Wall clock time and date at job start Tue Mar 31 2020 10:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38149 * 119.55164 * 2 1 4 4 C 1.39815 * 118.99929 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92148 * 179.97438 * 4 3 2 6 6 O 1.21517 * 120.00086 * 336.03543 * 5 4 3 7 7 N 1.34775 * 120.00040 * 156.03374 * 5 4 3 8 8 C 1.46658 * 125.32952 * 174.18854 * 7 5 4 9 9 C 1.53682 * 107.96563 * 179.31428 * 8 7 5 10 10 H 1.09002 * 112.76988 * 106.02032 * 9 8 7 11 11 C 1.53978 * 109.29734 * 233.06092 * 9 8 7 12 12 N 1.46755 * 106.67699 * 82.34452 * 11 9 8 13 13 C 1.36938 * 125.33814 * 198.45257 * 12 11 9 14 14 H 1.07998 * 120.00051 * 180.02562 * 13 12 11 15 15 C 1.38820 * 119.99879 * 359.97438 * 13 12 11 16 16 N 1.31615 * 119.99650 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00122 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.46905 * 60.00196 * 17 15 13 19 19 H 1.48498 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47153 * 300.00415 * 17 15 13 21 21 C 1.46656 * 109.33078 * 18.44954 * 12 11 9 22 22 C 1.53677 * 107.97076 * 359.29183 * 21 12 11 23 23 H 1.09001 * 113.31724 * 106.33007 * 22 21 12 24 24 C 1.46754 * 125.33696 * 354.21985 * 7 5 4 25 25 C 1.39813 * 118.15705 * 0.24440 * 4 3 2 26 26 C 1.38157 * 119.00195 * 359.52415 * 25 4 3 27 27 C 1.50694 * 119.55242 * 180.22660 * 26 25 4 28 28 N 1.31811 * 119.54811 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47161 * 90.00681 * 1 2 3 30 30 H 1.08998 * 109.47272 * 210.00209 * 1 2 3 31 31 H 1.08997 * 109.46869 * 330.00461 * 1 2 3 32 32 H 1.08007 * 120.49787 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.76874 * 59.68918 * 8 7 5 34 34 H 1.08999 * 109.76929 * 298.94241 * 8 7 5 35 35 H 1.08994 * 110.01820 * 201.65066 * 11 9 8 36 36 H 1.09002 * 110.01965 * 323.04380 * 11 9 8 37 37 H 0.97000 * 120.00111 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.77152 * 239.66243 * 21 12 11 39 39 H 1.09002 * 109.76734 * 118.92170 * 21 12 11 40 40 H 1.09006 * 110.01323 * 317.72764 * 24 7 5 41 41 H 1.08999 * 110.01988 * 79.11701 * 24 7 5 42 42 H 1.07998 * 120.49868 * 179.72898 * 25 4 3 43 43 H 1.09002 * 109.47491 * 270.26010 * 27 26 25 44 44 H 1.09000 * 109.47377 * 30.26423 * 27 26 25 45 45 H 1.09004 * 109.46954 * 150.25976 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1883 -0.0005 5 6 4.3600 2.4518 -0.0011 6 8 3.8569 3.4720 -0.4286 7 7 5.6217 2.4698 0.4725 8 6 6.5318 3.6185 0.4177 9 6 7.8544 3.2076 1.0839 10 1 8.6556 3.0414 0.3638 11 6 8.2159 4.2341 2.1731 12 7 7.4536 3.8632 3.3711 13 6 7.2000 4.6870 4.4351 14 1 6.6276 4.3230 5.2755 15 6 7.6796 5.9898 4.4340 16 7 8.3775 6.4331 3.4100 17 14 7.3343 7.1134 5.8857 18 1 7.9107 6.5200 7.1190 19 1 7.9501 8.4423 5.6406 20 1 5.8671 7.2713 6.0514 21 6 7.0059 2.4719 3.2501 22 6 7.4940 1.9327 1.8963 23 1 8.3265 1.2347 1.9847 24 6 6.3002 1.3429 1.1231 25 6 4.2344 -0.0507 -0.0063 26 6 3.4740 -1.2042 -0.0012 27 6 4.1594 -2.5462 -0.0022 28 7 2.1571 -1.1467 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6492 2.1376 0.0004 33 1 6.0950 4.4609 0.9541 34 1 6.7128 3.8964 -0.6206 35 1 9.2846 4.1940 2.3837 36 1 7.9366 5.2365 1.8487 37 1 8.7130 7.3433 3.4093 38 1 5.9176 2.4297 3.2929 39 1 7.4301 1.8765 4.0587 40 1 5.6186 0.8448 1.8126 41 1 6.6542 0.6366 0.3722 42 1 5.3129 -0.1052 -0.0114 43 1 4.3244 -2.8693 -1.0300 44 1 5.1174 -2.4653 0.5114 45 1 3.5323 -3.2749 0.5115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048841718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:21 Heat of formation + Delta-G solvation = 16.176402 kcal Electronic energy + Delta-G solvation = -26657.273840 eV Core-core repulsion = 23060.659811 eV Total energy + Delta-G solvation = -3596.614029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.12325 -40.99648 -39.54952 -36.76547 -34.81527 -34.36539 -33.74591 -31.69835 -31.37449 -29.99018 -27.97390 -27.64139 -26.96682 -25.58633 -23.68408 -22.91156 -21.80992 -20.91535 -20.64393 -18.99696 -18.37729 -17.57408 -17.39921 -17.05636 -16.82937 -16.46216 -15.95362 -15.61237 -15.46784 -15.17425 -14.61536 -14.44564 -14.29806 -14.18281 -14.04545 -13.68751 -13.57943 -13.34710 -13.24632 -13.07693 -12.91583 -12.89342 -12.79208 -12.72609 -12.56242 -12.08631 -11.92179 -11.75485 -11.56874 -11.48022 -11.36409 -10.91984 -10.74268 -10.51895 -9.83332 -9.74799 -8.88505 -7.83259 -5.23112 -0.36021 0.00907 1.42677 1.45638 1.51776 1.58048 1.80358 2.46633 2.67907 3.14986 3.19611 3.28778 3.37541 3.57787 3.67487 3.78498 3.86675 3.94064 3.97432 4.17381 4.23606 4.38913 4.42474 4.48760 4.52998 4.56024 4.73919 4.75040 4.76003 4.81029 4.86112 4.87787 4.96705 5.01535 5.04338 5.12362 5.15382 5.21399 5.26623 5.32517 5.44809 5.58608 5.64876 5.80622 6.27055 6.32755 6.86195 6.89805 7.10342 7.79058 8.38715 9.20784 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.003450 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.855939 B = 8113.555108 C = 8546.683035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.125 3.875 3 C -0.144 4.144 4 C -0.085 4.085 5 C 0.563 3.437 6 O -0.580 6.580 7 N -0.598 5.598 8 C 0.126 3.874 9 C -0.107 4.107 10 H 0.129 0.871 11 C 0.174 3.826 12 N -0.623 5.623 13 C -0.244 4.244 14 H 0.076 0.924 15 C -0.062 4.062 16 N -0.945 5.945 17 Si 0.975 3.025 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.284 1.284 21 C 0.137 3.863 22 C -0.094 4.094 23 H 0.143 0.857 24 C 0.105 3.895 25 C -0.152 4.152 26 C 0.127 3.873 27 C -0.102 4.102 28 N -0.487 5.487 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.029 0.971 34 H 0.072 0.928 35 H -0.002 1.002 36 H 0.055 0.945 37 H 0.247 0.753 38 H 0.008 0.992 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.176 0.824 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.866 -20.349 -9.203 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.012 4.012 3 C -0.165 4.165 4 C -0.096 4.096 5 C 0.352 3.648 6 O -0.461 6.461 7 N -0.329 5.329 8 C 0.004 3.996 9 C -0.127 4.127 10 H 0.147 0.853 11 C 0.049 3.951 12 N -0.349 5.349 13 C -0.373 4.373 14 H 0.093 0.907 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.803 3.197 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.210 1.210 21 C 0.012 3.988 22 C -0.113 4.113 23 H 0.161 0.839 24 C -0.016 4.016 25 C -0.172 4.172 26 C -0.011 4.011 27 C -0.159 4.159 28 N -0.199 5.199 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.193 0.807 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.620 -20.373 -9.367 23.682 hybrid contribution 0.271 2.496 0.951 2.685 sum -7.349 -17.876 -8.416 21.081 Atomic orbital electron populations 1.20805 0.86234 1.04486 1.04286 1.21633 0.98598 0.86979 0.94010 1.22144 0.93260 1.00519 1.00591 1.20206 0.94492 0.93096 1.01807 1.18358 0.80308 0.88317 0.77783 1.90751 1.69620 1.35910 1.49842 1.48187 1.12058 1.15478 1.57163 1.21710 0.89466 0.88258 1.00184 1.23086 0.95975 0.96123 0.97471 0.85275 1.21197 0.92604 0.96683 0.84608 1.44482 1.62484 1.09155 1.18748 1.19343 1.28296 0.93129 0.96512 0.90655 1.25570 1.00472 0.98699 1.00798 1.70087 1.41634 1.16468 1.31274 0.85206 0.77479 0.77925 0.79062 1.20036 1.21773 1.20994 1.21357 0.95789 0.85368 0.96321 1.22964 0.98395 0.96861 0.93065 0.83921 1.22643 0.93818 0.88385 0.96762 1.22874 1.03632 0.90633 1.00064 1.21895 0.88897 0.97134 0.93216 1.20865 1.00655 0.89833 1.04503 1.67341 1.10616 1.29433 1.12532 0.88984 0.89568 0.89564 0.84613 0.95286 0.90944 0.98386 0.92673 0.94335 0.97409 0.95053 0.89589 0.86314 0.80713 0.88832 0.87946 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.84 16 2 C 0.12 2.81 6.78 42.54 0.29 3.10 16 3 C -0.14 -3.82 9.32 22.63 0.21 -3.61 16 4 C -0.09 -2.35 5.70 -19.88 -0.11 -2.46 16 5 C 0.56 19.47 7.67 86.88 0.67 20.14 16 6 O -0.58 -25.12 17.00 -3.77 -0.06 -25.18 16 7 N -0.60 -18.79 3.31 -820.59 -2.71 -21.51 16 8 C 0.13 4.58 6.24 86.58 0.54 5.12 16 9 C -0.11 -3.51 4.09 -9.40 -0.04 -3.55 16 10 H 0.13 3.31 8.14 -2.39 -0.02 3.29 16 11 C 0.17 8.23 4.84 86.66 0.42 8.65 16 12 N -0.62 -31.53 3.38 -697.73 -2.35 -33.89 16 13 C -0.24 -13.84 10.25 84.04 0.86 -12.98 16 14 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 15 C -0.06 -3.58 5.48 84.86 0.47 -3.11 16 16 N -0.95 -56.61 10.16 21.65 0.22 -56.39 16 17 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 C 0.14 5.29 6.62 86.58 0.57 5.86 16 22 C -0.09 -2.54 4.09 -9.41 -0.04 -2.58 16 23 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 24 C 0.11 2.33 4.26 86.66 0.37 2.70 16 25 C -0.15 -3.05 7.92 22.63 0.18 -2.87 16 26 C 0.13 2.38 6.78 42.54 0.29 2.66 16 27 C -0.10 -1.06 10.16 71.23 0.72 -0.34 16 28 N -0.49 -10.88 10.16 -172.22 -1.75 -12.63 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.14 3.69 7.92 -2.91 -0.02 3.67 16 33 H 0.03 1.36 7.47 -2.39 -0.02 1.34 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.06 3.07 5.83 -2.39 -0.01 3.06 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.01 0.33 7.47 -2.39 -0.02 0.31 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.82 6.81 -2.38 -0.02 1.80 16 41 H 0.12 1.55 6.42 -2.39 -0.02 1.54 16 42 H 0.18 2.45 4.54 -2.91 -0.01 2.43 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.60 8.08 -2.39 -0.02 0.58 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.12 357.26 2.48 -75.64 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.00 Total: 9.47 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.12 Total: 15.90 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -6.60 Total: -124.41 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.12 2.48 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048841718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.814 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds