Wall clock time and date at job start Tue Mar 31 2020 11:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.41848 * 2 1 4 4 N 1.31852 * 120.76089 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.73112 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76124 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.41668 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47496 * 89.99596 * 7 6 5 9 9 O 1.21284 * 119.99721 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46646 * 125.32694 * 180.02562 * 10 8 7 12 12 C 1.53694 * 108.00784 * 179.20110 * 11 10 8 13 13 H 1.08990 * 112.55950 * 105.91046 * 12 11 10 14 14 C 1.53730 * 109.33606 * 232.44381 * 12 11 10 15 15 N 1.46666 * 107.94464 * 93.74595 * 14 12 11 16 16 C 1.36941 * 125.33923 * 179.46965 * 15 14 12 17 17 H 1.08001 * 119.99806 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99770 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00478 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99693 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47113 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47294 * 119.99676 * 20 18 16 23 23 H 1.48498 * 109.47170 * 239.99808 * 20 18 16 24 24 C 1.46780 * 109.32254 * 359.45255 * 15 14 12 25 25 C 1.53965 * 106.62851 * 18.51685 * 24 15 14 26 26 H 1.09000 * 113.60846 * 94.61379 * 25 24 15 27 27 C 1.46746 * 125.33147 * 0.04243 * 10 8 7 28 28 C 1.38626 * 120.42192 * 180.24711 * 2 1 3 29 29 H 1.08995 * 109.47001 * 90.00232 * 1 2 3 30 30 H 1.08998 * 109.46939 * 209.99990 * 1 2 3 31 31 H 1.09005 * 109.47230 * 330.00320 * 1 2 3 32 32 H 1.08004 * 119.61974 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.61720 * 179.97438 * 5 4 3 34 34 H 1.09008 * 109.46849 * 329.99514 * 7 6 5 35 35 H 1.09004 * 109.47143 * 210.00111 * 7 6 5 36 36 H 1.09000 * 109.75624 * 298.83987 * 11 10 8 37 37 H 1.08998 * 109.76321 * 59.55283 * 11 10 8 38 38 H 1.09000 * 109.76904 * 213.36600 * 14 12 11 39 39 H 1.08998 * 109.77377 * 334.12492 * 14 12 11 40 40 H 0.96994 * 119.99769 * 179.97438 * 19 18 16 41 41 H 1.08996 * 110.03039 * 259.22349 * 24 15 14 42 42 H 1.09004 * 110.02222 * 137.80854 * 24 15 14 43 43 H 1.08997 * 110.00539 * 317.62301 * 27 10 8 44 44 H 1.09001 * 110.00702 * 78.99157 * 27 10 8 45 45 H 1.08005 * 120.78972 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0016 7 6 4.4027 -2.4191 -0.0033 8 6 4.6738 -2.8441 1.4168 9 8 4.2528 -2.1791 2.3396 10 7 5.3840 -3.9631 1.6615 11 6 5.7149 -4.4835 2.9920 12 6 6.5151 -5.7828 2.8085 13 1 7.5754 -5.6551 3.0264 14 6 5.8617 -6.9038 3.6328 15 7 4.9361 -7.6288 2.7558 16 6 4.1731 -8.7042 3.1254 17 1 4.2259 -9.0820 4.1358 18 6 3.3318 -9.3085 2.2014 19 7 3.2678 -8.8483 0.9699 20 14 2.2904 -10.7750 2.7057 21 1 2.5441 -11.0946 4.1336 22 1 0.8537 -10.4496 2.5186 23 1 2.6460 -11.9469 1.8659 24 6 4.9557 -7.0206 1.4201 25 6 6.2499 -6.1912 1.3326 26 1 7.0827 -6.7282 0.8784 27 6 5.9475 -4.8513 0.6383 28 6 2.2090 -1.1954 -0.0052 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1287 -0.0023 34 1 5.3482 -2.2484 -0.5183 35 1 3.8456 -3.2026 -0.5171 36 1 6.3163 -3.7537 3.5340 37 1 4.7988 -4.6899 3.5453 38 1 6.6285 -7.5844 4.0027 39 1 5.3143 -6.4737 4.4715 40 1 2.6802 -9.2709 0.3242 41 1 4.0882 -6.3734 1.2918 42 1 4.9582 -7.7980 0.6561 43 1 5.2251 -5.0015 -0.1640 44 1 6.8665 -4.4231 0.2379 45 1 1.6888 -2.1419 -0.0088 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048962262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:18 Heat of formation + Delta-G solvation = 5.534389 kcal Electronic energy + Delta-G solvation = -26226.534191 eV Core-core repulsion = 22629.458690 eV Total energy + Delta-G solvation = -3597.075501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73463 -41.07263 -39.52116 -36.60477 -34.66809 -34.50729 -34.09003 -31.66184 -31.46360 -29.24780 -28.19109 -27.31110 -26.84981 -24.66677 -24.02745 -22.41222 -21.89667 -20.85088 -20.20760 -18.87283 -18.20135 -17.92173 -17.73624 -17.25781 -16.66112 -16.41203 -15.84298 -15.49071 -15.28699 -15.06751 -14.82345 -14.51964 -14.18186 -14.07036 -14.00896 -13.62085 -13.53157 -13.44912 -13.34237 -13.24337 -13.21031 -13.00417 -12.77560 -12.69351 -12.34594 -11.97744 -11.86722 -11.81693 -11.59064 -11.26243 -11.09812 -10.72496 -10.53226 -10.44096 -9.74719 -9.62364 -8.87327 -7.81289 -5.21621 0.10990 0.30035 1.45130 1.45759 1.55673 1.57790 2.03018 2.48161 2.82282 3.30015 3.41009 3.45303 3.52619 3.69502 3.79888 3.80919 3.94380 3.97148 4.02568 4.05553 4.22243 4.27311 4.36770 4.40434 4.52525 4.58540 4.67120 4.75648 4.78559 4.79346 4.85990 4.88652 4.94868 4.98773 5.08075 5.15700 5.24004 5.26412 5.32810 5.42717 5.47485 5.67735 5.77104 5.83097 6.29166 6.52715 6.99070 7.11069 7.12943 7.80409 8.40805 9.22610 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003298 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.610166 B = 8486.972255 C = 9621.259355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.083 3.917 4 N -0.505 5.505 5 C 0.092 3.908 6 C -0.117 4.117 7 C -0.085 4.085 8 C 0.524 3.476 9 O -0.588 6.588 10 N -0.610 5.610 11 C 0.122 3.878 12 C -0.092 4.092 13 H 0.134 0.866 14 C 0.136 3.864 15 N -0.626 5.626 16 C -0.241 4.241 17 H 0.076 0.924 18 C -0.062 4.062 19 N -0.944 5.944 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.295 1.295 23 H -0.287 1.287 24 C 0.179 3.821 25 C -0.112 4.112 26 H 0.121 0.879 27 C 0.113 3.887 28 C -0.084 4.084 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.014 0.986 40 H 0.247 0.753 41 H -0.019 1.019 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 15.356 -6.434 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.074 4.074 4 N -0.212 5.212 5 C -0.065 4.065 6 C -0.120 4.120 7 C -0.125 4.125 8 C 0.314 3.686 9 O -0.468 6.468 10 N -0.342 5.342 11 C -0.001 4.001 12 C -0.111 4.111 13 H 0.152 0.848 14 C 0.011 3.989 15 N -0.352 5.352 16 C -0.370 4.370 17 H 0.094 0.906 18 C -0.255 4.255 19 N -0.594 5.594 20 Si 0.804 3.196 21 H -0.195 1.195 22 H -0.222 1.222 23 H -0.214 1.214 24 C 0.054 3.946 25 C -0.132 4.132 26 H 0.139 0.861 27 C -0.009 4.009 28 C -0.110 4.110 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.056 0.944 41 H -0.001 1.001 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.128 0.872 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.133 16.440 -6.024 17.990 hybrid contribution -1.483 -1.944 0.607 2.519 sum 2.650 14.496 -5.417 15.701 Atomic orbital electron populations 1.20776 0.88205 1.03814 1.03670 1.21229 0.99138 0.93555 1.00243 1.23082 0.89758 0.98564 0.96001 1.67665 1.09325 1.31575 1.12672 1.22831 1.00980 0.87021 0.95649 1.20465 0.94549 0.95921 1.01040 1.20621 1.03536 0.95673 0.92666 1.20747 0.76547 0.79078 0.92190 1.90690 1.52897 1.55143 1.48120 1.48337 1.53149 1.24196 1.08518 1.21751 0.98018 0.95257 0.85039 1.22753 1.00469 0.92060 0.95800 0.84847 1.21341 0.91956 0.92657 0.92956 1.44589 1.48164 1.33679 1.08747 1.19439 1.16611 1.04790 0.96206 0.90565 1.25551 1.01411 1.02424 0.96145 1.70098 1.42048 1.43394 1.03822 0.85058 0.77825 0.79017 0.77720 1.19451 1.22239 1.21417 1.21226 0.91607 0.93958 0.87839 1.23210 0.99335 0.95734 0.94928 0.86071 1.22146 1.00040 0.88293 0.90437 1.21651 0.93870 0.99145 0.96313 0.89331 0.91631 0.89636 0.80525 0.81497 0.84003 0.86457 0.90599 0.95168 0.94692 0.96757 0.94376 1.00061 0.92227 0.90083 0.87180 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.04 71.24 0.71 -0.93 16 2 C -0.14 -3.06 5.90 -19.77 -0.12 -3.17 16 3 C 0.08 1.84 10.86 84.69 0.92 2.76 16 4 N -0.50 -13.19 10.36 -195.84 -2.03 -15.22 16 5 C 0.09 2.26 10.86 84.67 0.92 3.18 16 6 C -0.12 -2.90 4.39 -19.78 -0.09 -2.99 16 7 C -0.09 -1.84 4.89 29.10 0.14 -1.69 16 8 C 0.52 16.14 7.83 87.66 0.69 16.83 16 9 O -0.59 -23.34 16.34 -3.04 -0.05 -23.39 16 10 N -0.61 -18.04 3.30 -817.70 -2.70 -20.75 16 11 C 0.12 3.93 6.22 86.59 0.54 4.47 16 12 C -0.09 -2.73 4.02 -9.48 -0.04 -2.76 16 13 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 14 C 0.14 5.38 6.62 86.59 0.57 5.96 16 15 N -0.63 -31.38 3.38 -697.57 -2.36 -33.73 16 16 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.06 -3.49 5.48 84.86 0.47 -3.02 16 19 N -0.94 -54.74 10.16 21.65 0.22 -54.52 16 20 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 C 0.18 8.16 4.92 86.65 0.43 8.59 16 25 C -0.11 -3.44 4.17 -9.33 -0.04 -3.48 16 26 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 27 C 0.11 2.72 5.75 86.64 0.50 3.21 16 28 C -0.08 -2.08 9.54 22.47 0.21 -1.87 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.08 1.03 8.09 -2.38 -0.02 1.02 16 32 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.14 1.98 8.09 -2.38 -0.02 1.96 16 35 H 0.12 2.31 7.83 -2.39 -0.02 2.29 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.03 1.21 7.29 -2.39 -0.02 1.19 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.01 0.60 7.44 -2.39 -0.02 0.58 16 40 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 41 H -0.02 -0.97 7.71 -2.39 -0.02 -0.98 16 42 H 0.06 3.12 6.19 -2.38 -0.01 3.10 16 43 H 0.08 1.93 7.41 -2.39 -0.02 1.91 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -76.52 363.47 2.77 -73.75 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.98 Total: 13.97 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.68 Total: 12.49 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.87 Total: -124.22 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -76.52 2.77 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048962262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.285 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds