Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38357 * 120.34652 * 2 1 4 4 N 1.31924 * 121.08037 * 179.67845 * 3 2 1 5 5 C 1.31696 * 121.87672 * 0.62726 * 4 3 2 6 6 C 1.39523 * 120.56775 * 359.66346 * 5 4 3 7 7 C 1.47838 * 120.56018 * 180.02562 * 6 5 4 8 8 O 1.21551 * 119.99921 * 313.85662 * 7 6 5 9 9 N 1.34777 * 120.00266 * 133.86540 * 7 6 5 10 10 C 1.46807 * 119.57378 * 4.22555 * 9 7 6 11 11 C 1.53460 * 107.59032 * 232.06648 * 10 9 7 12 12 C 1.52741 * 108.43959 * 301.91488 * 11 10 9 13 13 C 1.53006 * 110.80399 * 63.76972 * 12 11 10 14 14 H 1.09006 * 111.38574 * 69.73907 * 13 12 11 15 15 C 1.45116 * 119.58071 * 183.96141 * 9 7 6 16 16 H 1.08999 * 109.96871 * 11.92919 * 15 9 7 17 17 C 1.53900 * 111.89925 * 248.65768 * 15 9 7 18 18 C 1.54566 * 102.55373 * 203.53909 * 17 15 9 19 19 N 1.47116 * 107.25294 * 21.71080 * 18 17 15 20 20 C 1.36936 * 125.77052 * 182.59744 * 19 18 17 21 21 H 1.07996 * 120.00800 * 184.45117 * 20 19 18 22 22 C 1.38821 * 119.99771 * 4.44839 * 20 19 18 23 23 N 1.31617 * 119.99648 * 352.31725 * 22 20 19 24 24 Si 1.86799 * 119.99919 * 172.31791 * 22 20 19 25 25 H 1.48502 * 109.47007 * 94.98701 * 24 22 20 26 26 H 1.48505 * 109.46933 * 214.98478 * 24 22 20 27 27 H 1.48496 * 109.47141 * 334.98397 * 24 22 20 28 28 C 1.38353 * 120.35023 * 180.27284 * 2 1 3 29 29 H 1.08997 * 109.47344 * 269.72610 * 1 2 3 30 30 H 1.09003 * 109.47420 * 29.72645 * 1 2 3 31 31 H 1.09004 * 109.47078 * 149.72868 * 1 2 3 32 32 H 1.08003 * 119.46054 * 359.96981 * 3 2 1 33 33 H 1.07999 * 119.71729 * 179.68240 * 5 4 3 34 34 H 1.09003 * 109.83292 * 351.58516 * 10 9 7 35 35 H 1.08998 * 109.83107 * 112.47466 * 10 9 7 36 36 H 1.08996 * 109.64800 * 61.59904 * 11 10 9 37 37 H 1.09001 * 109.64028 * 182.02223 * 11 10 9 38 38 H 1.09003 * 109.20885 * 184.11448 * 12 11 10 39 39 H 1.09002 * 109.20994 * 303.42864 * 12 11 10 40 40 H 1.09002 * 110.72625 * 85.28656 * 17 15 9 41 41 H 1.08997 * 110.96745 * 321.91052 * 17 15 9 42 42 H 1.09003 * 109.88766 * 262.29830 * 18 17 15 43 43 H 1.08998 * 109.88424 * 141.12259 * 18 17 15 44 44 H 0.96995 * 119.99881 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.85540 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2109 0.0063 5 6 4.2349 0.1016 0.0007 6 6 3.6054 -1.1435 -0.0053 7 6 4.4023 -2.3887 -0.0111 8 8 5.3444 -2.5038 -0.7706 9 7 4.0843 -3.3963 0.8256 10 6 2.8900 -3.2855 1.6722 11 6 3.3180 -3.5727 3.1176 12 6 3.9432 -4.9653 3.1688 13 6 5.2191 -5.0195 2.3261 14 1 6.0208 -4.4374 2.7808 15 6 4.9234 -4.5793 0.8739 16 1 5.8568 -4.3955 0.3418 17 6 4.2079 -5.8145 0.2988 18 6 4.9570 -6.9834 0.9782 19 7 5.5928 -6.4475 2.1918 20 6 6.3944 -7.1493 3.0520 21 1 6.7557 -6.6821 3.9562 22 6 6.7426 -8.4614 2.7619 23 7 6.1844 -9.0805 1.7434 24 14 8.0034 -9.3482 3.8171 25 1 7.3057 -10.1381 4.8633 26 1 8.8097 -10.2587 2.9648 27 1 8.8972 -8.3530 4.4619 28 6 2.2060 -1.1939 -0.0057 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3633 -0.8876 -0.5181 32 1 1.6628 2.1275 -0.0005 33 1 5.3135 0.1562 0.0010 34 1 2.4786 -2.2786 1.6014 35 1 2.1431 -4.0132 1.3550 36 1 4.0496 -2.8307 3.4375 37 1 2.4471 -3.5344 3.7720 38 1 4.1853 -5.2120 4.2026 39 1 3.2287 -5.6936 2.7850 40 1 4.3235 -5.8579 -0.7842 41 1 3.1534 -5.8180 0.5745 42 1 5.7177 -7.3778 0.3044 43 1 4.2517 -7.7702 1.2457 44 1 6.4280 -9.9972 1.5404 45 1 1.6858 -2.1404 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049391014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = 17.741349 kcal Electronic energy + Delta-G solvation = -26992.968825 eV Core-core repulsion = 23396.422657 eV Total energy + Delta-G solvation = -3596.546168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18921 -40.88125 -39.33519 -36.92249 -34.72985 -34.29915 -33.80902 -33.05499 -30.83018 -29.79901 -28.18017 -26.89822 -26.14518 -24.85152 -24.00001 -23.16982 -22.00317 -21.38285 -19.66104 -18.86254 -18.53356 -17.99988 -17.61582 -17.14566 -16.79431 -16.25623 -15.89639 -15.52648 -15.24778 -15.00796 -14.97957 -14.54098 -14.43455 -14.16585 -14.05038 -13.74679 -13.58834 -13.50207 -13.40874 -13.12857 -12.81398 -12.76763 -12.65693 -12.37959 -12.32682 -12.09932 -12.00451 -11.72141 -11.58931 -11.26422 -11.22266 -10.71851 -10.66126 -10.41912 -9.95955 -9.68720 -8.90966 -7.87219 -5.21052 -0.27669 0.14311 1.43802 1.46568 1.51238 1.55472 1.82227 2.48360 2.69515 3.19591 3.31667 3.49854 3.53493 3.75491 3.80217 3.86736 3.87886 3.93188 4.00549 4.07079 4.09763 4.25861 4.32473 4.51521 4.53674 4.57490 4.62912 4.74282 4.78495 4.80754 4.92225 4.93581 4.97476 5.03256 5.14802 5.22792 5.28887 5.31892 5.38525 5.51425 5.56164 5.61953 5.64610 5.71903 6.16300 6.27548 6.85601 6.96907 7.07519 7.73494 8.39146 9.23504 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.003240 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164180 B = 8639.650634 C = 8810.790754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C 0.112 3.888 4 N -0.501 5.501 5 C 0.128 3.872 6 C -0.179 4.179 7 C 0.557 3.443 8 O -0.579 6.579 9 N -0.580 5.580 10 C 0.091 3.909 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.151 3.849 14 H 0.049 0.951 15 C 0.146 3.854 16 H 0.069 0.931 17 C -0.132 4.132 18 C 0.191 3.809 19 N -0.618 5.618 20 C -0.238 4.238 21 H 0.081 0.919 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.974 3.026 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.271 1.271 28 C -0.050 4.050 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.191 0.809 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.014 0.986 44 H 0.247 0.753 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.123 19.954 -0.868 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.045 4.045 4 N -0.209 5.209 5 C -0.029 4.029 6 C -0.184 4.184 7 C 0.346 3.654 8 O -0.460 6.460 9 N -0.309 5.309 10 C -0.029 4.029 11 C -0.161 4.161 12 C -0.159 4.159 13 C 0.044 3.956 14 H 0.067 0.933 15 C 0.041 3.959 16 H 0.088 0.912 17 C -0.171 4.171 18 C 0.066 3.934 19 N -0.343 5.343 20 C -0.367 4.367 21 H 0.099 0.901 22 C -0.256 4.256 23 N -0.597 5.597 24 Si 0.803 3.197 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.196 1.196 28 C -0.075 4.075 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.207 0.793 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.028 0.972 43 H 0.032 0.968 44 H 0.056 0.944 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.086 20.461 -1.217 26.056 hybrid contribution 1.095 -2.112 0.304 2.398 sum -14.991 18.350 -0.913 23.712 Atomic orbital electron populations 1.20852 0.86766 1.04707 1.04276 1.21237 0.99671 0.92549 0.99624 1.23523 0.89200 0.99517 0.92243 1.67787 1.09576 1.30349 1.13193 1.22761 1.00588 0.86415 0.93167 1.20718 0.95650 0.93748 1.08321 1.18687 0.83490 0.83490 0.79740 1.90781 1.31869 1.82063 1.41260 1.47539 1.27350 1.16154 1.39900 1.22598 0.86117 1.04523 0.89705 1.21884 1.01851 0.95901 0.96474 1.21911 0.96985 0.97371 0.99624 1.21637 0.95633 0.85121 0.93203 0.93323 1.21280 0.93580 0.84229 0.96846 0.91243 1.22819 1.00191 0.94398 0.99676 1.20862 0.93452 0.92132 0.86961 1.44953 1.56940 1.05914 1.26531 1.19370 1.21511 0.94642 1.01128 0.90109 1.25615 1.02164 0.97911 0.99938 1.70172 1.45922 1.11689 1.31908 0.85127 0.78943 0.78171 0.77489 1.21152 1.22254 1.19562 1.21997 0.91202 1.00687 0.93657 0.88951 0.89338 0.90262 0.79259 0.83091 0.86471 0.88994 0.91923 0.87635 0.93290 0.92593 0.91482 0.89483 0.97216 0.96778 0.94392 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.03 71.23 0.71 0.26 16 2 C -0.13 -1.48 5.89 -19.81 -0.12 -1.60 16 3 C 0.11 1.57 10.85 84.71 0.92 2.49 16 4 N -0.50 -10.68 10.35 -194.75 -2.01 -12.69 16 5 C 0.13 3.07 10.87 85.02 0.92 4.00 16 6 C -0.18 -4.18 5.13 -19.99 -0.10 -4.28 16 7 C 0.56 17.26 7.27 86.78 0.63 17.89 16 8 O -0.58 -23.32 16.35 -3.88 -0.06 -23.39 16 9 N -0.58 -16.79 2.74 -798.02 -2.18 -18.98 16 10 C 0.09 1.80 4.89 86.48 0.42 2.22 16 11 C -0.12 -2.68 6.11 30.66 0.19 -2.49 16 12 C -0.12 -3.88 5.10 30.51 0.16 -3.73 16 13 C 0.15 6.14 3.61 45.21 0.16 6.30 16 14 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 15 C 0.15 5.49 3.07 46.10 0.14 5.64 16 16 H 0.07 3.09 6.99 -2.39 -0.02 3.07 16 17 C -0.13 -5.01 6.05 31.43 0.19 -4.82 16 18 C 0.19 9.56 5.20 86.79 0.45 10.01 16 19 N -0.62 -31.66 2.91 -666.31 -1.94 -33.60 16 20 C -0.24 -13.34 10.28 84.04 0.86 -12.48 16 21 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 22 C -0.06 -3.62 5.47 84.86 0.46 -3.15 16 23 N -0.95 -57.44 10.39 21.65 0.22 -57.21 16 24 Si 0.97 46.28 29.56 68.60 2.03 48.31 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 C -0.05 -0.77 7.10 22.73 0.16 -0.61 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.15 8.09 -2.39 -0.02 0.13 16 31 H 0.08 0.28 8.09 -2.39 -0.02 0.26 16 32 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.12 1.71 4.22 -2.39 -0.01 1.70 16 35 H 0.09 1.54 7.53 -2.39 -0.02 1.53 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.92 7.13 -2.39 -0.02 1.90 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 2.83 6.83 -2.39 -0.02 2.81 16 42 H 0.01 0.55 7.27 -2.39 -0.02 0.53 16 43 H 0.01 0.77 7.65 -2.39 -0.02 0.75 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.16 1.87 6.66 -2.91 -0.02 1.85 16 Total: -1.00 -75.51 352.15 3.21 -72.30 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.99 Total: 9.60 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.17 Total: 15.66 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.91 Total: -122.48 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.51 3.21 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049391014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.040 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds