Wall clock time and date at job start Tue Mar 31 2020 10:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38347 * 119.45845 * 2 1 4 4 C 1.38361 * 119.29870 * 179.74693 * 3 2 1 5 5 C 1.40024 * 118.29020 * 0.53703 * 4 3 2 6 6 C 1.47838 * 120.56130 * 179.73555 * 5 4 3 7 7 O 1.21552 * 119.99796 * 47.92937 * 6 5 4 8 8 N 1.34767 * 120.00226 * 227.93322 * 6 5 4 9 9 C 1.47859 * 122.22697 * 355.72924 * 8 6 5 10 10 C 1.52712 * 111.05485 * 127.24452 * 9 8 6 11 11 C 1.53871 * 111.52417 * 48.54009 * 10 9 8 12 12 C 1.51079 * 107.34397 * 303.06986 * 11 10 9 13 13 H 1.09001 * 108.73826 * 309.15139 * 12 11 10 14 14 C 1.45728 * 122.23003 * 175.45016 * 8 6 5 15 15 H 1.09004 * 111.07094 * 119.73525 * 14 8 6 16 16 C 1.53433 * 116.36946 * 350.36913 * 14 8 6 17 17 C 1.55468 * 101.66990 * 207.26825 * 16 14 8 18 18 N 1.45032 * 119.19480 * 183.88705 * 12 11 10 19 19 C 1.36931 * 126.56102 * 28.74310 * 18 12 11 20 20 H 1.07992 * 120.00275 * 359.97438 * 19 18 12 21 21 C 1.38815 * 119.99616 * 180.02562 * 19 18 12 22 22 N 1.31609 * 120.00338 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99835 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47202 * 89.99342 * 23 21 19 25 25 H 1.48497 * 109.47230 * 209.99878 * 23 21 19 26 26 H 1.48509 * 109.47088 * 329.99947 * 23 21 19 27 27 C 1.39515 * 118.87792 * 359.46602 * 5 4 3 28 28 N 1.31695 * 120.57155 * 0.27063 * 27 5 4 29 29 H 1.09002 * 109.47082 * 269.97531 * 1 2 3 30 30 H 1.08997 * 109.46758 * 29.97728 * 1 2 3 31 31 H 1.08999 * 109.46939 * 149.97685 * 1 2 3 32 32 H 1.08000 * 120.35425 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.85509 * 180.30366 * 4 3 2 34 34 H 1.08994 * 109.16004 * 247.65114 * 9 8 6 35 35 H 1.08999 * 109.15824 * 6.83746 * 9 8 6 36 36 H 1.08997 * 109.06909 * 169.06770 * 10 9 8 37 37 H 1.09002 * 109.06936 * 288.08302 * 10 9 8 38 38 H 1.08999 * 109.88478 * 62.52817 * 11 10 9 39 39 H 1.09004 * 109.88399 * 183.61209 * 11 10 9 40 40 H 1.08998 * 110.98598 * 89.17424 * 16 14 8 41 41 H 1.08993 * 111.02273 * 325.38372 * 16 14 8 42 42 H 1.09001 * 109.96592 * 263.22122 * 17 16 14 43 43 H 1.09001 * 109.95902 * 141.97760 * 17 16 14 44 44 H 0.97000 * 120.00234 * 180.02562 * 22 21 19 45 45 H 1.08001 * 119.71695 * 180.25153 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0053 5 6 4.2313 -0.0341 -0.0010 6 6 5.7083 -0.0967 -0.0016 7 8 6.3456 0.5783 0.7831 8 7 6.3483 -0.9022 -0.8722 9 6 5.6228 -1.8122 -1.7842 10 6 6.0657 -1.6067 -3.2311 11 6 7.5993 -1.5966 -3.3561 12 6 8.1183 -0.5093 -2.4446 13 1 7.5757 0.4124 -2.6548 14 6 7.8012 -0.9299 -0.9816 15 1 8.1920 -1.9229 -0.7598 16 6 8.5628 0.1639 -0.2215 17 6 9.8575 0.2946 -1.0723 18 7 9.5391 -0.2188 -2.4276 19 6 10.4185 -0.3869 -3.4636 20 1 10.0702 -0.7720 -4.4105 21 6 11.7580 -0.0634 -3.2964 22 7 12.1827 0.4053 -2.1422 23 14 12.9579 -0.2934 -4.7095 24 1 13.0147 0.9508 -5.5181 25 1 14.3077 -0.5945 -4.1687 26 1 12.5049 -1.4195 -5.5652 27 6 3.4716 -1.2043 -0.0010 28 7 2.1559 -1.1487 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6444 2.1381 0.0004 33 1 4.1275 2.1264 0.0104 34 1 5.8207 -2.8436 -1.4925 35 1 4.5530 -1.6184 -1.7065 36 1 5.6637 -2.4130 -3.8445 37 1 5.6737 -0.6557 -3.5919 38 1 8.0026 -2.5616 -3.0490 39 1 7.8859 -1.3849 -4.3862 40 1 8.7940 -0.1557 0.7946 41 1 8.0028 1.0989 -0.2166 42 1 10.6565 -0.2989 -0.6278 43 1 10.1595 1.3403 -1.1320 44 1 13.1187 0.6318 -2.0255 45 1 3.9669 -2.1640 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049325182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:20 Heat of formation + Delta-G solvation = 21.356630 kcal Electronic energy + Delta-G solvation = -26956.458993 eV Core-core repulsion = 23360.069596 eV Total energy + Delta-G solvation = -3596.389397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12654 -40.91054 -39.16052 -37.03474 -34.55385 -34.10328 -33.67911 -33.34493 -30.95224 -29.83633 -28.87194 -26.43241 -26.19417 -24.71610 -23.67919 -22.87472 -22.44065 -21.51575 -20.50687 -18.77776 -17.94496 -17.78631 -17.25491 -16.91926 -16.80721 -16.30377 -15.79754 -15.66218 -15.53583 -15.24417 -14.96692 -14.77201 -14.33738 -14.15898 -14.12166 -13.90587 -13.49532 -13.30784 -13.17672 -13.07962 -12.95170 -12.88259 -12.73777 -12.31529 -12.10205 -11.98271 -11.82186 -11.73956 -11.61234 -11.50377 -10.96972 -10.91146 -10.73278 -10.37639 -9.91616 -9.63212 -8.93147 -7.85038 -5.22220 -0.28223 0.17271 1.45531 1.47761 1.54772 1.56789 1.85447 2.49729 2.67721 3.13657 3.33554 3.34768 3.48466 3.73598 3.78498 3.86237 3.94627 3.96927 4.02814 4.07450 4.20543 4.29359 4.33022 4.52123 4.54472 4.60892 4.63683 4.72428 4.73085 4.84408 4.86733 4.97236 5.01954 5.09433 5.09918 5.11585 5.19724 5.25618 5.38140 5.47153 5.55313 5.57159 5.61917 5.69912 6.16325 6.36885 6.83978 7.03422 7.04602 7.74137 8.43973 9.26859 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.003271 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.693641 B = 8558.427177 C = 9048.760011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.137 3.863 3 C -0.167 4.167 4 C -0.036 4.036 5 C -0.196 4.196 6 C 0.561 3.439 7 O -0.567 6.567 8 N -0.590 5.590 9 C 0.097 3.903 10 C -0.119 4.119 11 C -0.110 4.110 12 C 0.154 3.846 13 H -0.003 1.003 14 C 0.131 3.869 15 H 0.088 0.912 16 C -0.111 4.111 17 C 0.183 3.817 18 N -0.611 5.611 19 C -0.233 4.233 20 H 0.090 0.910 21 C -0.069 4.069 22 N -0.955 5.955 23 Si 0.979 3.021 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.263 1.263 27 C 0.136 3.864 28 N -0.500 5.500 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.028 0.972 43 H -0.001 1.001 44 H 0.246 0.754 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.645 -4.241 1.668 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.000 4.000 3 C -0.186 4.186 4 C -0.062 4.062 5 C -0.201 4.201 6 C 0.350 3.650 7 O -0.447 6.447 8 N -0.321 5.321 9 C -0.024 4.024 10 C -0.157 4.157 11 C -0.149 4.149 12 C 0.045 3.955 13 H 0.014 0.986 14 C 0.026 3.974 15 H 0.105 0.895 16 C -0.150 4.150 17 C 0.058 3.942 18 N -0.336 5.336 19 C -0.362 4.362 20 H 0.108 0.892 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.808 3.192 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.187 1.187 27 C -0.022 4.022 28 N -0.210 5.210 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.018 0.982 44 H 0.056 0.944 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -25.596 -4.638 2.022 26.092 hybrid contribution 2.226 1.218 -0.394 2.568 sum -23.370 -3.420 1.627 23.675 Atomic orbital electron populations 1.20884 0.85960 1.04929 1.04359 1.22129 0.98961 0.87959 0.90984 1.22240 0.93336 1.00958 1.02092 1.21798 0.95407 0.97051 0.91959 1.20822 0.92863 0.97050 1.09342 1.18517 0.87612 0.78845 0.80013 1.90785 1.68226 1.45070 1.40615 1.48003 1.06102 1.40926 1.37114 1.22324 0.97285 0.93910 0.88836 1.21870 0.93939 1.03711 0.96231 1.21404 0.95994 0.98171 0.99322 1.20927 0.84747 0.95483 0.94314 0.98572 1.22091 0.79366 0.98869 0.97087 0.89466 1.22654 0.95768 0.98682 0.97890 1.21439 0.93052 0.95754 0.83947 1.44338 1.03960 1.74951 1.10323 1.19415 0.88771 1.36158 0.91809 0.89229 1.25702 0.98960 1.01813 0.99721 1.70171 1.14613 1.50902 1.24723 0.85063 0.77935 0.77963 0.78287 1.21622 1.22284 1.18745 1.23168 0.89296 0.97541 0.92178 1.67661 1.09110 1.30026 1.14154 0.88969 0.88181 0.90162 0.80970 0.84394 0.88446 0.87737 0.86911 0.92359 0.91274 0.92339 0.91535 0.91516 0.95367 0.98226 0.94442 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.16 71.24 0.72 -0.15 16 2 C 0.14 2.15 6.78 42.57 0.29 2.44 16 3 C -0.17 -2.55 9.72 22.32 0.22 -2.33 16 4 C -0.04 -0.77 9.88 22.73 0.22 -0.55 16 5 C -0.20 -4.79 5.16 -20.00 -0.10 -4.90 16 6 C 0.56 17.90 7.23 86.79 0.63 18.53 16 7 O -0.57 -22.66 13.98 -3.88 -0.05 -22.71 16 8 N -0.59 -17.74 2.91 -794.54 -2.31 -20.05 16 9 C 0.10 2.01 5.33 86.02 0.46 2.47 16 10 C -0.12 -2.63 5.92 30.79 0.18 -2.45 16 11 C -0.11 -3.55 5.45 30.26 0.16 -3.39 16 12 C 0.15 6.41 2.58 45.50 0.12 6.52 16 13 H 0.00 -0.14 8.04 -2.39 -0.02 -0.16 16 14 C 0.13 4.95 3.33 46.14 0.15 5.11 16 15 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 16 C -0.11 -4.95 4.95 31.59 0.16 -4.80 16 17 C 0.18 9.83 5.47 86.87 0.48 10.31 16 18 N -0.61 -32.25 3.35 -670.50 -2.25 -34.49 16 19 C -0.23 -13.04 9.94 84.04 0.84 -12.20 16 20 H 0.09 4.70 7.31 -2.91 -0.02 4.68 16 21 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 22 N -0.96 -59.15 10.46 21.65 0.23 -58.92 16 23 Si 0.98 46.12 29.55 68.60 2.03 48.14 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.14 2.76 8.59 85.02 0.73 3.49 16 28 N -0.50 -9.78 10.25 -182.82 -1.87 -11.65 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.40 8.07 -2.39 -0.02 0.38 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.79 4.59 -2.39 -0.01 1.78 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 39 H 0.06 1.99 7.70 -2.39 -0.02 1.97 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.07 3.12 6.34 -2.39 -0.02 3.10 16 42 H 0.03 1.65 7.19 -2.39 -0.02 1.63 16 43 H 0.00 -0.03 7.81 -2.39 -0.02 -0.05 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.18 2.90 6.86 -2.91 -0.02 2.88 16 Total: -1.00 -75.71 351.25 2.47 -73.23 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.99 Total: 11.88 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.72 Total: 14.58 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.21 Total: -125.12 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.71 2.47 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049325182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.591 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds