Wall clock time and date at job start Tue Mar 31 2020 11:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38398 * 120.85235 * 2 1 4 4 C 1.38316 * 119.30437 * 179.97438 * 3 2 1 5 5 N 1.31954 * 121.07941 * 359.97438 * 4 3 2 6 6 C 1.31669 * 121.87726 * 359.72499 * 5 4 3 7 7 C 1.39559 * 120.56574 * 0.54067 * 6 5 4 8 8 C 1.47846 * 120.55530 * 179.74844 * 7 6 5 9 9 O 1.21552 * 119.99880 * 233.70249 * 8 7 6 10 10 N 1.34771 * 119.99861 * 53.71470 * 8 7 6 11 11 C 1.45729 * 117.76371 * 355.92267 * 10 8 7 12 12 C 1.53051 * 109.55794 * 141.13175 * 11 10 8 13 13 C 1.52947 * 108.48916 * 53.81819 * 12 11 10 14 14 C 1.52934 * 109.73849 * 294.03920 * 13 12 11 15 15 H 1.08998 * 110.49945 * 293.85149 * 14 13 12 16 16 C 1.44190 * 117.75826 * 175.95191 * 10 8 7 17 17 H 1.09004 * 109.22444 * 332.58324 * 16 10 8 18 18 C 1.54069 * 111.76994 * 93.48525 * 16 10 8 19 19 C 1.54047 * 103.74959 * 153.25022 * 18 16 10 20 20 N 1.46893 * 107.70777 * 342.87349 * 19 18 16 21 21 C 1.36935 * 125.57992 * 177.07999 * 20 19 18 22 22 H 1.08002 * 119.99731 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00345 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00321 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47129 * 89.99755 * 25 23 21 27 27 H 1.48495 * 109.47284 * 209.99929 * 25 23 21 28 28 H 1.48503 * 109.47129 * 330.00127 * 25 23 21 29 29 H 1.08997 * 109.47071 * 274.42766 * 1 2 3 30 30 H 1.09005 * 109.46988 * 34.42822 * 1 2 3 31 31 H 1.08999 * 109.46637 * 154.42855 * 1 2 3 32 32 H 1.07996 * 120.35324 * 359.95471 * 3 2 1 33 33 H 1.07998 * 119.45763 * 180.02562 * 4 3 2 34 34 H 1.08003 * 119.71587 * 180.26583 * 6 5 4 35 35 H 1.09003 * 109.45528 * 21.11194 * 11 10 8 36 36 H 1.08998 * 109.44778 * 261.15411 * 11 10 8 37 37 H 1.08993 * 109.63688 * 294.11848 * 12 11 10 38 38 H 1.09003 * 109.80289 * 173.61380 * 12 11 10 39 39 H 1.09000 * 109.41601 * 54.09930 * 13 12 11 40 40 H 1.08994 * 109.42409 * 173.96855 * 13 12 11 41 41 H 1.09001 * 110.56721 * 271.81963 * 18 16 10 42 42 H 1.09000 * 110.56344 * 34.68312 * 18 16 10 43 43 H 1.08996 * 109.81516 * 102.41963 * 19 18 16 44 44 H 1.08999 * 109.81312 * 223.25759 * 19 18 16 45 45 H 0.96998 * 120.00286 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1508 0.0005 5 7 4.2498 0.0027 0.0016 6 6 3.6197 -1.1535 0.0075 7 6 2.2250 -1.2016 0.0016 8 6 1.5177 -2.4999 0.0026 9 8 0.6835 -2.7382 -0.8486 10 7 1.7979 -3.4191 0.9476 11 6 2.8690 -3.1198 1.8893 12 6 2.4768 -3.6117 3.2846 13 6 2.0974 -5.0903 3.1886 14 6 0.8295 -5.2446 2.3475 15 1 -0.0222 -4.7902 2.8538 16 6 1.0177 -4.6316 0.9572 17 1 0.0353 -4.4297 0.5302 18 6 1.6980 -5.7552 0.1520 19 6 1.1678 -7.0460 0.8046 20 7 0.6104 -6.6875 2.1155 21 6 -0.0098 -7.5493 2.9803 22 1 -0.3873 -7.1874 3.9252 23 6 -0.1531 -8.8880 2.6425 24 7 0.3065 -9.3289 1.4907 25 14 -0.9984 -10.0638 3.8225 26 1 -2.4550 -10.0918 3.5347 27 1 -0.4340 -11.4267 3.6524 28 1 -0.7784 -9.6075 5.2184 29 1 -0.3633 0.0793 1.0246 30 1 -0.3633 0.8477 -0.5810 31 1 -0.3632 -0.9270 -0.4436 32 1 1.6966 2.1346 -0.0007 33 1 4.1558 2.0764 0.0010 34 1 4.1872 -2.0724 0.0125 35 1 3.0369 -2.0432 1.9180 36 1 3.7828 -3.6215 1.5710 37 1 1.6249 -3.0379 3.6492 38 1 3.3178 -3.4931 3.9679 39 1 2.9118 -5.6438 2.7213 40 1 1.9187 -5.4843 4.1891 41 1 1.4036 -5.7072 -0.8964 42 1 2.7819 -5.6939 0.2496 43 1 0.3894 -7.4833 0.1793 44 1 1.9834 -7.7580 0.9310 45 1 0.2061 -10.2643 1.2544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049396940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:48 Heat of formation + Delta-G solvation = 14.690843 kcal Electronic energy + Delta-G solvation = -27243.470815 eV Core-core repulsion = 23646.792367 eV Total energy + Delta-G solvation = -3596.678448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29098 -40.84067 -39.28098 -36.99583 -34.89581 -34.34434 -33.98583 -32.53683 -30.81668 -29.93881 -28.90972 -26.68998 -26.15879 -24.88708 -23.72369 -23.03506 -22.13894 -21.55302 -19.64520 -18.91534 -18.67528 -17.64899 -17.41098 -17.24801 -16.80557 -16.12834 -15.98898 -15.63184 -15.26528 -15.04196 -15.03412 -14.97183 -14.34743 -14.26995 -13.90506 -13.82176 -13.67325 -13.64199 -13.36106 -13.14513 -12.86955 -12.79406 -12.65771 -12.37590 -12.31119 -12.06074 -11.96747 -11.67189 -11.59657 -11.25656 -11.16623 -10.70920 -10.52542 -10.42311 -10.08238 -9.71304 -8.92591 -7.84516 -5.21508 -0.21935 0.18002 1.45555 1.47872 1.49182 1.56395 1.84212 2.49318 2.72474 3.20947 3.33645 3.51795 3.53730 3.65671 3.77700 3.82026 3.86520 3.94214 4.04112 4.09336 4.10085 4.30358 4.42406 4.52366 4.54859 4.56728 4.61628 4.65650 4.69694 4.76131 4.80454 4.86217 4.94043 5.00670 5.13215 5.15385 5.28787 5.31989 5.40628 5.53218 5.59433 5.61437 5.63468 5.72495 6.17550 6.24300 6.87480 6.99687 7.08238 7.74647 8.38974 9.25393 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.003393 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.671422 B = 8249.148818 C = 8426.933388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 C -0.168 4.168 4 C 0.118 3.882 5 N -0.505 5.505 6 C 0.134 3.866 7 C -0.196 4.196 8 C 0.557 3.443 9 O -0.569 6.569 10 N -0.576 5.576 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.157 3.843 15 H 0.050 0.950 16 C 0.155 3.845 17 H 0.066 0.934 18 C -0.135 4.135 19 C 0.193 3.807 20 N -0.615 5.615 21 C -0.236 4.236 22 H 0.085 0.915 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.175 0.825 33 H 0.195 0.805 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 24.162 0.676 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 C -0.187 4.187 4 C -0.037 4.037 5 N -0.215 5.215 6 C -0.024 4.024 7 C -0.201 4.201 8 C 0.346 3.654 9 O -0.448 6.448 10 N -0.306 5.306 11 C -0.020 4.020 12 C -0.158 4.158 13 C -0.161 4.161 14 C 0.050 3.950 15 H 0.068 0.932 16 C 0.049 3.951 17 H 0.084 0.916 18 C -0.174 4.174 19 C 0.067 3.933 20 N -0.340 5.340 21 C -0.364 4.364 22 H 0.103 0.897 23 C -0.259 4.259 24 N -0.601 5.601 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.222 1.222 28 H -0.191 1.191 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.193 0.807 33 H 0.212 0.788 34 H 0.184 0.816 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.875 23.784 0.286 25.055 hybrid contribution -1.603 -1.667 0.164 2.318 sum 6.272 22.117 0.450 22.993 Atomic orbital electron populations 1.21067 0.89547 1.04504 1.03913 1.20589 0.97525 0.91767 0.91443 1.22349 0.95555 0.98855 1.01930 1.23577 0.92227 0.96914 0.91013 1.67803 1.41075 0.98706 1.13877 1.23093 0.89536 0.97433 0.92335 1.20696 0.96120 0.93228 1.10078 1.18705 0.81771 0.84019 0.80928 1.90751 1.35810 1.79905 1.38366 1.47030 1.35594 1.16765 1.31172 1.21958 0.89016 1.02171 0.88828 1.21797 1.02999 0.94817 0.96201 1.21921 0.97648 0.96566 0.99919 1.21080 0.96606 0.84362 0.92929 0.93157 1.20626 0.94207 0.83709 0.96544 0.91605 1.22790 1.00432 0.95228 0.98962 1.20708 0.95019 0.91864 0.85676 1.44763 1.67678 1.03721 1.17803 1.19396 1.29392 0.89394 0.98268 0.89719 1.25652 1.02367 0.98758 0.99091 1.70195 1.52194 1.14336 1.23354 0.85073 0.77657 0.77894 0.78665 1.21553 1.22231 1.19060 0.89297 0.88234 0.92201 0.80726 0.78829 0.81552 0.87948 0.90109 0.91212 0.87722 0.93106 0.92733 0.91957 0.90645 0.97019 0.97119 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.75 71.24 0.69 -1.81 16 2 C 0.00 -0.10 5.95 -19.40 -0.12 -0.21 16 3 C -0.17 -2.12 9.82 22.33 0.22 -1.90 16 4 C 0.12 1.54 11.17 84.69 0.95 2.49 16 5 N -0.51 -9.46 10.35 -194.75 -2.01 -11.48 16 6 C 0.13 2.72 8.74 85.04 0.74 3.47 16 7 C -0.20 -4.59 4.65 -19.99 -0.09 -4.68 16 8 C 0.56 17.01 6.54 86.79 0.57 17.58 16 9 O -0.57 -21.85 14.51 -3.88 -0.06 -21.91 16 10 N -0.58 -17.04 2.80 -806.12 -2.26 -19.29 16 11 C 0.10 2.23 4.99 86.54 0.43 2.66 16 12 C -0.12 -2.72 6.10 30.59 0.19 -2.53 16 13 C -0.12 -4.01 5.31 30.55 0.16 -3.85 16 14 C 0.16 6.35 3.29 44.76 0.15 6.50 16 15 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 16 C 0.15 5.84 2.68 45.82 0.12 5.96 16 17 H 0.07 2.83 7.16 -2.38 -0.02 2.81 16 18 C -0.13 -5.48 6.45 31.31 0.20 -5.28 16 19 C 0.19 9.91 5.39 86.66 0.47 10.38 16 20 N -0.61 -31.57 2.94 -671.92 -1.97 -33.55 16 21 C -0.24 -13.12 10.28 84.03 0.86 -12.26 16 22 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 23 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 24 N -0.95 -58.03 10.29 21.65 0.22 -57.80 16 25 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.32 8.13 -2.38 -0.02 1.30 16 31 H 0.06 1.57 5.72 -2.39 -0.01 1.56 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 34 H 0.17 3.04 7.10 -2.91 -0.02 3.02 16 35 H 0.10 1.86 5.18 -2.39 -0.01 1.84 16 36 H 0.08 1.60 7.90 -2.39 -0.02 1.58 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.01 0.68 7.25 -2.39 -0.02 0.66 16 44 H 0.01 0.60 7.60 -2.39 -0.02 0.58 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -73.36 351.63 2.95 -70.42 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.99 Total: 12.38 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.01 Total: 13.21 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.02 Total: -122.12 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.36 2.95 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049396940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.106 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds