Wall clock time and date at job start Tue Mar 31 2020 11:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 120.34610 * 2 1 4 4 N 1.31930 * 121.07518 * 179.72404 * 3 2 1 5 5 C 1.31691 * 121.88046 * 0.53954 * 4 3 2 6 6 C 1.39523 * 120.56853 * 359.74879 * 5 4 3 7 7 C 1.47836 * 120.56214 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99924 * 185.20736 * 7 6 5 9 9 N 1.34779 * 119.99890 * 5.20519 * 7 6 5 10 10 C 1.46504 * 119.99689 * 182.76386 * 9 7 6 11 11 H 1.08993 * 109.32215 * 51.51868 * 10 9 7 12 12 C 1.53026 * 109.32805 * 291.86964 * 10 9 7 13 13 C 1.53966 * 108.82773 * 295.14999 * 12 10 9 14 14 H 1.09003 * 112.99901 * 168.08717 * 13 12 10 15 15 C 1.55428 * 106.41392 * 293.81382 * 13 12 10 16 16 C 1.55168 * 100.35041 * 73.38040 * 15 13 12 17 17 H 1.09002 * 112.48525 * 162.67189 * 16 15 13 18 18 C 1.52985 * 109.32172 * 170.98300 * 10 9 7 19 19 N 1.47792 * 104.25849 * 40.55531 * 16 15 13 20 20 C 1.36936 * 125.86093 * 153.55280 * 19 16 15 21 21 H 1.08002 * 119.99641 * 6.25422 * 20 19 16 22 22 C 1.38812 * 119.99701 * 186.25307 * 20 19 16 23 23 N 1.31614 * 120.00365 * 6.78003 * 22 20 19 24 24 Si 1.86798 * 119.99715 * 186.77612 * 22 20 19 25 25 H 1.48499 * 109.47219 * 60.00352 * 24 22 20 26 26 H 1.48504 * 109.47307 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47321 * 300.00479 * 24 22 20 28 28 C 1.47085 * 108.27965 * 333.52889 * 19 16 15 29 29 C 1.38357 * 120.34817 * 180.27269 * 2 1 3 30 30 H 1.09002 * 109.47178 * 269.72857 * 1 2 3 31 31 H 1.08998 * 109.47349 * 149.72659 * 1 2 3 32 32 H 1.09001 * 109.47317 * 29.72347 * 1 2 3 33 33 H 1.08000 * 119.46520 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.71995 * 179.72927 * 5 4 3 35 35 H 0.96998 * 119.99981 * 2.77224 * 9 7 6 36 36 H 1.09002 * 109.57854 * 54.94817 * 12 10 9 37 37 H 1.08999 * 109.58168 * 175.20935 * 12 10 9 38 38 H 1.08999 * 111.24044 * 191.15275 * 15 13 12 39 39 H 1.09002 * 111.23458 * 315.60581 * 15 13 12 40 40 H 1.08999 * 109.53385 * 185.06628 * 18 10 9 41 41 H 1.09000 * 109.53684 * 305.29589 * 18 10 9 42 42 H 0.96994 * 120.00151 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.97948 * 241.74625 * 28 19 16 44 44 H 1.09004 * 110.00355 * 120.48669 * 28 19 16 45 45 H 1.07999 * 120.85105 * 0.02837 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2107 0.0054 5 6 4.2349 0.1015 0.0006 6 6 3.6054 -1.1437 -0.0054 7 6 4.4023 -2.3889 -0.0103 8 8 3.8469 -3.4654 -0.1110 9 7 5.7445 -2.3304 0.0968 10 6 6.5388 -3.5596 0.0311 11 1 6.2589 -4.1227 -0.8591 12 6 6.2630 -4.4079 1.2745 13 6 6.7663 -3.6485 2.5157 14 1 6.4237 -4.0887 3.4522 15 6 8.3132 -3.5702 2.3854 16 6 8.4449 -2.5091 1.2610 17 1 9.4444 -2.0771 1.2105 18 6 8.0235 -3.1993 -0.0482 19 7 7.4114 -1.5039 1.5863 20 6 7.4421 -0.1800 1.2377 21 1 8.2230 0.1897 0.5897 22 6 6.4695 0.6866 1.7171 23 7 5.5978 0.2685 2.6102 24 14 6.3979 2.4464 1.0947 25 1 6.1829 2.4435 -0.3746 26 1 5.2776 3.1608 1.7579 27 1 7.6766 3.1342 1.4065 28 6 6.3439 -2.1697 2.3482 29 6 2.2061 -1.1940 -0.0057 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 -0.8875 -0.5181 32 1 -0.3634 0.8924 -0.5095 33 1 1.6629 2.1275 -0.0004 34 1 5.3135 0.1559 0.0009 35 1 6.1846 -1.4744 0.2176 36 1 5.1915 -4.5859 1.3650 37 1 6.7856 -5.3607 1.1900 38 1 8.7704 -3.2226 3.3118 39 1 8.7322 -4.5277 2.0758 40 1 8.6117 -4.1063 -0.1877 41 1 8.1902 -2.5230 -0.8867 42 1 4.9185 0.8742 2.9454 43 1 5.4033 -2.1110 1.8006 44 1 6.2352 -1.7004 3.3260 45 1 1.6858 -2.1403 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047046316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:25 Heat of formation + Delta-G solvation = 79.109958 kcal Electronic energy + Delta-G solvation = -28962.628019 eV Core-core repulsion = 25368.742994 eV Total energy + Delta-G solvation = -3593.885025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91771 -39.60644 -37.65405 -33.95227 -33.54613 -32.91805 -31.55774 -30.77811 -30.25171 -27.95173 -26.87244 -25.33107 -24.01303 -23.24463 -22.20289 -21.46799 -19.80285 -19.43115 -18.75885 -17.50176 -16.68103 -16.36658 -15.90081 -15.35444 -14.85395 -14.55446 -14.32960 -13.82098 -13.64450 -13.55990 -12.89393 -12.72513 -12.61082 -12.53563 -12.39468 -12.28834 -12.18254 -11.89859 -11.72098 -11.69561 -11.57279 -11.43916 -10.86251 -10.72505 -10.44330 -10.13154 -9.86784 -9.76336 -9.64302 -9.52716 -9.30990 -9.23816 -8.95738 -8.64235 -8.42923 -7.50263 -6.95888 -5.90537 -3.33460 1.24597 1.71226 3.39777 3.46357 3.53913 3.57133 4.01330 4.34274 4.45956 4.89354 5.06311 5.13785 5.19285 5.23149 5.28682 5.36182 5.44212 5.51420 5.59718 5.67837 5.70468 5.80341 5.89446 5.91438 5.94101 6.01178 6.09169 6.15760 6.21775 6.27163 6.28049 6.43579 6.53127 6.60154 6.66442 6.72895 6.82060 6.88675 6.93138 7.13279 7.40662 7.46495 7.58943 7.76042 8.07267 8.43035 8.57949 8.98453 9.14499 9.56192 10.26670 11.10858 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.007512 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.654215 B = 3726.237764 C = 5141.534468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.167 4.167 3 C 0.114 3.886 4 N -0.490 5.490 5 C 0.156 3.844 6 C -0.175 4.175 7 C 0.552 3.448 8 O -0.571 6.571 9 N -0.687 5.687 10 C 0.162 3.838 11 H 0.061 0.939 12 C -0.125 4.125 13 C -0.119 4.119 14 H 0.075 0.925 15 C -0.126 4.126 16 C 0.150 3.850 17 H 0.068 0.932 18 C -0.141 4.141 19 N -0.595 5.595 20 C -0.269 4.269 21 H 0.084 0.916 22 C 0.002 3.998 23 N -0.891 5.891 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.294 1.294 28 C 0.144 3.856 29 C -0.024 4.024 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.181 0.819 35 H 0.436 0.564 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.259 0.741 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -4.006 -4.305 6.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.169 4.169 3 C -0.043 4.043 4 N -0.198 5.198 5 C -0.001 4.001 6 C -0.180 4.180 7 C 0.339 3.661 8 O -0.453 6.453 9 N -0.352 5.352 10 C 0.056 3.944 11 H 0.079 0.921 12 C -0.163 4.163 13 C -0.138 4.138 14 H 0.093 0.907 15 C -0.165 4.165 16 C 0.042 3.958 17 H 0.086 0.914 18 C -0.181 4.181 19 N -0.322 5.322 20 C -0.397 4.397 21 H 0.101 0.899 22 C -0.198 4.198 23 N -0.534 5.534 24 Si 0.738 3.262 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.222 1.222 28 C 0.019 3.981 29 C -0.050 4.050 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.197 0.803 35 H 0.292 0.708 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.952 -3.668 -4.307 6.381 hybrid contribution -0.252 0.523 0.114 0.591 sum -3.204 -3.145 -4.193 6.143 Atomic orbital electron populations 1.20628 0.90441 1.02557 1.02264 1.20730 0.97261 0.94005 1.04897 1.22769 0.90423 0.97076 0.94061 1.67654 1.07506 1.31576 1.13017 1.23794 1.01961 0.86374 0.87947 1.21013 0.94672 0.95487 1.06858 1.18031 0.83224 0.87883 0.77007 1.90639 1.72120 1.29832 1.52749 1.47545 1.05434 1.13581 1.68664 1.20628 0.90722 0.85854 0.97176 0.92104 1.22083 1.01970 0.97227 0.95027 1.22802 0.95224 0.99166 0.96639 0.90680 1.22962 0.96253 0.98145 0.99116 1.21622 0.93122 0.89317 0.91733 0.91403 1.22527 0.94525 1.00342 1.00742 1.44985 1.19191 1.04690 1.63330 1.19142 1.11388 0.83222 1.25919 0.89866 1.24949 0.98516 0.98147 0.98212 1.70017 1.18770 1.35007 1.29600 0.86341 0.76401 0.83974 0.79467 1.19847 1.20824 1.22183 1.22102 0.92701 0.85938 0.97323 1.21477 0.92741 0.98282 0.92549 0.91277 0.91625 0.91571 0.83369 0.80279 0.70793 0.90928 0.92427 0.92104 0.92164 0.91615 0.91938 0.93085 0.91511 0.92975 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.03 36.01 0.36 -0.79 16 2 C -0.17 -2.64 5.89 -104.54 -0.62 -3.25 16 3 C 0.11 1.95 10.85 -17.47 -0.19 1.77 16 4 N -0.49 -10.22 8.99 -12.91 -0.12 -10.33 16 5 C 0.16 3.41 8.10 -17.13 -0.14 3.28 16 6 C -0.18 -3.68 5.87 -104.82 -0.62 -4.29 16 7 C 0.55 12.03 5.95 -12.33 -0.07 11.96 16 8 O -0.57 -13.02 14.98 5.32 0.08 -12.94 16 9 N -0.69 -14.35 2.73 -54.75 -0.15 -14.50 16 10 C 0.16 2.97 2.74 -67.92 -0.19 2.78 16 11 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 12 C -0.12 -2.23 5.13 -26.21 -0.13 -2.37 16 13 C -0.12 -2.24 4.33 -87.93 -0.38 -2.62 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -2.14 6.18 -24.29 -0.15 -2.29 16 16 C 0.15 2.77 4.30 -65.61 -0.28 2.48 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -2.33 5.42 -26.28 -0.14 -2.47 16 19 N -0.60 -13.23 1.76 -161.37 -0.28 -13.52 16 20 C -0.27 -6.51 8.14 -15.06 -0.12 -6.63 16 21 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 22 C 0.00 0.04 3.07 -17.43 -0.05 -0.02 16 23 N -0.89 -23.33 9.63 55.49 0.53 -22.79 16 24 Si 0.91 21.34 26.31 -169.99 -4.47 16.87 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.14 3.26 3.96 -2.83 -0.01 3.25 16 29 C -0.02 -0.43 9.39 -38.87 -0.37 -0.80 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.18 4.21 2.86 -52.49 -0.15 4.06 16 35 H 0.44 9.61 2.37 -40.82 -0.10 9.51 16 36 H 0.07 1.45 6.59 -51.93 -0.34 1.10 16 37 H 0.06 0.89 7.98 -51.93 -0.41 0.47 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 40 H 0.07 0.91 8.00 -51.93 -0.42 0.49 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.07 1.63 3.74 -58.46 -0.22 1.41 16 44 H 0.05 1.37 6.89 -51.93 -0.36 1.01 16 45 H 0.14 2.33 7.75 -52.49 -0.41 1.93 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -27.93 328.22 -8.71 -36.64 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.15 Total: 15.64 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.10 Total: -0.01 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.02 Total: -61.15 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.47 Total: 16.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.93 -8.71 -36.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047046316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.750 kcal (2) G-P(sol) polarization free energy of solvation -27.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds