Wall clock time and date at job start Tue Mar 31 2020 11:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 110.63957 * 2 1 4 4 C 1.34780 * 120.00309 * 300.69988 * 3 2 1 5 5 O 1.21518 * 119.99528 * 359.97438 * 4 3 2 6 6 C 1.48162 * 120.00277 * 180.02562 * 4 3 2 7 7 C 1.39313 * 119.72513 * 180.02562 * 6 4 3 8 8 C 1.38592 * 119.05755 * 179.76906 * 7 6 4 9 9 C 1.38622 * 118.48944 * 0.47461 * 8 7 6 10 10 C 1.50706 * 120.32356 * 179.75724 * 9 8 7 11 11 C 1.53002 * 117.49668 * 239.72480 * 10 9 8 12 12 C 1.53000 * 60.02940 * 252.51929 * 11 10 9 13 13 C 1.38561 * 119.35192 * 359.48261 * 9 8 7 14 14 N 1.31521 * 120.90331 * 0.29819 * 13 9 8 15 15 C 1.55157 * 110.72058 * 123.14403 * 2 1 3 16 16 C 1.55382 * 101.36646 * 153.94770 * 15 2 1 17 17 N 1.47426 * 104.87292 * 323.01432 * 16 15 2 18 18 C 1.36941 * 125.64978 * 204.10028 * 17 16 15 19 19 H 1.08001 * 120.00435 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99603 * 0.04021 * 18 17 16 21 21 N 1.31615 * 120.00360 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47038 * 59.99683 * 22 20 18 24 24 H 1.48495 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46884 * 300.00123 * 22 20 18 26 26 C 1.47016 * 108.70539 * 24.13507 * 17 16 15 27 27 H 1.09003 * 109.47640 * 59.30044 * 1 2 3 28 28 H 1.09002 * 109.47376 * 179.29796 * 1 2 3 29 29 H 1.09001 * 109.47173 * 299.29961 * 1 2 3 30 30 H 0.96997 * 120.00439 * 120.70444 * 3 2 1 31 31 H 1.08000 * 120.46987 * 0.02562 * 7 6 4 32 32 H 1.08002 * 120.75141 * 180.25192 * 8 7 6 33 33 H 1.09000 * 115.55924 * 25.40885 * 10 9 8 34 34 H 1.09002 * 117.49918 * 145.01964 * 11 10 9 35 35 H 1.09002 * 117.49754 * 0.02562 * 11 10 9 36 36 H 1.09008 * 117.49673 * 107.47884 * 12 11 10 37 37 H 1.08999 * 117.49942 * 252.47315 * 12 11 10 38 38 H 1.07999 * 119.54881 * 180.27504 * 13 9 8 39 39 H 1.09004 * 111.00115 * 272.11336 * 15 2 1 40 40 H 1.08995 * 111.00550 * 35.96616 * 15 2 1 41 41 H 1.09004 * 110.34496 * 204.16648 * 16 15 2 42 42 H 1.09002 * 110.44422 * 81.91552 * 16 15 2 43 43 H 0.97006 * 120.00198 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.88497 * 239.52626 * 26 17 16 45 45 H 1.08996 * 110.01713 * 118.42884 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7263 2.2117 -1.0036 5 8 1.0097 1.8323 -1.9087 6 6 2.2490 3.5980 -1.0039 7 6 1.9140 4.4623 -2.0439 8 6 2.4067 5.7576 -2.0278 9 6 3.2257 6.1405 -0.9769 10 6 3.7888 7.5373 -0.9210 11 6 5.3116 7.6853 -0.9121 12 6 4.5098 7.9578 0.3622 13 6 3.5170 5.2282 0.0245 14 7 3.0321 4.0062 -0.0132 15 6 2.0790 -0.7934 1.2151 16 6 3.4673 -1.2455 0.6837 17 7 3.2470 -1.5461 -0.7427 18 6 4.0076 -2.3901 -1.5072 19 1 3.7632 -2.5439 -2.5479 20 6 5.0926 -3.0482 -0.9444 21 7 5.3906 -2.8606 0.3237 22 14 6.1306 -4.1989 -1.9875 23 1 6.7186 -3.4432 -3.1225 24 1 7.2197 -4.7728 -1.1570 25 1 5.2781 -5.2960 -2.5120 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3634 0.5247 -0.8836 28 1 -0.3634 -1.0276 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 2.6187 1.6737 0.7222 31 1 1.2761 4.1290 -2.8490 32 1 2.1611 6.4517 -2.8179 33 1 3.2122 8.2982 -1.4471 34 1 5.7369 8.5436 -1.4323 35 1 5.9062 6.7724 -0.9472 36 1 4.5766 7.2239 1.1654 37 1 4.4079 8.9952 0.6805 38 1 4.1510 5.5245 0.8470 39 1 2.1821 -0.1490 2.0882 40 1 1.4469 -1.6529 1.4383 41 1 3.8031 -2.1379 1.2120 42 1 4.1969 -0.4432 0.7940 43 1 6.1490 -3.3202 0.7169 44 1 1.3139 -1.4754 -1.5781 45 1 2.3685 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046809600.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:09 Heat of formation + Delta-G solvation = 36.489500 kcal Electronic energy + Delta-G solvation = -26119.685372 eV Core-core repulsion = 22523.952185 eV Total energy + Delta-G solvation = -3595.733187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89928 -40.82269 -38.92094 -37.89913 -35.79558 -33.98382 -33.30991 -32.28142 -31.32265 -30.33428 -27.57237 -26.39607 -25.33246 -24.96549 -23.14718 -22.79854 -22.21100 -21.52870 -20.47876 -19.38461 -18.72811 -18.03294 -17.15017 -16.78239 -16.48765 -16.32461 -16.15630 -15.71225 -15.61323 -15.29847 -14.94500 -14.73259 -14.24507 -14.18304 -14.06137 -13.69947 -13.59371 -13.33113 -13.14883 -12.85363 -12.76742 -12.74402 -12.33734 -12.13344 -12.07026 -12.02303 -11.99817 -11.71649 -11.62073 -11.31671 -11.04799 -10.81847 -10.76244 -10.49981 -10.11965 -9.79718 -8.90911 -7.79574 -5.23910 -0.44920 0.19926 1.43644 1.47285 1.53849 1.65336 2.06941 2.47445 2.69400 3.03999 3.10573 3.29492 3.51809 3.59093 3.68499 3.74971 3.86780 3.88910 3.98656 4.00700 4.12518 4.14769 4.30960 4.32516 4.60706 4.64135 4.68141 4.77231 4.82220 4.85300 4.87833 4.94675 4.99805 5.04133 5.06474 5.08425 5.26869 5.27499 5.31323 5.40734 5.53951 5.57997 5.63934 5.77754 6.28698 6.43436 6.76415 7.08736 7.16384 7.74967 8.39357 9.21778 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003296 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.045934 B = 8494.264424 C = 9412.350985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.165 3.835 3 N -0.686 5.686 4 C 0.566 3.434 5 O -0.561 6.561 6 C 0.047 3.953 7 C -0.113 4.113 8 C -0.074 4.074 9 C -0.074 4.074 10 C -0.126 4.126 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.086 3.914 14 N -0.472 5.472 15 C -0.128 4.128 16 C 0.157 3.843 17 N -0.623 5.623 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.062 4.062 21 N -0.944 5.944 22 Si 0.981 3.019 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.138 3.862 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.412 0.588 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.138 0.862 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.180 0.820 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.079 0.921 42 H -0.013 1.013 43 H 0.249 0.751 44 H 0.028 0.972 45 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 24.084 1.836 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.079 3.921 3 N -0.336 5.336 4 C 0.352 3.648 5 O -0.440 6.440 6 C -0.089 4.089 7 C -0.134 4.134 8 C -0.099 4.099 9 C -0.076 4.076 10 C -0.145 4.145 11 C -0.204 4.204 12 C -0.205 4.205 13 C -0.074 4.074 14 N -0.183 5.183 15 C -0.166 4.166 16 C 0.032 3.968 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.809 3.191 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.011 3.989 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.248 0.752 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.197 0.803 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.005 0.995 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -5.903 23.007 1.884 23.827 hybrid contribution 0.905 -0.262 -1.034 1.399 sum -4.998 22.745 0.849 23.303 Atomic orbital electron populations 1.21973 0.91737 1.03138 1.03046 1.21298 0.94675 0.80380 0.95752 1.45812 1.50794 1.11353 1.25628 1.18247 0.80059 0.84772 0.81751 1.90704 1.39073 1.77410 1.36791 1.21041 0.99002 0.94537 0.94370 1.22240 0.99008 0.94019 0.98096 1.21768 0.94679 0.95065 0.98376 1.20673 0.96085 0.96507 0.94383 1.21085 0.95784 0.92669 1.04926 1.23126 0.91522 1.03956 1.01801 1.23224 1.02370 1.03861 0.91014 1.23121 0.97823 0.87504 0.98994 1.67508 1.07874 1.18560 1.24357 1.23290 0.97636 0.99732 0.95964 1.21820 0.92126 0.98550 0.84297 1.44773 1.31185 1.50520 1.08415 1.19360 1.07120 1.17656 0.93305 0.91096 1.25598 0.99801 1.02266 0.97795 1.70012 1.30087 1.47063 1.12204 0.85122 0.78012 0.78606 0.77381 1.20937 1.21279 1.20174 1.21666 0.89228 0.92720 0.95259 0.92025 0.90732 0.90543 0.75153 0.83385 0.80677 0.84447 0.86540 0.89577 0.88176 0.86330 0.80285 0.88475 0.89229 0.90346 0.99507 0.94124 0.95412 0.97665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.41 71.98 0.61 -3.87 16 2 C 0.17 6.27 0.80 4.79 0.00 6.27 16 3 N -0.69 -24.79 5.13 -420.08 -2.16 -26.95 16 4 C 0.57 20.80 7.03 86.88 0.61 21.41 16 5 O -0.56 -22.99 13.27 -3.77 -0.05 -23.04 16 6 C 0.05 1.46 6.75 41.91 0.28 1.74 16 7 C -0.11 -2.82 9.63 22.61 0.22 -2.60 16 8 C -0.07 -1.30 9.88 22.45 0.22 -1.08 16 9 C -0.07 -1.27 5.63 -19.69 -0.11 -1.38 16 10 C -0.13 -1.34 6.06 -11.51 -0.07 -1.41 16 11 C -0.17 -1.67 10.17 30.60 0.31 -1.36 16 12 C -0.17 -1.45 9.87 30.62 0.30 -1.14 16 13 C 0.09 1.82 10.47 84.82 0.89 2.71 16 14 N -0.47 -13.41 9.54 -184.92 -1.76 -15.17 16 15 C -0.13 -4.77 6.11 32.15 0.20 -4.57 16 16 C 0.16 7.93 5.88 87.02 0.51 8.44 16 17 N -0.62 -34.49 3.40 -691.02 -2.35 -36.84 16 18 C -0.25 -14.71 10.27 84.03 0.86 -13.85 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 21 N -0.94 -57.18 10.09 21.65 0.22 -56.96 16 22 Si 0.98 47.31 29.55 68.60 2.03 49.33 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 C 0.14 6.60 6.16 86.73 0.53 7.13 16 27 H 0.06 2.14 6.20 -2.39 -0.01 2.12 16 28 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.41 14.03 7.81 -92.71 -0.72 13.30 16 31 H 0.15 3.63 7.64 -2.91 -0.02 3.61 16 32 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 0.89 6.20 -2.38 -0.01 0.88 16 37 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 38 H 0.18 2.86 6.03 -2.91 -0.02 2.84 16 39 H 0.10 3.00 8.06 -2.39 -0.02 2.99 16 40 H 0.09 3.16 8.05 -2.39 -0.02 3.14 16 41 H 0.08 4.44 5.87 -2.39 -0.01 4.43 16 42 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 44 H 0.03 1.34 7.80 -2.38 -0.02 1.32 16 45 H 0.01 0.28 6.67 -2.39 -0.02 0.27 16 Total: -1.00 -74.55 362.41 2.05 -72.50 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.29 Total: 23.85 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.83 Total: 13.28 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -6.05 Total: -135.91 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -74.55 2.05 -72.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046809600.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.987 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds