Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38357 * 120.34652 * 2 1 4 4 N 1.31924 * 121.08037 * 179.67845 * 3 2 1 5 5 C 1.31696 * 121.87672 * 0.62726 * 4 3 2 6 6 C 1.39523 * 120.56775 * 359.66346 * 5 4 3 7 7 C 1.47838 * 120.56018 * 180.02562 * 6 5 4 8 8 O 1.21551 * 119.99921 * 313.85662 * 7 6 5 9 9 N 1.34777 * 120.00266 * 133.86540 * 7 6 5 10 10 C 1.46807 * 119.57378 * 4.22555 * 9 7 6 11 11 C 1.53460 * 107.59032 * 232.06648 * 10 9 7 12 12 C 1.52741 * 108.43959 * 301.91488 * 11 10 9 13 13 C 1.53006 * 110.80399 * 63.76972 * 12 11 10 14 14 H 1.09006 * 111.38574 * 69.73907 * 13 12 11 15 15 C 1.45116 * 119.58071 * 183.96141 * 9 7 6 16 16 H 1.08999 * 109.96871 * 11.92919 * 15 9 7 17 17 C 1.53900 * 111.89925 * 248.65768 * 15 9 7 18 18 C 1.54566 * 102.55373 * 203.53909 * 17 15 9 19 19 N 1.47116 * 107.25294 * 21.71080 * 18 17 15 20 20 C 1.36936 * 125.77052 * 182.59744 * 19 18 17 21 21 H 1.07996 * 120.00800 * 184.45117 * 20 19 18 22 22 C 1.38821 * 119.99771 * 4.44839 * 20 19 18 23 23 N 1.31617 * 119.99648 * 352.31725 * 22 20 19 24 24 Si 1.86799 * 119.99919 * 172.31791 * 22 20 19 25 25 H 1.48502 * 109.47007 * 94.98701 * 24 22 20 26 26 H 1.48505 * 109.46933 * 214.98478 * 24 22 20 27 27 H 1.48496 * 109.47141 * 334.98397 * 24 22 20 28 28 C 1.38353 * 120.35023 * 180.27284 * 2 1 3 29 29 H 1.08997 * 109.47344 * 269.72610 * 1 2 3 30 30 H 1.09003 * 109.47420 * 29.72645 * 1 2 3 31 31 H 1.09004 * 109.47078 * 149.72868 * 1 2 3 32 32 H 1.08003 * 119.46054 * 359.96981 * 3 2 1 33 33 H 1.07999 * 119.71729 * 179.68240 * 5 4 3 34 34 H 1.09003 * 109.83292 * 351.58516 * 10 9 7 35 35 H 1.08998 * 109.83107 * 112.47466 * 10 9 7 36 36 H 1.08996 * 109.64800 * 61.59904 * 11 10 9 37 37 H 1.09001 * 109.64028 * 182.02223 * 11 10 9 38 38 H 1.09003 * 109.20885 * 184.11448 * 12 11 10 39 39 H 1.09002 * 109.20994 * 303.42864 * 12 11 10 40 40 H 1.09002 * 110.72625 * 85.28656 * 17 15 9 41 41 H 1.08997 * 110.96745 * 321.91052 * 17 15 9 42 42 H 1.09003 * 109.88766 * 262.29830 * 18 17 15 43 43 H 1.08998 * 109.88424 * 141.12259 * 18 17 15 44 44 H 0.96995 * 119.99881 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.85540 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2109 0.0063 5 6 4.2349 0.1016 0.0007 6 6 3.6054 -1.1435 -0.0053 7 6 4.4023 -2.3887 -0.0111 8 8 5.3444 -2.5038 -0.7706 9 7 4.0843 -3.3963 0.8256 10 6 2.8900 -3.2855 1.6722 11 6 3.3180 -3.5727 3.1176 12 6 3.9432 -4.9653 3.1688 13 6 5.2191 -5.0195 2.3261 14 1 6.0208 -4.4374 2.7808 15 6 4.9234 -4.5793 0.8739 16 1 5.8568 -4.3955 0.3418 17 6 4.2079 -5.8145 0.2988 18 6 4.9570 -6.9834 0.9782 19 7 5.5928 -6.4475 2.1918 20 6 6.3944 -7.1493 3.0520 21 1 6.7557 -6.6821 3.9562 22 6 6.7426 -8.4614 2.7619 23 7 6.1844 -9.0805 1.7434 24 14 8.0034 -9.3482 3.8171 25 1 7.3057 -10.1381 4.8633 26 1 8.8097 -10.2587 2.9648 27 1 8.8972 -8.3530 4.4619 28 6 2.2060 -1.1939 -0.0057 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6628 2.1275 -0.0005 33 1 5.3135 0.1562 0.0010 34 1 2.4786 -2.2786 1.6014 35 1 2.1431 -4.0132 1.3550 36 1 4.0496 -2.8307 3.4375 37 1 2.4471 -3.5344 3.7720 38 1 4.1853 -5.2120 4.2026 39 1 3.2287 -5.6936 2.7850 40 1 4.3235 -5.8579 -0.7842 41 1 3.1534 -5.8180 0.5745 42 1 5.7177 -7.3778 0.3044 43 1 4.2517 -7.7702 1.2457 44 1 6.4280 -9.9972 1.5404 45 1 1.6858 -2.1404 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049391014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = 37.446039 kcal Electronic energy + Delta-G solvation = -26992.114366 eV Core-core repulsion = 23396.422657 eV Total energy + Delta-G solvation = -3595.691708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12123 -39.77767 -37.91556 -35.45351 -33.96757 -32.81808 -32.46106 -31.77371 -29.05037 -28.29111 -27.61003 -25.57656 -24.40244 -23.81803 -23.00092 -21.96907 -20.38654 -19.96830 -18.33964 -17.45463 -17.25586 -16.91673 -16.68153 -15.90827 -14.97348 -14.79100 -14.43963 -14.34563 -14.20595 -13.87863 -13.78679 -13.48075 -13.33414 -13.09213 -12.92310 -12.84332 -12.52226 -12.22612 -12.10227 -11.96820 -11.39947 -11.06316 -11.03192 -10.86798 -10.66580 -10.63930 -10.27059 -10.10850 -10.02649 -9.87274 -9.69619 -9.64943 -9.44675 -9.20970 -8.60836 -8.36821 -6.88869 -5.74983 -3.07477 0.54488 0.88219 2.67251 3.01283 3.38986 3.45250 3.47030 3.50460 4.08354 4.34324 4.41230 4.46887 4.52795 4.64484 4.78794 4.90859 5.08550 5.19492 5.22462 5.25591 5.32225 5.34729 5.43295 5.52621 5.57234 5.58666 5.64579 5.76266 5.80608 5.82477 5.94821 6.05210 6.15269 6.26536 6.29263 6.32674 6.46551 6.53776 6.68465 6.90981 7.00672 7.46233 7.51693 7.59267 7.63648 7.79408 8.17154 8.22247 9.17616 9.77681 10.43615 11.36812 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003240 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164180 B = 8639.650634 C = 8810.790754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.145 4.145 3 C 0.113 3.887 4 N -0.482 5.482 5 C 0.143 3.857 6 C -0.166 4.166 7 C 0.556 3.444 8 O -0.531 6.531 9 N -0.583 5.583 10 C 0.093 3.907 11 C -0.132 4.132 12 C -0.130 4.130 13 C 0.156 3.844 14 H 0.061 0.939 15 C 0.131 3.869 16 H 0.103 0.897 17 C -0.151 4.151 18 C 0.180 3.820 19 N -0.598 5.598 20 C -0.229 4.229 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C -0.050 4.050 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.253 0.747 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 17.555 -1.822 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.045 4.045 4 N -0.189 5.189 5 C -0.014 4.014 6 C -0.171 4.171 7 C 0.343 3.657 8 O -0.408 6.408 9 N -0.313 5.313 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.170 4.170 13 C 0.047 3.953 14 H 0.079 0.921 15 C 0.027 3.973 16 H 0.121 0.879 17 C -0.190 4.190 18 C 0.055 3.945 19 N -0.322 5.322 20 C -0.357 4.357 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.076 4.076 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.653 18.011 -2.204 22.121 hybrid contribution 0.093 -1.490 0.604 1.610 sum -12.560 16.521 -1.600 20.815 Atomic orbital electron populations 1.20737 0.89650 1.03423 1.02909 1.20885 0.97891 0.93759 1.02133 1.22876 0.90020 0.97596 0.93981 1.67765 1.07998 1.30812 1.12355 1.22881 1.00688 0.85902 0.91964 1.21034 0.94617 0.95815 1.05650 1.18165 0.84003 0.82737 0.80797 1.90809 1.29578 1.81155 1.39250 1.47561 1.26835 1.17533 1.39404 1.22264 0.87389 1.02092 0.91151 1.21924 1.00816 0.99377 0.95015 1.22137 0.98984 0.94436 1.01490 1.21443 0.94348 0.87791 0.91676 0.92083 1.21807 0.94062 0.82865 0.98554 0.87895 1.23014 0.99440 0.96597 0.99954 1.21185 0.94926 0.90846 0.87524 1.44712 1.56895 1.03923 1.26718 1.19019 1.21633 0.94294 1.00731 0.90407 1.24811 1.00123 0.96906 0.98330 1.69965 1.44588 1.11827 1.30158 0.86144 0.81303 0.79453 0.79130 1.21727 1.21620 1.20612 1.21763 0.92639 0.98982 0.94207 0.90583 0.90956 0.91069 0.82467 0.81877 0.89420 0.90975 0.91796 0.91283 0.92080 0.91815 0.91949 0.92270 0.93001 0.94019 0.93708 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.03 36.00 0.36 -0.18 16 2 C -0.14 -1.16 5.89 -104.54 -0.62 -1.78 16 3 C 0.11 1.00 10.85 -17.47 -0.19 0.81 16 4 N -0.48 -5.57 10.35 -12.91 -0.13 -5.70 16 5 C 0.14 1.76 10.87 -17.13 -0.19 1.57 16 6 C -0.17 -2.06 5.13 -104.82 -0.54 -2.60 16 7 C 0.56 8.68 7.27 -12.33 -0.09 8.59 16 8 O -0.53 -10.27 16.35 5.32 0.09 -10.18 16 9 N -0.58 -8.77 2.74 -166.20 -0.45 -9.22 16 10 C 0.09 1.09 4.89 -3.64 -0.02 1.08 16 11 C -0.13 -1.67 6.11 -26.63 -0.16 -1.83 16 12 C -0.13 -2.20 5.10 -26.86 -0.14 -2.34 16 13 C 0.16 3.11 3.61 -66.14 -0.24 2.87 16 14 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 15 C 0.13 2.42 3.07 -67.36 -0.21 2.21 16 16 H 0.10 2.16 6.99 -51.93 -0.36 1.80 16 17 C -0.15 -2.84 6.05 -25.44 -0.15 -3.00 16 18 C 0.18 4.29 5.20 -2.88 -0.01 4.27 16 19 N -0.60 -14.73 2.91 -161.96 -0.47 -15.20 16 20 C -0.23 -6.22 10.28 -15.06 -0.15 -6.37 16 21 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 22 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 23 N -0.92 -26.63 10.39 55.49 0.58 -26.05 16 24 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C -0.05 -0.48 7.10 -38.87 -0.28 -0.76 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.09 0.85 4.22 -51.93 -0.22 0.63 16 35 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.01 6.83 -51.93 -0.35 0.66 16 42 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 43 H 0.04 1.08 7.65 -51.93 -0.40 0.69 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.14 1.18 6.66 -52.49 -0.35 0.83 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -32.08 352.15 -9.42 -41.51 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.59 Total: 0.31 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.72 Total: 2.32 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.48 Total: -56.18 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.08 -9.42 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049391014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.952 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds