Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38402 * 120.85533 * 2 1 4 4 C 1.38314 * 119.30031 * 179.97438 * 3 2 1 5 5 N 1.31952 * 121.08637 * 359.97438 * 4 3 2 6 6 C 1.31670 * 121.87621 * 359.97438 * 5 4 3 7 7 C 1.39558 * 120.56593 * 0.02562 * 6 5 4 8 8 C 1.47841 * 120.55716 * 180.02562 * 7 6 5 9 9 O 1.21551 * 120.00151 * 203.15069 * 8 7 6 10 10 N 1.34778 * 120.00091 * 23.15055 * 8 7 6 11 11 C 1.46503 * 119.99921 * 184.26591 * 10 8 7 12 12 H 1.08999 * 109.32073 * 50.75761 * 11 10 8 13 13 C 1.53028 * 109.32412 * 291.11492 * 11 10 8 14 14 C 1.53974 * 108.82589 * 295.14308 * 13 11 10 15 15 H 1.08994 * 112.99166 * 168.09090 * 14 13 11 16 16 C 1.55427 * 106.41539 * 293.81848 * 14 13 11 17 17 C 1.55177 * 100.35252 * 73.37891 * 16 14 13 18 18 H 1.08997 * 112.48196 * 162.66823 * 17 16 14 19 19 C 1.52986 * 109.32493 * 170.22640 * 11 10 8 20 20 N 1.47788 * 104.24924 * 40.55222 * 17 16 14 21 21 C 1.36941 * 125.85198 * 153.55645 * 20 17 16 22 22 H 1.07995 * 120.00248 * 14.36467 * 21 20 17 23 23 C 1.38818 * 119.99923 * 194.36432 * 21 20 17 24 24 N 1.31617 * 119.99503 * 7.38071 * 23 21 20 25 25 Si 1.86794 * 120.00236 * 187.38089 * 23 21 20 26 26 H 1.48507 * 109.47074 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47509 * 119.99925 * 25 23 21 28 28 H 1.48502 * 109.47032 * 240.00077 * 25 23 21 29 29 C 1.47080 * 108.29082 * 333.52853 * 20 17 16 30 30 H 1.08997 * 109.46933 * 96.22738 * 1 2 3 31 31 H 1.09000 * 109.47392 * 216.22642 * 1 2 3 32 32 H 1.08999 * 109.47321 * 336.22861 * 1 2 3 33 33 H 1.07998 * 120.34857 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.45224 * 179.72048 * 4 3 2 35 35 H 1.08003 * 119.71249 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00322 * 4.26568 * 10 8 7 37 37 H 1.08999 * 109.57922 * 54.94811 * 13 11 10 38 38 H 1.09003 * 109.57879 * 175.21151 * 13 11 10 39 39 H 1.08998 * 111.23676 * 191.15743 * 16 14 13 40 40 H 1.09002 * 111.23529 * 315.60850 * 16 14 13 41 41 H 1.08996 * 109.53426 * 185.06381 * 19 11 10 42 42 H 1.09004 * 109.52965 * 305.28837 * 19 11 10 43 43 H 0.97009 * 119.99429 * 180.02562 * 24 23 21 44 44 H 1.09002 * 109.97704 * 241.74899 * 29 20 17 45 45 H 1.09001 * 110.00437 * 120.48580 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1536 0.0026 7 6 2.2249 -1.2017 0.0021 8 6 1.5176 -2.4999 0.0039 9 8 0.3770 -2.5712 -0.4103 10 7 2.1374 -3.6044 0.4647 11 6 1.4719 -4.9069 0.3804 12 1 1.1150 -5.0642 -0.6374 13 6 0.2830 -4.9314 1.3435 14 6 0.8099 -4.8217 2.7862 15 1 0.0221 -4.6254 3.5134 16 6 1.6109 -6.1249 3.0615 17 6 2.8823 -5.8551 2.2137 18 1 3.7139 -6.5025 2.4919 19 6 2.4699 -6.0095 0.7392 20 7 3.1776 -4.4257 2.4455 21 6 4.4109 -3.8370 2.3579 22 1 5.2265 -4.3605 1.8814 23 6 4.6127 -2.5674 2.8816 24 7 3.6650 -1.9888 3.5883 25 14 6.2292 -1.6801 2.5834 26 1 7.1224 -2.5400 1.7659 27 1 5.9701 -0.4081 1.8624 28 1 6.8806 -1.3873 3.8854 29 6 1.9196 -3.7438 2.7857 30 1 -0.3633 -0.1115 -1.0216 31 1 -0.3634 -0.8290 0.6073 32 1 -0.3634 0.9405 0.4142 33 1 1.6966 2.1346 -0.0004 34 1 4.1558 2.0762 -0.0040 35 1 4.1871 -2.0726 0.0030 36 1 3.0240 -3.5371 0.8522 37 1 -0.3769 -4.0903 1.1307 38 1 -0.2655 -5.8656 1.2230 39 1 1.8550 -6.2222 4.1193 40 1 1.0742 -7.0020 2.7000 41 1 2.0050 -6.9841 0.5909 42 1 3.3512 -5.9243 0.1034 43 1 3.8059 -1.1014 3.9539 44 1 1.6967 -2.9801 2.0406 45 1 1.9973 -3.2888 3.7732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047046067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = 60.933971 kcal Electronic energy + Delta-G solvation = -29134.564307 eV Core-core repulsion = 25539.891111 eV Total energy + Delta-G solvation = -3594.673195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43259 -41.07378 -39.19247 -35.47547 -35.10853 -34.47144 -32.70736 -32.31415 -31.67661 -29.55366 -28.60846 -27.01334 -25.39670 -24.84531 -23.51626 -22.67770 -21.50513 -21.14953 -20.25052 -18.99423 -18.41498 -17.62065 -17.19138 -16.91702 -16.57336 -16.15888 -16.04717 -15.47827 -15.25009 -14.92067 -14.48251 -14.19682 -13.93553 -13.92912 -13.76311 -13.64881 -13.45161 -13.37651 -13.26289 -13.12247 -12.97582 -12.75459 -12.61189 -12.55946 -12.21314 -11.85652 -11.65269 -11.31602 -11.09004 -11.02685 -10.74210 -10.70381 -10.43259 -10.20241 -10.08751 -9.09891 -8.72644 -7.77757 -5.25234 -0.17871 0.28461 1.47324 1.53834 1.67109 1.98024 2.50491 2.55938 2.94270 3.34658 3.48510 3.65821 3.77201 3.79890 3.83757 3.99744 4.03010 4.09054 4.19097 4.38172 4.45722 4.47617 4.54207 4.59362 4.67321 4.75468 4.78814 4.81350 4.89256 4.91794 4.93364 5.09558 5.15585 5.16899 5.27926 5.35465 5.40078 5.43366 5.53074 5.60752 5.71744 5.78760 5.89488 5.93996 6.26385 6.93946 6.98634 7.13302 7.52630 7.79022 8.46567 9.20245 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012246 B = 0.008531 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.913724 B = 3281.317947 C = 4796.869494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.007 4.007 3 C -0.177 4.177 4 C 0.107 3.893 5 N -0.512 5.512 6 C 0.146 3.854 7 C -0.197 4.197 8 C 0.544 3.456 9 O -0.577 6.577 10 N -0.691 5.691 11 C 0.152 3.848 12 H 0.067 0.933 13 C -0.114 4.114 14 C -0.115 4.115 15 H 0.080 0.920 16 C -0.113 4.113 17 C 0.137 3.863 18 H 0.071 0.929 19 C -0.129 4.129 20 N -0.601 5.601 21 C -0.263 4.263 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.913 5.913 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.252 1.252 28 H -0.311 1.311 29 C 0.144 3.856 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.139 0.861 36 H 0.430 0.570 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.242 0.758 44 H 0.043 0.957 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -0.772 -6.701 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 C -0.196 4.196 4 C -0.049 4.049 5 N -0.222 5.222 6 C -0.012 4.012 7 C -0.202 4.202 8 C 0.331 3.669 9 O -0.461 6.461 10 N -0.356 5.356 11 C 0.048 3.952 12 H 0.085 0.915 13 C -0.152 4.152 14 C -0.134 4.134 15 H 0.098 0.902 16 C -0.151 4.151 17 C 0.031 3.969 18 H 0.089 0.911 19 C -0.169 4.169 20 N -0.328 5.328 21 C -0.392 4.392 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.559 5.559 25 Si 0.746 3.254 26 H -0.199 1.199 27 H -0.176 1.176 28 H -0.240 1.240 29 C 0.020 3.980 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.194 0.806 34 H 0.205 0.795 35 H 0.156 0.844 36 H 0.285 0.715 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.332 -0.659 -6.919 8.760 hybrid contribution 0.729 0.660 0.693 1.203 sum -4.604 0.001 -6.226 7.743 Atomic orbital electron populations 1.20796 0.88417 1.03078 1.03386 1.20751 0.98190 0.91671 0.90933 1.22322 0.95239 0.99085 1.02979 1.23484 0.92689 0.96591 0.92176 1.67696 1.41653 0.98949 1.13899 1.22694 0.90726 0.96290 0.91486 1.21002 0.95390 0.95241 1.08555 1.18219 0.85925 0.84724 0.78019 1.90607 1.18210 1.86742 1.50526 1.47716 1.23796 1.06217 1.57834 1.20888 0.93181 0.82835 0.98336 0.91483 1.22005 0.96915 1.02401 0.93900 1.22723 0.97200 0.96813 0.96670 0.90210 1.22923 0.96084 0.97001 0.99129 1.21925 0.95753 0.85835 0.93426 0.91125 1.22430 0.98233 0.98106 0.98120 1.45053 1.03462 1.03775 1.80507 1.19255 0.88497 0.99127 1.32280 0.90241 1.25267 0.98802 0.98942 0.98252 1.70162 1.33222 1.14797 1.37691 0.86010 0.81261 0.81572 0.76537 1.19882 1.17610 1.23989 1.21912 0.83722 0.93877 0.98530 0.89754 0.92402 0.89127 0.80564 0.79518 0.84374 0.71515 0.93109 0.88981 0.93059 0.88277 0.87677 0.92380 0.94833 0.93903 0.96744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.04 8.70 71.24 0.62 -2.42 16 2 C -0.01 -0.24 5.95 -19.40 -0.12 -0.35 16 3 C -0.18 -5.04 9.78 22.33 0.22 -4.82 16 4 C 0.11 3.31 11.17 84.69 0.95 4.26 16 5 N -0.51 -20.10 9.58 -194.75 -1.87 -21.97 16 6 C 0.15 6.08 9.77 85.04 0.83 6.92 16 7 C -0.20 -8.03 5.87 -19.99 -0.12 -8.15 16 8 C 0.54 22.96 5.61 86.79 0.49 23.45 16 9 O -0.58 -24.83 12.76 -3.88 -0.05 -24.88 16 10 N -0.69 -28.13 2.67 -445.38 -1.19 -29.32 16 11 C 0.15 5.21 2.73 45.00 0.12 5.34 16 12 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 13 C -0.11 -3.75 5.14 30.93 0.16 -3.59 16 14 C -0.11 -4.16 4.33 -9.05 -0.04 -4.20 16 15 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 16 C -0.11 -3.56 6.18 32.18 0.20 -3.37 16 17 C 0.14 4.84 4.30 45.79 0.20 5.04 16 18 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 19 C -0.13 -3.89 5.42 30.89 0.17 -3.72 16 20 N -0.60 -27.01 1.76 -664.45 -1.17 -28.18 16 21 C -0.26 -13.08 8.39 84.03 0.71 -12.37 16 22 H 0.08 3.87 7.84 -2.91 -0.02 3.85 16 23 C -0.01 -0.76 5.20 84.86 0.44 -0.32 16 24 N -0.91 -50.73 10.60 21.65 0.23 -50.50 16 25 Si 0.92 43.19 29.02 68.60 1.99 45.18 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.25 -11.75 6.32 99.48 0.63 -11.12 16 28 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 29 C 0.14 6.67 4.23 86.85 0.37 7.03 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.08 6.51 -2.39 -0.02 2.06 16 32 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.14 6.09 7.09 -2.91 -0.02 6.06 16 36 H 0.43 18.87 2.66 -92.71 -0.25 18.62 16 37 H 0.05 1.91 6.60 -2.39 -0.02 1.89 16 38 H 0.09 2.40 7.98 -2.39 -0.02 2.38 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.38 7.75 -2.39 -0.02 2.36 16 41 H 0.10 2.37 8.00 -2.39 -0.02 2.35 16 42 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.24 13.57 8.31 -92.70 -0.77 12.80 16 44 H 0.04 2.14 3.94 -15.30 -0.06 2.08 16 45 H 0.01 0.80 6.51 -2.39 -0.02 0.79 16 Total: -1.00 -64.08 335.88 3.77 -60.31 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: 0.64 Total: 40.63 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.19 Total: 8.74 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -4.00 Total: -129.97 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.99 Total: 45.18 kcal Total: -64.08 3.77 -60.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047046067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.241 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds