Wall clock time and date at job start Tue Mar 31 2020 11:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38178 * 119.54571 * 2 1 4 4 C 1.39794 * 118.99526 * 180.22837 * 3 2 1 5 5 C 1.48150 * 120.92297 * 179.77925 * 4 3 2 6 6 O 1.21516 * 120.00039 * 359.71691 * 5 4 3 7 7 N 1.34781 * 119.99972 * 179.71971 * 5 4 3 8 8 C 1.46502 * 119.99567 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.32490 * 34.99814 * 8 7 5 10 10 C 1.53033 * 109.32200 * 154.64037 * 8 7 5 11 11 C 1.53592 * 109.02548 * 175.65234 * 10 8 7 12 12 H 1.09002 * 113.05628 * 168.02069 * 11 10 8 13 13 C 1.55425 * 106.33533 * 293.73256 * 11 10 8 14 14 C 1.55173 * 100.35434 * 73.35749 * 13 11 10 15 15 H 1.08994 * 113.04889 * 162.99133 * 14 13 11 16 16 C 1.52990 * 109.32473 * 275.35188 * 8 7 5 17 17 N 1.47787 * 104.25409 * 40.55057 * 14 13 11 18 18 C 1.36937 * 125.85749 * 153.54046 * 17 14 13 19 19 H 1.07994 * 119.99910 * 359.97438 * 18 17 14 20 20 C 1.38811 * 120.00069 * 180.02562 * 18 17 14 21 21 N 1.31615 * 120.00166 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47162 * 59.99676 * 22 20 18 24 24 H 1.48493 * 109.47293 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47211 * 299.99860 * 22 20 18 26 26 C 1.47089 * 108.28914 * 333.54141 * 17 14 13 27 27 C 1.39838 * 118.15819 * 359.50412 * 4 3 2 28 28 C 1.38135 * 118.99961 * 0.25074 * 27 4 3 29 29 N 1.31793 * 119.55713 * 179.72119 * 2 1 3 30 30 H 1.09000 * 109.47267 * 270.27522 * 1 2 3 31 31 H 1.09000 * 109.47790 * 30.27953 * 1 2 3 32 32 H 1.09004 * 109.46745 * 150.27841 * 1 2 3 33 33 H 1.07996 * 120.50511 * 0.02562 * 3 2 1 34 34 H 0.97002 * 120.00001 * 359.97438 * 7 5 4 35 35 H 1.08990 * 109.57981 * 295.30220 * 10 8 7 36 36 H 1.09003 * 109.57526 * 55.69743 * 10 8 7 37 37 H 1.09008 * 111.23292 * 315.58461 * 13 11 10 38 38 H 1.08997 * 111.23566 * 191.13487 * 13 11 10 39 39 H 1.09001 * 109.53522 * 304.71110 * 16 8 7 40 40 H 1.09000 * 109.52793 * 64.93760 * 16 8 7 41 41 H 0.96996 * 120.00287 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.97421 * 120.45550 * 26 17 14 43 43 H 1.09002 * 109.97567 * 241.74214 * 26 17 14 44 44 H 1.08000 * 120.50438 * 180.27336 * 27 4 3 45 45 H 1.07997 * 119.54661 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2021 0.0000 4 6 3.5862 1.1887 -0.0049 5 6 4.3597 2.4522 -0.0100 6 8 3.7794 3.5198 -0.0151 7 7 5.7071 2.4176 -0.0089 8 6 6.4719 3.6671 -0.0145 9 1 5.9411 4.4175 0.5714 10 6 7.8488 3.4208 0.6061 11 6 8.6838 4.7054 0.4981 12 1 9.5935 4.6749 1.0977 13 6 8.9362 4.9366 -1.0180 14 6 7.5271 5.4068 -1.4668 15 1 7.5324 5.9062 -2.4356 16 6 6.6223 4.1622 -1.4543 17 7 7.0756 6.2957 -0.3759 18 6 6.1797 7.3241 -0.4980 19 1 5.7370 7.5434 -1.4583 20 6 5.8413 8.0854 0.6123 21 7 6.3811 7.8184 1.7826 22 14 4.6197 9.4887 0.4456 23 1 3.3189 8.9580 -0.0357 24 1 4.4300 10.1395 1.7667 25 1 5.1386 10.4837 -0.5270 26 6 7.7536 5.8864 0.8636 27 6 4.2343 -0.0505 0.0011 28 6 3.4741 -1.2038 0.0062 29 7 2.1571 -1.1464 0.0056 30 1 -0.3634 0.0049 1.0276 31 1 -0.3635 0.8874 -0.5181 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6492 2.1378 0.0004 34 1 6.1703 1.5653 -0.0044 35 1 7.7335 3.1522 1.6561 36 1 8.3503 2.6128 0.0734 37 1 9.2205 4.0099 -1.5167 38 1 9.6822 5.7146 -1.1799 39 1 7.0718 3.3785 -2.0641 40 1 5.6420 4.4202 -1.8551 41 1 6.1444 8.3501 2.5586 42 1 8.3415 6.7154 1.2576 43 1 7.0184 5.5666 1.6021 44 1 5.3129 -0.1050 0.0021 45 1 3.9654 -2.1655 0.0113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047166145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:47 Heat of formation + Delta-G solvation = 30.112504 kcal Electronic energy + Delta-G solvation = -26756.439151 eV Core-core repulsion = 23160.429437 eV Total energy + Delta-G solvation = -3596.009714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.76249 -39.85177 -38.45110 -34.69670 -33.42486 -32.72503 -32.48473 -30.70772 -29.61630 -28.31387 -27.83035 -25.31424 -24.63321 -23.13610 -22.95525 -21.57529 -20.14766 -19.44632 -18.80720 -17.68054 -17.04825 -16.63943 -15.79296 -15.63700 -15.25349 -15.00876 -14.54693 -14.39861 -14.18437 -13.87886 -13.62649 -13.40782 -12.89853 -12.76746 -12.63803 -12.46082 -12.04212 -11.90582 -11.84356 -11.75618 -11.57728 -11.23061 -10.71974 -10.66578 -10.57654 -10.14864 -9.98978 -9.97814 -9.81993 -9.75593 -9.66349 -9.45596 -9.32567 -9.18085 -8.65978 -8.52632 -6.77477 -5.63248 -2.95672 0.62017 0.88005 2.98715 3.23598 3.47922 3.52215 3.53706 3.73456 4.04484 4.48303 4.55472 4.58622 4.78481 4.85662 5.14856 5.21613 5.22369 5.28777 5.38231 5.41208 5.53589 5.56400 5.62934 5.71921 5.81456 5.86316 5.87249 5.92311 6.02488 6.05796 6.06711 6.11411 6.21233 6.41888 6.55300 6.59968 6.64557 6.82452 6.86970 6.96766 7.03440 7.60866 7.63459 7.69806 7.72591 7.88309 8.31768 8.40815 9.29528 9.89903 10.55527 11.48700 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.003969 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.339867 B = 7053.785801 C = 8472.632220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.117 4.117 4 C -0.074 4.074 5 C 0.546 3.454 6 O -0.509 6.509 7 N -0.718 5.718 8 C 0.146 3.854 9 H 0.117 0.883 10 C -0.112 4.112 11 C -0.119 4.119 12 H 0.083 0.917 13 C -0.127 4.127 14 C 0.157 3.843 15 H 0.066 0.934 16 C -0.136 4.136 17 N -0.595 5.595 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.180 3.820 27 C -0.152 4.152 28 C 0.099 3.901 29 N -0.476 5.476 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.390 0.610 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.251 0.749 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.138 0.862 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -18.352 -3.380 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.137 4.137 4 C -0.086 4.086 5 C 0.331 3.669 6 O -0.384 6.384 7 N -0.369 5.369 8 C 0.043 3.957 9 H 0.135 0.865 10 C -0.150 4.150 11 C -0.139 4.139 12 H 0.101 0.899 13 C -0.166 4.166 14 C 0.049 3.951 15 H 0.084 0.916 16 C -0.178 4.178 17 N -0.320 5.320 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.571 5.571 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.055 3.945 27 C -0.173 4.173 28 C -0.058 4.058 29 N -0.186 5.186 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.156 0.844 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.194 -18.112 -3.207 18.524 hybrid contribution 0.147 0.990 -0.002 1.001 sum -2.047 -17.121 -3.208 17.539 Atomic orbital electron populations 1.20736 0.88320 1.03713 1.03361 1.21309 0.97313 0.87806 0.95045 1.22184 0.93482 1.00183 0.97885 1.20592 0.94617 0.93939 0.99415 1.18166 0.82698 0.88222 0.77826 1.90892 1.69550 1.30333 1.47616 1.46141 1.05678 1.10356 1.74681 1.21272 0.91549 0.84659 0.98171 0.86505 1.21899 0.94919 0.98096 1.00059 1.22772 0.98420 0.96162 0.96501 0.89886 1.22975 0.97970 0.99779 0.95856 1.21510 0.90893 0.89606 0.93114 0.91623 1.22631 1.01369 0.98540 0.95228 1.44611 1.49423 1.34597 1.03328 1.18968 1.15954 1.05211 0.94929 0.90653 1.24722 1.00186 0.99681 0.95559 1.69922 1.46421 1.41755 0.99042 0.86241 0.81277 0.82029 0.76513 1.21157 1.21704 1.21314 1.21318 0.92611 0.91834 0.88727 1.22322 1.01462 0.92680 1.00832 1.22681 0.89219 0.98303 0.95612 1.67376 1.10282 1.29516 1.11463 0.90168 0.90340 0.90336 0.83387 0.77583 0.92128 0.92746 0.92222 0.91816 0.93771 0.92239 0.93861 0.93714 0.93600 0.84425 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.01 0.37 -0.52 16 2 C 0.12 1.42 6.78 -82.63 -0.56 0.86 16 3 C -0.12 -1.53 9.31 -39.02 -0.36 -1.89 16 4 C -0.07 -1.01 5.91 -104.65 -0.62 -1.63 16 5 C 0.55 9.27 7.76 -12.19 -0.09 9.17 16 6 O -0.51 -11.26 16.10 5.35 0.09 -11.17 16 7 N -0.72 -10.69 5.03 -54.64 -0.27 -10.96 16 8 C 0.15 2.64 2.08 -67.92 -0.14 2.50 16 9 H 0.12 2.80 5.39 -51.93 -0.28 2.52 16 10 C -0.11 -1.72 4.92 -26.41 -0.13 -1.85 16 11 C -0.12 -2.08 4.33 -88.12 -0.38 -2.47 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -2.13 6.18 -24.29 -0.15 -2.28 16 14 C 0.16 3.16 4.30 -65.61 -0.28 2.88 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.14 -2.52 5.27 -26.28 -0.14 -2.66 16 17 N -0.60 -14.85 2.43 -161.37 -0.39 -15.24 16 18 C -0.22 -6.27 10.29 -15.06 -0.16 -6.43 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -27.45 10.35 55.49 0.57 -26.88 16 22 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 23 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.18 4.24 4.10 -2.82 -0.01 4.23 16 27 C -0.15 -1.55 9.62 -39.02 -0.38 -1.93 16 28 C 0.10 0.96 11.17 -17.59 -0.20 0.77 16 29 N -0.48 -5.57 10.25 -9.52 -0.10 -5.67 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.15 1.98 7.74 -52.49 -0.41 1.57 16 34 H 0.39 4.26 6.74 -40.82 -0.28 3.98 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 37 H 0.06 0.84 7.74 -51.92 -0.40 0.44 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.04 1.19 7.40 -51.93 -0.38 0.80 16 43 H 0.05 1.21 6.16 -51.93 -0.32 0.90 16 44 H 0.14 0.99 6.54 -52.49 -0.34 0.65 16 45 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -33.98 355.63 -9.68 -43.66 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.59 Total: 4.43 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.33 Total: -1.49 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.19 Total: -58.75 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.98 -9.68 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047166145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.777 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds