Wall clock time and date at job start Tue Mar 31 2020 11:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38351 * 120.34610 * 2 1 4 4 N 1.31930 * 121.07518 * 179.72404 * 3 2 1 5 5 C 1.31691 * 121.88046 * 0.53954 * 4 3 2 6 6 C 1.39523 * 120.56853 * 359.74879 * 5 4 3 7 7 C 1.47836 * 120.56214 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99924 * 185.20736 * 7 6 5 9 9 N 1.34779 * 119.99890 * 5.20519 * 7 6 5 10 10 C 1.46504 * 119.99689 * 182.76386 * 9 7 6 11 11 H 1.08993 * 109.32215 * 51.51868 * 10 9 7 12 12 C 1.53026 * 109.32805 * 291.86964 * 10 9 7 13 13 C 1.53966 * 108.82773 * 295.14999 * 12 10 9 14 14 H 1.09003 * 112.99901 * 168.08717 * 13 12 10 15 15 C 1.55428 * 106.41392 * 293.81382 * 13 12 10 16 16 C 1.55168 * 100.35041 * 73.38040 * 15 13 12 17 17 H 1.09002 * 112.48525 * 162.67189 * 16 15 13 18 18 C 1.52985 * 109.32172 * 170.98300 * 10 9 7 19 19 N 1.47792 * 104.25849 * 40.55531 * 16 15 13 20 20 C 1.36936 * 125.86093 * 153.55280 * 19 16 15 21 21 H 1.08002 * 119.99641 * 6.25422 * 20 19 16 22 22 C 1.38812 * 119.99701 * 186.25307 * 20 19 16 23 23 N 1.31614 * 120.00365 * 6.78003 * 22 20 19 24 24 Si 1.86798 * 119.99715 * 186.77612 * 22 20 19 25 25 H 1.48499 * 109.47219 * 60.00352 * 24 22 20 26 26 H 1.48504 * 109.47307 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47321 * 300.00479 * 24 22 20 28 28 C 1.47085 * 108.27965 * 333.52889 * 19 16 15 29 29 C 1.38357 * 120.34817 * 180.27269 * 2 1 3 30 30 H 1.09002 * 109.47178 * 269.72857 * 1 2 3 31 31 H 1.08998 * 109.47349 * 149.72659 * 1 2 3 32 32 H 1.09001 * 109.47317 * 29.72347 * 1 2 3 33 33 H 1.08000 * 119.46520 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.71995 * 179.72927 * 5 4 3 35 35 H 0.96998 * 119.99981 * 2.77224 * 9 7 6 36 36 H 1.09002 * 109.57854 * 54.94817 * 12 10 9 37 37 H 1.08999 * 109.58168 * 175.20935 * 12 10 9 38 38 H 1.08999 * 111.24044 * 191.15275 * 15 13 12 39 39 H 1.09002 * 111.23458 * 315.60581 * 15 13 12 40 40 H 1.08999 * 109.53385 * 185.06628 * 18 10 9 41 41 H 1.09000 * 109.53684 * 305.29589 * 18 10 9 42 42 H 0.96994 * 120.00151 * 179.97438 * 23 22 20 43 43 H 1.08996 * 109.97948 * 241.74625 * 28 19 16 44 44 H 1.09004 * 110.00355 * 120.48669 * 28 19 16 45 45 H 1.07999 * 120.85105 * 0.02837 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2107 0.0054 5 6 4.2349 0.1015 0.0006 6 6 3.6054 -1.1437 -0.0054 7 6 4.4023 -2.3889 -0.0103 8 8 3.8469 -3.4654 -0.1110 9 7 5.7445 -2.3304 0.0968 10 6 6.5388 -3.5596 0.0311 11 1 6.2589 -4.1227 -0.8591 12 6 6.2630 -4.4079 1.2745 13 6 6.7663 -3.6485 2.5157 14 1 6.4237 -4.0887 3.4522 15 6 8.3132 -3.5702 2.3854 16 6 8.4449 -2.5091 1.2610 17 1 9.4444 -2.0771 1.2105 18 6 8.0235 -3.1993 -0.0482 19 7 7.4114 -1.5039 1.5863 20 6 7.4421 -0.1800 1.2377 21 1 8.2230 0.1897 0.5897 22 6 6.4695 0.6866 1.7171 23 7 5.5978 0.2685 2.6102 24 14 6.3979 2.4464 1.0947 25 1 6.1829 2.4435 -0.3746 26 1 5.2776 3.1608 1.7579 27 1 7.6766 3.1342 1.4065 28 6 6.3439 -2.1697 2.3482 29 6 2.2061 -1.1940 -0.0057 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 -0.8875 -0.5181 32 1 -0.3634 0.8924 -0.5095 33 1 1.6629 2.1275 -0.0004 34 1 5.3135 0.1559 0.0009 35 1 6.1846 -1.4744 0.2176 36 1 5.1915 -4.5859 1.3650 37 1 6.7856 -5.3607 1.1900 38 1 8.7704 -3.2226 3.3118 39 1 8.7322 -4.5277 2.0758 40 1 8.6117 -4.1063 -0.1877 41 1 8.1902 -2.5230 -0.8867 42 1 4.9185 0.8742 2.9454 43 1 5.4033 -2.1110 1.8006 44 1 6.2352 -1.7004 3.3260 45 1 1.6858 -2.1403 -0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047046316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:24 Heat of formation + Delta-G solvation = 63.404621 kcal Electronic energy + Delta-G solvation = -28963.309054 eV Core-core repulsion = 25368.742994 eV Total energy + Delta-G solvation = -3594.566060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47215 -41.06059 -39.26459 -35.65687 -35.07661 -34.33821 -33.06962 -32.39511 -31.82435 -29.47203 -28.09722 -27.06334 -25.47285 -24.88785 -23.64488 -22.90027 -21.43227 -20.97973 -20.28986 -19.15228 -18.34237 -17.85797 -17.35627 -16.91919 -16.55857 -16.20845 -15.93847 -15.29527 -15.19836 -14.99011 -14.31568 -14.22756 -14.16589 -13.93955 -13.81994 -13.55873 -13.46851 -13.33680 -13.31535 -13.13944 -13.04763 -12.78755 -12.60023 -12.37215 -12.19672 -11.95056 -11.64052 -11.36064 -11.12009 -11.08422 -10.80123 -10.73910 -10.71404 -10.24441 -9.84805 -9.12309 -8.77759 -7.83038 -5.23477 -0.23341 0.27995 1.47328 1.54893 1.62904 1.96353 2.45561 2.52017 2.94889 3.25991 3.50561 3.65194 3.82550 3.83337 3.94516 3.98436 4.01529 4.04787 4.10187 4.31065 4.36999 4.45597 4.46874 4.64913 4.68528 4.79367 4.81746 4.84468 4.87651 4.92893 5.07593 5.11279 5.15172 5.21937 5.26054 5.29252 5.36125 5.41961 5.52079 5.58607 5.72103 5.79270 5.85871 5.90587 6.19570 6.88893 6.97999 7.09854 7.47790 7.74818 8.42565 9.16198 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.007512 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.654215 B = 3726.237764 C = 5141.534468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.148 4.148 3 C 0.107 3.893 4 N -0.517 5.517 5 C 0.140 3.860 6 C -0.198 4.198 7 C 0.546 3.454 8 O -0.590 6.590 9 N -0.689 5.689 10 C 0.149 3.851 11 H 0.067 0.933 12 C -0.115 4.115 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.112 4.112 16 C 0.139 3.861 17 H 0.076 0.924 18 C -0.130 4.130 19 N -0.605 5.605 20 C -0.264 4.264 21 H 0.088 0.912 22 C -0.024 4.024 23 N -0.908 5.908 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.301 1.301 27 H -0.296 1.296 28 C 0.150 3.850 29 C -0.035 4.035 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.159 0.841 35 H 0.431 0.569 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.243 0.757 43 H 0.049 0.951 44 H 0.005 0.995 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -5.278 -5.215 7.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C -0.050 4.050 4 N -0.226 5.226 5 C -0.017 4.017 6 C -0.203 4.203 7 C 0.332 3.668 8 O -0.475 6.475 9 N -0.353 5.353 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.153 4.153 13 C -0.137 4.137 14 H 0.099 0.901 15 C -0.150 4.150 16 C 0.033 3.967 17 H 0.094 0.906 18 C -0.169 4.169 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.105 0.895 22 C -0.221 4.221 23 N -0.553 5.553 24 Si 0.776 3.224 25 H -0.196 1.196 26 H -0.228 1.228 27 H -0.224 1.224 28 C 0.025 3.975 29 C -0.061 4.061 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.202 0.798 34 H 0.175 0.825 35 H 0.285 0.715 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.023 0.977 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.913 -4.966 -5.239 7.785 hybrid contribution -0.304 0.945 0.381 1.064 sum -3.218 -4.021 -4.858 7.079 Atomic orbital electron populations 1.20750 0.86591 1.04606 1.03607 1.21201 0.99755 0.92453 1.01608 1.23435 0.89420 0.99215 0.92905 1.67581 1.09497 1.31502 1.13995 1.23403 1.01212 0.87119 0.89942 1.21117 0.96009 0.94908 1.08255 1.18251 0.83682 0.88013 0.76812 1.90599 1.72454 1.30362 1.54053 1.47661 1.05422 1.14271 1.67930 1.20942 0.91701 0.85165 0.97688 0.91524 1.22005 1.00790 0.98520 0.93997 1.22761 0.96989 0.96358 0.97561 0.90145 1.22925 0.94403 0.99405 0.98296 1.21929 0.92450 0.88954 0.93403 0.90586 1.22449 0.93434 1.01877 0.99174 1.45087 1.20295 1.04671 1.63109 1.19338 1.10678 0.84264 1.24893 0.89463 1.25205 0.98762 0.99520 0.98641 1.70187 1.19279 1.34692 1.31130 0.85771 0.75280 0.82365 0.79030 1.19621 1.22775 1.22369 1.21877 0.92718 0.88374 0.94541 1.21738 0.91872 0.99789 0.92728 0.90029 0.90270 0.88929 0.79757 0.82465 0.71469 0.93497 0.88714 0.92741 0.88140 0.87433 0.92233 0.94680 0.93345 0.97661 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.03 71.24 0.71 -1.18 16 2 C -0.15 -4.46 5.89 -19.81 -0.12 -4.58 16 3 C 0.11 3.56 10.85 84.70 0.92 4.48 16 4 N -0.52 -21.89 8.99 -194.75 -1.75 -23.64 16 5 C 0.14 6.32 8.10 85.02 0.69 7.01 16 6 C -0.20 -8.55 5.87 -19.99 -0.12 -8.67 16 7 C 0.55 24.40 5.95 86.78 0.52 24.91 16 8 O -0.59 -27.39 14.98 -3.88 -0.06 -27.44 16 9 N -0.69 -29.15 2.73 -445.40 -1.22 -30.37 16 10 C 0.15 5.26 2.74 44.99 0.12 5.38 16 11 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 12 C -0.11 -3.88 5.13 30.93 0.16 -3.72 16 13 C -0.12 -4.28 4.33 -9.05 -0.04 -4.31 16 14 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 15 C -0.11 -3.46 6.18 32.17 0.20 -3.26 16 16 C 0.14 4.81 4.30 45.79 0.20 5.01 16 17 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 18 C -0.13 -3.89 5.42 30.89 0.17 -3.72 16 19 N -0.61 -26.95 1.76 -664.44 -1.17 -28.13 16 20 C -0.26 -12.94 8.14 84.03 0.68 -12.25 16 21 H 0.09 4.13 7.84 -2.91 -0.02 4.11 16 22 C -0.02 -1.23 3.07 84.86 0.26 -0.97 16 23 N -0.91 -49.78 9.63 21.65 0.21 -49.58 16 24 Si 0.95 45.19 26.31 68.60 1.80 47.00 16 25 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 28 C 0.15 6.96 3.96 86.85 0.34 7.30 16 29 C -0.03 -1.26 9.39 22.73 0.21 -1.05 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 32 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.19 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.16 7.73 2.86 -2.91 -0.01 7.72 16 35 H 0.43 19.38 2.37 -92.71 -0.22 19.16 16 36 H 0.05 1.84 6.59 -2.39 -0.02 1.82 16 37 H 0.09 2.50 7.98 -2.39 -0.02 2.48 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.34 7.75 -2.39 -0.02 2.32 16 40 H 0.11 2.38 8.00 -2.39 -0.02 2.36 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 43 H 0.05 2.45 3.74 -15.27 -0.06 2.40 16 44 H 0.01 0.29 6.89 -2.38 -0.02 0.27 16 45 H 0.15 4.94 7.75 -2.91 -0.02 4.92 16 Total: -1.00 -64.58 328.22 3.48 -61.10 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.75 Total: 40.65 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.91 Total: 10.40 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -3.93 Total: -131.71 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.44 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.80 Total: 47.00 kcal Total: -64.58 3.48 -61.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047046316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.509 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds