Wall clock time and date at job start Tue Mar 31 2020 11:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.41848 * 2 1 4 4 N 1.31852 * 120.76089 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.73112 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76124 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.41668 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47496 * 89.99596 * 7 6 5 9 9 O 1.21284 * 119.99721 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46646 * 125.32694 * 180.02562 * 10 8 7 12 12 C 1.53694 * 108.00784 * 179.20110 * 11 10 8 13 13 H 1.08990 * 112.55950 * 105.91046 * 12 11 10 14 14 C 1.53730 * 109.33606 * 232.44381 * 12 11 10 15 15 N 1.46666 * 107.94464 * 93.74595 * 14 12 11 16 16 C 1.36941 * 125.33923 * 179.46965 * 15 14 12 17 17 H 1.08001 * 119.99806 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99770 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00478 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99693 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47294 * 119.99676 * 20 18 16 23 23 H 1.48498 * 109.47170 * 239.99808 * 20 18 16 24 24 C 1.46780 * 109.32254 * 359.45255 * 15 14 12 25 25 C 1.53965 * 106.62851 * 18.51685 * 24 15 14 26 26 H 1.09000 * 113.60846 * 94.61379 * 25 24 15 27 27 C 1.46746 * 125.33147 * 0.04243 * 10 8 7 28 28 C 1.38626 * 120.42192 * 180.24711 * 2 1 3 29 29 H 1.08995 * 109.47001 * 90.00232 * 1 2 3 30 30 H 1.08998 * 109.46939 * 209.99990 * 1 2 3 31 31 H 1.09005 * 109.47230 * 330.00320 * 1 2 3 32 32 H 1.08004 * 119.61974 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.61720 * 179.97438 * 5 4 3 34 34 H 1.09008 * 109.46849 * 329.99514 * 7 6 5 35 35 H 1.09004 * 109.47143 * 210.00111 * 7 6 5 36 36 H 1.09000 * 109.75624 * 298.83987 * 11 10 8 37 37 H 1.08998 * 109.76321 * 59.55283 * 11 10 8 38 38 H 1.09000 * 109.76904 * 213.36600 * 14 12 11 39 39 H 1.08998 * 109.77377 * 334.12492 * 14 12 11 40 40 H 0.96994 * 119.99769 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.03039 * 259.22349 * 24 15 14 42 42 H 1.09004 * 110.02222 * 137.80854 * 24 15 14 43 43 H 1.08997 * 110.00539 * 317.62301 * 27 10 8 44 44 H 1.09001 * 110.00702 * 78.99157 * 27 10 8 45 45 H 1.08005 * 120.78972 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0016 7 6 4.4027 -2.4191 -0.0033 8 6 4.6738 -2.8441 1.4168 9 8 4.2528 -2.1791 2.3396 10 7 5.3840 -3.9631 1.6615 11 6 5.7149 -4.4835 2.9920 12 6 6.5151 -5.7828 2.8085 13 1 7.5754 -5.6551 3.0264 14 6 5.8617 -6.9038 3.6328 15 7 4.9361 -7.6288 2.7558 16 6 4.1731 -8.7042 3.1254 17 1 4.2259 -9.0820 4.1358 18 6 3.3318 -9.3085 2.2014 19 7 3.2678 -8.8483 0.9699 20 14 2.2904 -10.7750 2.7057 21 1 2.5441 -11.0946 4.1336 22 1 0.8537 -10.4496 2.5186 23 1 2.6460 -11.9469 1.8659 24 6 4.9557 -7.0206 1.4201 25 6 6.2499 -6.1912 1.3326 26 1 7.0827 -6.7282 0.8784 27 6 5.9475 -4.8513 0.6383 28 6 2.2090 -1.1954 -0.0052 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1287 -0.0023 34 1 5.3482 -2.2484 -0.5183 35 1 3.8456 -3.2026 -0.5171 36 1 6.3163 -3.7537 3.5340 37 1 4.7988 -4.6899 3.5453 38 1 6.6285 -7.5844 4.0027 39 1 5.3143 -6.4737 4.4715 40 1 2.6802 -9.2709 0.3242 41 1 4.0882 -6.3734 1.2918 42 1 4.9582 -7.7980 0.6561 43 1 5.2251 -5.0015 -0.1640 44 1 6.8665 -4.4231 0.2379 45 1 1.6888 -2.1419 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048962262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:19 Heat of formation + Delta-G solvation = 26.192169 kcal Electronic energy + Delta-G solvation = -26225.638403 eV Core-core repulsion = 22629.458690 eV Total energy + Delta-G solvation = -3596.179713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63269 -39.94684 -38.15469 -34.99457 -33.71630 -33.61464 -32.34432 -30.17699 -29.91076 -28.13326 -27.40009 -25.61822 -25.34202 -23.41923 -22.88073 -21.43889 -20.20814 -19.45895 -19.02363 -17.16318 -17.03252 -16.83357 -16.71584 -15.92903 -15.29998 -14.81407 -14.45440 -14.28346 -14.17522 -13.71576 -13.35914 -13.27544 -13.16084 -13.09389 -12.93548 -12.63996 -12.58692 -12.21348 -12.08092 -11.86207 -11.62060 -11.55492 -11.40204 -10.99669 -10.85621 -10.47312 -10.16228 -10.12954 -9.90205 -9.86694 -9.61749 -9.54088 -9.50018 -8.86434 -8.68257 -8.37250 -6.88885 -5.74175 -3.12555 1.00934 1.22963 2.77886 3.17626 3.35965 3.42136 3.44111 3.75387 4.31045 4.44195 4.55694 4.62271 4.65084 4.81377 4.89447 4.92044 4.99600 5.08992 5.20684 5.25739 5.37600 5.40265 5.43876 5.46383 5.57710 5.60078 5.68043 5.69053 5.74620 5.85248 6.03169 6.12285 6.15443 6.18694 6.19498 6.28201 6.45999 6.50682 6.63494 6.66576 6.81529 7.43809 7.57705 7.71921 7.76231 7.90023 8.26459 8.32564 9.17044 9.77518 10.40435 11.32398 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003298 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.610166 B = 8486.972255 C = 9621.259355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.092 3.908 4 N -0.483 5.483 5 C 0.105 3.895 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.529 3.471 9 O -0.541 6.541 10 N -0.606 5.606 11 C 0.121 3.879 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.144 3.856 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.171 3.829 25 C -0.123 4.123 26 H 0.095 0.905 27 C 0.109 3.891 28 C -0.062 4.062 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.251 0.749 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 14.561 -5.597 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.065 4.065 4 N -0.190 5.190 5 C -0.052 4.052 6 C -0.109 4.109 7 C -0.136 4.136 8 C 0.317 3.683 9 O -0.419 6.419 10 N -0.340 5.340 11 C -0.001 4.001 12 C -0.129 4.129 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.046 3.954 25 C -0.143 4.143 26 H 0.113 0.887 27 C -0.014 4.014 28 C -0.088 4.088 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.666 15.652 -5.184 16.702 hybrid contribution -0.979 -1.692 0.278 1.975 sum 1.687 13.959 -4.906 14.892 Atomic orbital electron populations 1.20720 0.90209 1.03274 1.02494 1.20898 0.97591 0.94044 1.01339 1.22608 0.89993 0.97334 0.96589 1.67644 1.08368 1.31053 1.11930 1.22519 1.00041 0.87098 0.95566 1.20312 0.94316 0.95442 1.00811 1.20592 1.01708 0.95973 0.95310 1.20015 0.77648 0.79637 0.90961 1.90716 1.51188 1.53617 1.46341 1.48206 1.53189 1.24088 1.08482 1.21860 0.99563 0.94355 0.84364 1.22758 0.98744 0.94254 0.97130 0.89241 1.21144 0.92479 0.91510 0.93062 1.44251 1.47777 1.33796 1.06985 1.19119 1.16055 1.03866 0.96155 0.90356 1.24777 1.00004 0.99803 0.95935 1.69865 1.41625 1.42449 1.03179 0.86007 0.79909 0.82028 0.77616 1.20500 1.21762 1.21706 1.21474 0.89471 0.94919 0.89534 1.23308 1.02037 0.95085 0.93844 0.88659 1.22006 0.97897 0.90130 0.91368 1.21398 0.93359 0.98473 0.95580 0.90929 0.91153 0.91213 0.83056 0.83143 0.87669 0.87431 0.92228 0.90999 0.95666 0.95683 0.93818 0.96380 0.88870 0.90472 0.92056 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.04 36.01 0.36 -0.55 16 2 C -0.14 -1.55 5.90 -104.48 -0.62 -2.16 16 3 C 0.09 1.07 10.86 -17.55 -0.19 0.88 16 4 N -0.48 -6.51 10.36 -13.25 -0.14 -6.65 16 5 C 0.10 1.34 10.86 -17.55 -0.19 1.15 16 6 C -0.11 -1.36 4.39 -104.48 -0.46 -1.82 16 7 C -0.10 -1.12 4.89 -29.04 -0.14 -1.26 16 8 C 0.53 8.40 7.83 -10.99 -0.09 8.31 16 9 O -0.54 -10.65 16.34 5.55 0.09 -10.56 16 10 N -0.61 -9.48 3.30 -172.39 -0.57 -10.05 16 11 C 0.12 2.00 6.22 -3.60 -0.02 1.98 16 12 C -0.11 -1.76 4.02 -88.60 -0.36 -2.11 16 13 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.14 2.88 6.62 -3.57 -0.02 2.85 16 15 N -0.60 -14.82 3.38 -171.84 -0.58 -15.40 16 16 C -0.22 -6.09 10.25 -15.06 -0.15 -6.25 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 19 N -0.92 -25.99 10.16 55.49 0.56 -25.42 16 20 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.17 3.85 4.92 -3.39 -0.02 3.83 16 25 C -0.12 -2.02 4.17 -88.36 -0.37 -2.39 16 26 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 27 C 0.11 1.49 5.75 -3.43 -0.02 1.47 16 28 C -0.06 -0.78 9.54 -39.28 -0.37 -1.15 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 0.93 8.09 -51.92 -0.42 0.51 16 35 H 0.11 1.15 7.83 -51.93 -0.41 0.74 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.40 7.29 -51.93 -0.38 1.02 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.02 0.45 7.71 -51.93 -0.40 0.05 16 42 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 43 H 0.08 1.02 7.41 -51.93 -0.39 0.63 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -33.36 363.47 -9.82 -43.19 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.89 Total: 0.30 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.75 Total: 2.43 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.72 Total: -57.52 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.36 -9.82 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048962262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds