 -37.61056 -36.93206 -34.01502 -32.80417 -31.83808 -31.02903 -29.77817 -28.58363 -25.68247 -25.33396 -24.10619 -23.56529 -22.67154 -21.67124 -20.68230 -20.26505 -18.94433 -18.05445 -17.17236 -16.77476 -15.93929 -15.42582 -15.24036 -14.97250 -14.92312 -14.60934 -14.20231 -13.78763 -13.54257 -13.51880 -13.07277 -12.85420 -12.70177 -12.19519 -12.09146 -11.96587 -11.85359 -11.68429 -11.50405 -11.35798 -10.89880 -10.81796 -10.80817 -10.39393 -10.28827 -10.07949 -10.03811 -9.94853 -9.78634 -9.59589 -9.25814 -9.02125 -8.60093 -8.54006 -6.75553 -5.59582 -2.99962 0.52363 1.07037 2.80448 3.35657 3.44882 3.47200 3.48427 3.50160 3.89953 4.00790 4.24537 4.42390 4.53920 4.54621 4.63576 4.67322 4.81128 5.05643 5.15456 5.24080 5.25106 5.44169 5.46941 5.54925 5.57154 5.62396 5.64080 5.71731 5.79664 5.86473 5.97149 6.09708 6.22333 6.29042 6.40626 6.41331 6.51495 6.56953 6.75840 6.87229 7.17824 7.53427 7.58678 7.68318 7.87358 7.97403 8.40772 8.52210 9.28574 9.89327 10.54698 11.44579 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003296 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.045934 B = 8494.264424 C = 9412.350985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 N -0.685 5.685 4 C 0.570 3.430 5 O -0.533 6.533 6 C 0.081 3.919 7 C -0.108 4.108 8 C -0.079 4.079 9 C -0.088 4.088 10 C -0.119 4.119 11 C -0.167 4.167 12 C -0.174 4.174 13 C 0.096 3.904 14 N -0.451 5.451 15 C -0.147 4.147 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.218 4.218 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.924 5.924 22 Si 0.914 3.086 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.138 3.862 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.012 0.988 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.576 21.780 1.528 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 N -0.335 5.335 4 C 0.354 3.646 5 O -0.410 6.410 6 C -0.057 4.057 7 C -0.129 4.129 8 C -0.104 4.104 9 C -0.091 4.091 10 C -0.138 4.138 11 C -0.203 4.203 12 C -0.211 4.211 13 C -0.064 4.064 14 N -0.161 5.161 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.346 4.346 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.011 3.989 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.177 0.823 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.718 20.689 1.569 21.522 hybrid contribution 0.770 0.329 -0.916 1.241 sum -4.948 21.018 0.653 21.602 Atomic orbital electron populations 1.22055 0.94163 1.02343 1.02347 1.21426 0.93094 0.80208 0.98197 1.45844 1.50535 1.11869 1.25204 1.17776 0.80674 0.83647 0.82486 1.90739 1.37782 1.76483 1.35974 1.21353 0.96572 0.95431 0.92358 1.22131 0.98896 0.93049 0.98831 1.21390 0.95609 0.95865 0.97574 1.20332 0.97631 0.95458 0.95631 1.20973 0.95286 0.94057 1.03455 1.23077 0.92259 1.03867 1.01137 1.23107 1.03658 1.02863 0.91489 1.22669 0.97800 0.88122 0.97761 1.67609 1.07424 1.16917 1.24185 1.23434 1.01273 0.98789 0.95064 1.22021 0.89336 1.00649 0.85171 1.44488 1.30531 1.50477 1.07491 1.19048 1.06027 1.16609 0.92916 0.90622 1.24759 0.98765 1.00798 0.96469 1.69770 1.30018 1.46577 1.10985 0.86150 0.79767 0.80606 0.78981 1.21328 1.21603 1.21185 1.21592 0.90316 0.93137 0.93851 0.90828 0.91649 0.93127 0.75618 0.83257 0.84185 0.86526 0.88137 0.88253 0.88063 0.88090 0.82324 0.91766 0.90444 0.87445 0.97051 0.93786 0.95114 0.95061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.41 37.16 0.31 -2.17 16 2 C 0.16 2.97 0.80 -129.98 -0.10 2.86 16 3 N -0.68 -12.19 5.13 -46.74 -0.24 -12.43 16 4 C 0.57 10.18 7.03 -12.18 -0.09 10.09 16 5 O -0.53 -10.53 13.27 5.35 0.07 -10.46 16 6 C 0.08 1.23 6.75 -83.01 -0.56 0.67 16 7 C -0.11 -1.37 9.63 -39.05 -0.38 -1.75 16 8 C -0.08 -0.78 9.88 -39.31 -0.39 -1.17 16 9 C -0.09 -0.85 5.63 -104.36 -0.59 -1.44 16 10 C -0.12 -0.83 6.06 -91.73 -0.56 -1.38 16 11 C -0.17 -1.06 10.17 -26.73 -0.27 -1.34 16 12 C -0.17 -1.03 9.87 -26.70 -0.26 -1.29 16 13 C 0.10 1.08 10.47 -17.57 -0.18 0.89 16 14 N -0.45 -6.41 9.54 -9.80 -0.09 -6.51 16 15 C -0.15 -2.79 6.11 -24.33 -0.15 -2.94 16 16 C 0.15 3.77 5.88 -2.27 -0.01 3.75 16 17 N -0.60 -16.15 3.40 -169.77 -0.58 -16.73 16 18 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 21 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.14 3.19 6.16 -3.06 -0.02 3.17 16 27 H 0.07 1.29 6.20 -51.93 -0.32 0.96 16 28 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.41 6.86 7.81 -40.82 -0.32 6.54 16 31 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.58 6.20 -51.92 -0.32 0.26 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.16 1.39 6.03 -52.49 -0.32 1.08 16 39 H 0.06 1.05 8.06 -51.93 -0.42 0.64 16 40 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 41 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 45 H 0.03 0.79 6.67 -51.93 -0.35 0.44 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -32.99 362.41 -9.84 -42.83 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.50 Total: 5.90 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.50 Total: 1.03 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.35 Total: -62.43 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.99 -9.84 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046809600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.117 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds