Wall clock time and date at job start Tue Mar 31 2020 11:31:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38402 * 120.85533 * 2 1
4 4 C 1.38314 * 119.30031 * 179.97438 * 3 2 1
5 5 N 1.31952 * 121.08637 * 359.97438 * 4 3 2
6 6 C 1.31670 * 121.87621 * 359.97438 * 5 4 3
7 7 C 1.39558 * 120.56593 * 0.02562 * 6 5 4
8 8 C 1.47841 * 120.55716 * 180.02562 * 7 6 5
9 9 O 1.21551 * 120.00151 * 203.15069 * 8 7 6
10 10 N 1.34778 * 120.00091 * 23.15055 * 8 7 6
11 11 C 1.46503 * 119.99921 * 184.26591 * 10 8 7
12 12 H 1.08999 * 109.32073 * 50.75761 * 11 10 8
13 13 C 1.53028 * 109.32412 * 291.11492 * 11 10 8
14 14 C 1.53974 * 108.82589 * 295.14308 * 13 11 10
15 15 H 1.08994 * 112.99166 * 168.09090 * 14 13 11
16 16 C 1.55427 * 106.41539 * 293.81848 * 14 13 11
17 17 C 1.55177 * 100.35252 * 73.37891 * 16 14 13
18 18 H 1.08997 * 112.48196 * 162.66823 * 17 16 14
19 19 C 1.52986 * 109.32493 * 170.22640 * 11 10 8
20 20 N 1.47788 * 104.24924 * 40.55222 * 17 16 14
21 21 C 1.36941 * 125.85198 * 153.55645 * 20 17 16
22 22 H 1.07995 * 120.00248 * 14.36467 * 21 20 17
23 23 C 1.38818 * 119.99923 * 194.36432 * 21 20 17
24 24 N 1.31617 * 119.99503 * 7.38071 * 23 21 20
25 25 Si 1.86794 * 120.00236 * 187.38089 * 23 21 20
26 26 H 1.48507 * 109.47074 * 359.97438 * 25 23 21
27 27 H 1.48499 * 109.47509 * 119.99925 * 25 23 21
28 28 H 1.48502 * 109.47032 * 240.00077 * 25 23 21
29 29 C 1.47080 * 108.29082 * 333.52853 * 20 17 16
30 30 H 1.08997 * 109.46933 * 96.22738 * 1 2 3
31 31 H 1.09000 * 109.47392 * 216.22642 * 1 2 3
32 32 H 1.08999 * 109.47321 * 336.22861 * 1 2 3
33 33 H 1.07998 * 120.34857 * 359.97438 * 3 2 1
34 34 H 1.07998 * 119.45224 * 179.72048 * 4 3 2
35 35 H 1.08003 * 119.71249 * 179.97438 * 6 5 4
36 36 H 0.96996 * 120.00322 * 4.26568 * 10 8 7
37 37 H 1.08999 * 109.57922 * 54.94811 * 13 11 10
38 38 H 1.09003 * 109.57879 * 175.21151 * 13 11 10
39 39 H 1.08998 * 111.23676 * 191.15743 * 16 14 13
40 40 H 1.09002 * 111.23529 * 315.60850 * 16 14 13
41 41 H 1.08996 * 109.53426 * 185.06381 * 19 11 10
42 42 H 1.09004 * 109.52965 * 305.28837 * 19 11 10
43 43 H 0.97009 * 119.99429 * 180.02562 * 24 23 21
44 44 H 1.09002 * 109.97704 * 241.74899 * 29 20 17
45 45 H 1.09001 * 110.00437 * 120.48580 * 29 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5994 1.1506 0.0005
5 7 4.2498 0.0025 0.0016
6 6 3.6197 -1.1536 0.0026
7 6 2.2249 -1.2017 0.0021
8 6 1.5176 -2.4999 0.0039
9 8 0.3770 -2.5712 -0.4103
10 7 2.1374 -3.6044 0.4647
11 6 1.4719 -4.9069 0.3804
12 1 1.1150 -5.0642 -0.6374
13 6 0.2830 -4.9314 1.3435
14 6 0.8099 -4.8217 2.7862
15 1 0.0221 -4.6254 3.5134
16 6 1.6109 -6.1249 3.0615
17 6 2.8823 -5.8551 2.2137
18 1 3.7139 -6.5025 2.4919
19 6 2.4699 -6.0095 0.7392
20 7 3.1776 -4.4257 2.4455
21 6 4.4109 -3.8370 2.3579
22 1 5.2265 -4.3605 1.8814
23 6 4.6127 -2.5674 2.8816
24 7 3.6650 -1.9888 3.5883
25 14 6.2292 -1.6801 2.5834
26 1 7.1224 -2.5400 1.7659
27 1 5.9701 -0.4081 1.8624
28 1 6.8806 -1.3873 3.8854
29 6 1.9196 -3.7438 2.7857
30 1 -0.3633 -0.1115 -1.0216
31 1 -0.3634 -0.8290 0.6073
32 1 -0.3634 0.9405 0.4142
33 1 1.6966 2.1346 -0.0004
34 1 4.1558 2.0762 -0.0040
35 1 4.1871 -2.0726 0.0030
36 1 3.0240 -3.5371 0.8522
37 1 -0.3769 -4.0903 1.1307
38 1 -0.2655 -5.8656 1.2230
39 1 1.8550 -6.2222 4.1193
40 1 1.0742 -7.0020 2.7000
41 1 2.0050 -6.9841 0.5909
42 1 3.3512 -5.9243 0.1034
43 1 3.8059 -1.1014 3.9539
44 1 1.6967 -2.9801 2.0406
45 1 1.9973 -3.2888 3.7732
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001047046067.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:24
Heat of formation + Delta-G solvation = 60.933971 kcal
Electronic energy + Delta-G solvation = -29134.564307 eV
Core-core repulsion = 25539.891111 eV
Total energy + Delta-G solvation = -3594.673195 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.43259 -41.07378 -39.19247 -35.47547 -35.10853 -34.47144 -32.70736 -32.31415
-31.67661 -29.55366 -28.60846 -27.01334 -25.39670 -24.84531 -23.51626 -22.67770
-21.50513 -21.14953 -20.25052 -18.99423 -18.41498 -17.62065 -17.19138 -16.91702
-16.57336 -16.15888 -16.04717 -15.47827 -15.25009 -14.92067 -14.48251 -14.19682
-13.93553 -13.92912 -13.76311 -13.64881 -13.45161 -13.37651 -13.26289 -13.12247
-12.97582 -12.75459 -12.61189 -12.55946 -12.21314 -11.85652 -11.65269 -11.31602
-11.09004 -11.02685 -10.74210 -10.70381 -10.43259 -10.20241 -10.08751 -9.09891
-8.72644 -7.77757 -5.25234 -0.17871 0.28461 1.47324 1.53834 1.67109
1.98024 2.50491 2.55938 2.94270 3.34658 3.48510 3.65821 3.77201
3.79890 3.83757 3.99744 4.03010 4.09054 4.19097 4.38172 4.45722
4.47617 4.54207 4.59362 4.67321 4.75468 4.78814 4.81350 4.89256
4.91794 4.93364 5.09558 5.15585 5.16899 5.27926 5.35465 5.40078
5.43366 5.53074 5.60752 5.71744 5.78760 5.89488 5.93996 6.26385
6.93946 6.98634 7.13302 7.52630 7.79022 8.46567 9.20245
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.012246 B = 0.008531 C = 0.005836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2285.913724 B = 3281.317947 C = 4796.869494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.007 4.007
3 C -0.177 4.177
4 C 0.107 3.893
5 N -0.512 5.512
6 C 0.146 3.854
7 C -0.197 4.197
8 C 0.544 3.456
9 O -0.577 6.577
10 N -0.691 5.691
11 C 0.152 3.848
12 H 0.067 0.933
13 C -0.114 4.114
14 C -0.115 4.115
15 H 0.080 0.920
16 C -0.113 4.113
17 C 0.137 3.863
18 H 0.071 0.929
19 C -0.129 4.129
20 N -0.601 5.601
21 C -0.263 4.263
22 H 0.080 0.920
23 C -0.015 4.015
24 N -0.913 5.913
25 Si 0.918 3.082
26 H -0.274 1.274
27 H -0.252 1.252
28 H -0.311 1.311
29 C 0.144 3.856
30 H 0.084 0.916
31 H 0.057 0.943
32 H 0.090 0.910
33 H 0.177 0.823
34 H 0.188 0.812
35 H 0.139 0.861
36 H 0.430 0.570
37 H 0.050 0.950
38 H 0.092 0.908
39 H 0.051 0.949
40 H 0.099 0.901
41 H 0.105 0.895
42 H 0.057 0.943
43 H 0.242 0.758
44 H 0.043 0.957
45 H 0.014 0.986
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.648 -0.772 -6.701 8.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.015 4.015
3 C -0.196 4.196
4 C -0.049 4.049
5 N -0.222 5.222
6 C -0.012 4.012
7 C -0.202 4.202
8 C 0.331 3.669
9 O -0.461 6.461
10 N -0.356 5.356
11 C 0.048 3.952
12 H 0.085 0.915
13 C -0.152 4.152
14 C -0.134 4.134
15 H 0.098 0.902
16 C -0.151 4.151
17 C 0.031 3.969
18 H 0.089 0.911
19 C -0.169 4.169
20 N -0.328 5.328
21 C -0.392 4.392
22 H 0.098 0.902
23 C -0.213 4.213
24 N -0.559 5.559
25 Si 0.746 3.254
26 H -0.199 1.199
27 H -0.176 1.176
28 H -0.240 1.240
29 C 0.020 3.980
30 H 0.102 0.898
31 H 0.076 0.924
32 H 0.109 0.891
33 H 0.194 0.806
34 H 0.205 0.795
35 H 0.156 0.844
36 H 0.285 0.715
37 H 0.069 0.931
38 H 0.110 0.890
39 H 0.069 0.931
40 H 0.117 0.883
41 H 0.123 0.877
42 H 0.076 0.924
43 H 0.052 0.948
44 H 0.061 0.939
45 H 0.033 0.967
Dipole moment (debyes) X Y Z Total
from point charges -5.332 -0.659 -6.919 8.760
hybrid contribution 0.729 0.660 0.693 1.203
sum -4.604 0.001 -6.226 7.743
Atomic orbital electron populations
1.20796 0.88417 1.03078 1.03386 1.20751 0.98190 0.91671 0.90933
1.22322 0.95239 0.99085 1.02979 1.23484 0.92689 0.96591 0.92176
1.67696 1.41653 0.98949 1.13899 1.22694 0.90726 0.96290 0.91486
1.21002 0.95390 0.95241 1.08555 1.18219 0.85925 0.84724 0.78019
1.90607 1.18210 1.86742 1.50526 1.47716 1.23796 1.06217 1.57834
1.20888 0.93181 0.82835 0.98336 0.91483 1.22005 0.96915 1.02401
0.93900 1.22723 0.97200 0.96813 0.96670 0.90210 1.22923 0.96084
0.97001 0.99129 1.21925 0.95753 0.85835 0.93426 0.91125 1.22430
0.98233 0.98106 0.98120 1.45053 1.03462 1.03775 1.80507 1.19255
0.88497 0.99127 1.32280 0.90241 1.25267 0.98802 0.98942 0.98252
1.70162 1.33222 1.14797 1.37691 0.86010 0.81261 0.81572 0.76537
1.19882 1.17610 1.23989 1.21912 0.83722 0.93877 0.98530 0.89754
0.92402 0.89127 0.80564 0.79518 0.84374 0.71515 0.93109 0.88981
0.93059 0.88277 0.87677 0.92380 0.94833 0.93903 0.96744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.04 8.70 71.24 0.62 -2.42 16
2 C -0.01 -0.24 5.95 -19.40 -0.12 -0.35 16
3 C -0.18 -5.04 9.78 22.33 0.22 -4.82 16
4 C 0.11 3.31 11.17 84.69 0.95 4.26 16
5 N -0.51 -20.10 9.58 -194.75 -1.87 -21.97 16
6 C 0.15 6.08 9.77 85.04 0.83 6.92 16
7 C -0.20 -8.03 5.87 -19.99 -0.12 -8.15 16
8 C 0.54 22.96 5.61 86.79 0.49 23.45 16
9 O -0.58 -24.83 12.76 -3.88 -0.05 -24.88 16
10 N -0.69 -28.13 2.67 -445.38 -1.19 -29.32 16
11 C 0.15 5.21 2.73 45.00 0.12 5.34 16
12 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16
13 C -0.11 -3.75 5.14 30.93 0.16 -3.59 16
14 C -0.11 -4.16 4.33 -9.05 -0.04 -4.20 16
15 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16
16 C -0.11 -3.56 6.18 32.18 0.20 -3.37 16
17 C 0.14 4.84 4.30 45.79 0.20 5.04 16
18 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
19 C -0.13 -3.89 5.42 30.89 0.17 -3.72 16
20 N -0.60 -27.01 1.76 -664.45 -1.17 -28.18 16
21 C -0.26 -13.08 8.39 84.03 0.71 -12.37 16
22 H 0.08 3.87 7.84 -2.91 -0.02 3.85 16
23 C -0.01 -0.76 5.20 84.86 0.44 -0.32 16
24 N -0.91 -50.73 10.60 21.65 0.23 -50.50 16
25 Si 0.92 43.19 29.02 68.60 1.99 45.18 16
26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
27 H -0.25 -11.75 6.32 99.48 0.63 -11.12 16
28 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16
29 C 0.14 6.67 4.23 86.85 0.37 7.03 16
30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
31 H 0.06 2.08 6.51 -2.39 -0.02 2.06 16
32 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16
33 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16
34 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16
35 H 0.14 6.09 7.09 -2.91 -0.02 6.06 16
36 H 0.43 18.87 2.66 -92.71 -0.25 18.62 16
37 H 0.05 1.91 6.60 -2.39 -0.02 1.89 16
38 H 0.09 2.40 7.98 -2.39 -0.02 2.38 16
39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
40 H 0.10 2.38 7.75 -2.39 -0.02 2.36 16
41 H 0.10 2.37 8.00 -2.39 -0.02 2.35 16
42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16
43 H 0.24 13.57 8.31 -92.70 -0.77 12.80 16
44 H 0.04 2.14 3.94 -15.30 -0.06 2.08 16
45 H 0.01 0.80 6.51 -2.39 -0.02 0.79 16
Total: -1.00 -64.08 335.88 3.77 -60.31
By element:
Atomic # 1 Polarization: 39.99 SS G_CDS: 0.64 Total: 40.63 kcal
Atomic # 6 Polarization: 3.55 SS G_CDS: 5.19 Total: 8.74 kcal
Atomic # 7 Polarization: -125.97 SS G_CDS: -4.00 Total: -129.97 kcal
Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 1.99 Total: 45.18 kcal
Total: -64.08 3.77 -60.31 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047046067.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.241 kcal
(2) G-P(sol) polarization free energy of solvation -64.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.164 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds