Wall clock time and date at job start Tue Mar 31 2020 11:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38402 * 120.85533 * 2 1 4 4 C 1.38314 * 119.30031 * 179.97438 * 3 2 1 5 5 N 1.31952 * 121.08637 * 359.97438 * 4 3 2 6 6 C 1.31670 * 121.87621 * 359.97438 * 5 4 3 7 7 C 1.39558 * 120.56593 * 0.02562 * 6 5 4 8 8 C 1.47841 * 120.55716 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00151 * 203.15069 * 8 7 6 10 10 N 1.34778 * 120.00091 * 23.15055 * 8 7 6 11 11 C 1.46503 * 119.99921 * 184.26591 * 10 8 7 12 12 H 1.08999 * 109.32073 * 50.75761 * 11 10 8 13 13 C 1.53028 * 109.32412 * 291.11492 * 11 10 8 14 14 C 1.53974 * 108.82589 * 295.14308 * 13 11 10 15 15 H 1.08994 * 112.99166 * 168.09090 * 14 13 11 16 16 C 1.55427 * 106.41539 * 293.81848 * 14 13 11 17 17 C 1.55177 * 100.35252 * 73.37891 * 16 14 13 18 18 H 1.08997 * 112.48196 * 162.66823 * 17 16 14 19 19 C 1.52986 * 109.32493 * 170.22640 * 11 10 8 20 20 N 1.47788 * 104.24924 * 40.55222 * 17 16 14 21 21 C 1.36941 * 125.85198 * 153.55645 * 20 17 16 22 22 H 1.07995 * 120.00248 * 14.36467 * 21 20 17 23 23 C 1.38818 * 119.99923 * 194.36432 * 21 20 17 24 24 N 1.31617 * 119.99503 * 7.38071 * 23 21 20 25 25 Si 1.86794 * 120.00236 * 187.38089 * 23 21 20 26 26 H 1.48507 * 109.47074 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47509 * 119.99925 * 25 23 21 28 28 H 1.48502 * 109.47032 * 240.00077 * 25 23 21 29 29 C 1.47080 * 108.29082 * 333.52853 * 20 17 16 30 30 H 1.08997 * 109.46933 * 96.22738 * 1 2 3 31 31 H 1.09000 * 109.47392 * 216.22642 * 1 2 3 32 32 H 1.08999 * 109.47321 * 336.22861 * 1 2 3 33 33 H 1.07998 * 120.34857 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.45224 * 179.72048 * 4 3 2 35 35 H 1.08003 * 119.71249 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00322 * 4.26568 * 10 8 7 37 37 H 1.08999 * 109.57922 * 54.94811 * 13 11 10 38 38 H 1.09003 * 109.57879 * 175.21151 * 13 11 10 39 39 H 1.08998 * 111.23676 * 191.15743 * 16 14 13 40 40 H 1.09002 * 111.23529 * 315.60850 * 16 14 13 41 41 H 1.08996 * 109.53426 * 185.06381 * 19 11 10 42 42 H 1.09004 * 109.52965 * 305.28837 * 19 11 10 43 43 H 0.97009 * 119.99429 * 180.02562 * 24 23 21 44 44 H 1.09002 * 109.97704 * 241.74899 * 29 20 17 45 45 H 1.09001 * 110.00437 * 120.48580 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1536 0.0026 7 6 2.2249 -1.2017 0.0021 8 6 1.5176 -2.4999 0.0039 9 8 0.3770 -2.5712 -0.4103 10 7 2.1374 -3.6044 0.4647 11 6 1.4719 -4.9069 0.3804 12 1 1.1150 -5.0642 -0.6374 13 6 0.2830 -4.9314 1.3435 14 6 0.8099 -4.8217 2.7862 15 1 0.0221 -4.6254 3.5134 16 6 1.6109 -6.1249 3.0615 17 6 2.8823 -5.8551 2.2137 18 1 3.7139 -6.5025 2.4919 19 6 2.4699 -6.0095 0.7392 20 7 3.1776 -4.4257 2.4455 21 6 4.4109 -3.8370 2.3579 22 1 5.2265 -4.3605 1.8814 23 6 4.6127 -2.5674 2.8816 24 7 3.6650 -1.9888 3.5883 25 14 6.2292 -1.6801 2.5834 26 1 7.1224 -2.5400 1.7659 27 1 5.9701 -0.4081 1.8624 28 1 6.8806 -1.3873 3.8854 29 6 1.9196 -3.7438 2.7857 30 1 -0.3633 -0.1115 -1.0216 31 1 -0.3634 -0.8290 0.6073 32 1 -0.3634 0.9405 0.4142 33 1 1.6966 2.1346 -0.0004 34 1 4.1558 2.0762 -0.0040 35 1 4.1871 -2.0726 0.0030 36 1 3.0240 -3.5371 0.8522 37 1 -0.3769 -4.0903 1.1307 38 1 -0.2655 -5.8656 1.2230 39 1 1.8550 -6.2222 4.1193 40 1 1.0742 -7.0020 2.7000 41 1 2.0050 -6.9841 0.5909 42 1 3.3512 -5.9243 0.1034 43 1 3.8059 -1.1014 3.9539 44 1 1.6967 -2.9801 2.0406 45 1 1.9973 -3.2888 3.7732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047046067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:25 Heat of formation + Delta-G solvation = 75.637618 kcal Electronic energy + Delta-G solvation = -29133.926709 eV Core-core repulsion = 25539.891111 eV Total energy + Delta-G solvation = -3594.035597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92003 -39.66613 -37.65903 -33.79709 -33.57936 -33.01511 -31.18817 -30.74441 -30.13410 -28.06696 -27.23258 -25.26789 -23.98685 -23.19287 -22.12830 -21.27684 -19.94444 -19.55171 -18.74118 -17.37839 -16.76383 -16.18139 -15.82434 -15.35796 -14.92516 -14.54166 -14.49013 -14.08972 -13.55220 -13.48807 -13.01915 -12.67778 -12.52195 -12.45616 -12.31193 -12.26383 -12.03599 -11.89597 -11.68657 -11.65542 -11.45550 -11.41903 -10.82786 -10.80455 -10.61328 -10.04812 -9.88369 -9.72554 -9.63571 -9.51659 -9.27006 -9.06313 -8.88710 -8.70187 -8.65782 -7.52375 -6.88695 -5.83465 -3.32440 1.21961 1.65187 3.39350 3.44316 3.48260 3.58068 3.99393 4.36145 4.40086 4.83300 5.04121 5.12469 5.22072 5.23239 5.29071 5.38778 5.46413 5.55539 5.61304 5.76944 5.81784 5.87045 5.91498 5.93612 6.01836 6.08694 6.11914 6.16434 6.25754 6.27800 6.28827 6.42360 6.45643 6.61630 6.68985 6.75796 6.81714 6.90310 6.94605 7.04343 7.39750 7.45988 7.61861 7.79031 8.15683 8.35635 8.56029 9.01004 9.14220 9.63622 10.32907 11.16421 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.008531 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.913724 B = 3281.317947 C = 4796.869494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.008 3.992 3 C -0.192 4.192 4 C 0.112 3.888 5 N -0.487 5.487 6 C 0.159 3.841 7 C -0.172 4.172 8 C 0.550 3.450 9 O -0.564 6.564 10 N -0.686 5.686 11 C 0.162 3.838 12 H 0.061 0.939 13 C -0.124 4.124 14 C -0.117 4.117 15 H 0.074 0.926 16 C -0.126 4.126 17 C 0.148 3.852 18 H 0.067 0.933 19 C -0.141 4.141 20 N -0.591 5.591 21 C -0.273 4.273 22 H 0.080 0.920 23 C 0.017 3.983 24 N -0.890 5.890 25 Si 0.877 3.123 26 H -0.279 1.279 27 H -0.252 1.252 28 H -0.295 1.295 29 C 0.136 3.864 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.437 0.563 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.254 0.746 44 H 0.059 0.941 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 -0.258 -5.732 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.000 4.000 3 C -0.212 4.212 4 C -0.044 4.044 5 N -0.196 5.196 6 C 0.001 3.999 7 C -0.177 4.177 8 C 0.336 3.664 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.057 3.943 12 H 0.079 0.921 13 C -0.163 4.163 14 C -0.136 4.136 15 H 0.093 0.907 16 C -0.165 4.165 17 C 0.040 3.960 18 H 0.085 0.915 19 C -0.181 4.181 20 N -0.317 5.317 21 C -0.400 4.400 22 H 0.097 0.903 23 C -0.184 4.184 24 N -0.533 5.533 25 Si 0.705 3.295 26 H -0.204 1.204 27 H -0.176 1.176 28 H -0.222 1.222 29 C 0.012 3.988 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.293 0.707 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.366 -0.095 -5.926 7.361 hybrid contribution 0.423 0.480 0.412 0.761 sum -3.943 0.385 -5.514 6.790 Atomic orbital electron populations 1.20842 0.89743 1.02537 1.03358 1.20335 0.97019 0.91558 0.91105 1.21882 0.95550 0.98187 1.05581 1.22796 0.91643 0.96400 0.93563 1.67734 1.40700 0.98241 1.12897 1.22971 0.90613 0.96365 0.89960 1.20869 0.95257 0.94490 1.07056 1.18026 0.85983 0.84208 0.78202 1.90639 1.17835 1.86447 1.49703 1.47637 1.24045 1.05341 1.58197 1.20620 0.92630 0.83298 0.97756 0.92141 1.22090 0.97338 1.01517 0.95326 1.22764 0.98160 0.97333 0.95359 0.90749 1.22962 0.97152 0.96598 0.99765 1.21640 0.94718 0.88123 0.91507 0.91505 1.22522 0.98448 0.96806 1.00325 1.44951 1.04240 1.01828 1.80715 1.19095 0.87734 0.99254 1.33914 0.90266 1.24936 0.97468 0.98259 0.97693 1.69973 1.32141 1.15247 1.35979 0.86634 0.83062 0.82063 0.77722 1.20372 1.17589 1.22209 1.22150 0.82055 0.92728 1.01848 0.90367 0.89652 0.92327 0.84974 0.83198 0.82523 0.70677 0.90954 0.92506 0.92127 0.92275 0.91693 0.92031 0.93579 0.92308 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 8.70 36.00 0.31 -1.38 16 2 C 0.01 0.15 5.95 -103.91 -0.62 -0.47 16 3 C -0.19 -2.96 9.78 -39.49 -0.39 -3.35 16 4 C 0.11 1.85 11.17 -17.47 -0.20 1.65 16 5 N -0.49 -9.56 9.58 -12.91 -0.12 -9.68 16 6 C 0.16 3.23 9.77 -17.13 -0.17 3.06 16 7 C -0.17 -3.43 5.87 -104.82 -0.62 -4.05 16 8 C 0.55 11.34 5.61 -12.33 -0.07 11.27 16 9 O -0.56 -11.97 12.76 5.32 0.07 -11.90 16 10 N -0.69 -13.81 2.67 -54.74 -0.15 -13.96 16 11 C 0.16 2.91 2.73 -67.92 -0.19 2.72 16 12 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 13 C -0.12 -2.17 5.14 -26.21 -0.13 -2.31 16 14 C -0.12 -2.19 4.33 -87.93 -0.38 -2.57 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.13 -2.17 6.18 -24.29 -0.15 -2.32 16 17 C 0.15 2.76 4.30 -65.61 -0.28 2.48 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 19 C -0.14 -2.32 5.42 -26.28 -0.14 -2.46 16 20 N -0.59 -13.21 1.76 -161.37 -0.28 -13.49 16 21 C -0.27 -6.66 8.39 -15.06 -0.13 -6.78 16 22 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 23 C 0.02 0.44 5.20 -17.43 -0.09 0.35 16 24 N -0.89 -23.77 10.60 55.49 0.59 -23.18 16 25 Si 0.88 20.45 29.02 -169.99 -4.93 15.51 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.25 -5.84 6.32 56.52 0.36 -5.49 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 C 0.14 3.08 4.23 -2.83 -0.01 3.07 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.52 6.51 -51.93 -0.34 1.18 16 32 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.16 3.27 7.09 -52.48 -0.37 2.90 16 36 H 0.44 9.38 2.66 -40.82 -0.11 9.27 16 37 H 0.07 1.39 6.60 -51.93 -0.34 1.04 16 38 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 41 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.06 1.41 3.94 -58.47 -0.23 1.18 16 45 H 0.06 1.64 6.51 -51.93 -0.34 1.30 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -28.05 335.88 -9.36 -37.41 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -6.35 Total: 15.31 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.24 Total: -1.08 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.03 Total: -60.32 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.93 Total: 15.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.05 -9.36 -37.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047046067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.047 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds