Wall clock time and date at job start Tue Mar 31 2020 11:28:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38402 * 120.85482 * 2 1
4 4 C 1.38308 * 119.30421 * 180.25538 * 3 2 1
5 5 N 1.31963 * 121.07909 * 359.75515 * 4 3 2
6 6 C 1.31661 * 121.88120 * 359.97438 * 5 4 3
7 7 C 1.39561 * 120.56643 * 0.02562 * 6 5 4
8 8 C 1.47835 * 120.56198 * 179.97438 * 7 6 5
9 9 O 1.21557 * 120.00344 * 125.85033 * 8 7 6
10 10 N 1.34783 * 119.99938 * 305.85947 * 8 7 6
11 11 C 1.46795 * 119.57327 * 354.27196 * 10 8 7
12 12 C 1.53459 * 107.60324 * 232.06552 * 11 10 8
13 13 C 1.52743 * 108.43800 * 301.92779 * 12 11 10
14 14 C 1.53012 * 110.79705 * 63.77536 * 13 12 11
15 15 H 1.08991 * 111.38663 * 69.70980 * 14 13 12
16 16 C 1.45113 * 119.57431 * 174.30175 * 10 8 7
17 17 H 1.09001 * 109.97540 * 11.92418 * 16 10 8
18 18 C 1.54414 * 111.61082 * 248.63561 * 16 10 8
19 19 C 1.54571 * 102.45342 * 203.41747 * 18 16 10
20 20 N 1.47120 * 107.24700 * 21.67913 * 19 18 16
21 21 C 1.36937 * 125.76568 * 182.85769 * 20 19 18
22 22 H 1.07997 * 120.00312 * 179.68820 * 21 20 19
23 23 C 1.38813 * 120.00190 * 359.68904 * 21 20 19
24 24 N 1.31622 * 119.99742 * 359.97438 * 23 21 20
25 25 Si 1.86799 * 120.00402 * 180.02562 * 23 21 20
26 26 H 1.48506 * 109.46939 * 359.97438 * 25 23 21
27 27 H 1.48500 * 109.47199 * 119.99907 * 25 23 21
28 28 H 1.48500 * 109.47135 * 239.99682 * 25 23 21
29 29 H 1.08997 * 109.47334 * 275.16456 * 1 2 3
30 30 H 1.09000 * 109.46805 * 35.17074 * 1 2 3
31 31 H 1.09001 * 109.46441 * 155.16489 * 1 2 3
32 32 H 1.07999 * 120.34655 * 359.97438 * 3 2 1
33 33 H 1.08000 * 119.46043 * 179.73970 * 4 3 2
34 34 H 1.07996 * 119.71572 * 180.02562 * 6 5 4
35 35 H 1.08998 * 109.83428 * 112.54030 * 11 10 8
36 36 H 1.09004 * 109.88841 * 351.62210 * 11 10 8
37 37 H 1.08999 * 109.64705 * 182.24375 * 12 11 10
38 38 H 1.09003 * 109.81821 * 61.71442 * 12 11 10
39 39 H 1.08996 * 109.21141 * 303.43394 * 13 12 11
40 40 H 1.08997 * 109.20959 * 184.11278 * 13 12 11
41 41 H 1.09010 * 110.81501 * 321.65959 * 18 16 10
42 42 H 1.08997 * 110.81571 * 85.18114 * 18 16 10
43 43 H 1.08992 * 109.89099 * 262.26514 * 19 18 16
44 44 H 1.09005 * 109.88452 * 141.08465 * 19 18 16
45 45 H 0.97001 * 119.99853 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5994 1.1507 -0.0054
5 7 4.2498 0.0025 -0.0057
6 6 3.6198 -1.1536 -0.0004
7 6 2.2250 -1.2017 0.0052
8 6 1.5177 -2.4998 0.0106
9 8 0.6888 -2.7369 0.8676
10 7 1.7919 -3.4206 -0.9347
11 6 2.6994 -3.0793 -2.0369
12 6 1.9845 -3.4239 -3.3503
13 6 1.6235 -4.9079 -3.3289
14 6 0.6266 -5.2084 -2.2076
15 1 -0.3525 -4.7799 -2.4210
16 6 1.1858 -4.7364 -0.8501
17 1 0.3937 -4.7340 -0.1013
18 6 2.2333 -5.8258 -0.5337
19 6 1.5583 -7.1054 -1.0780
20 7 0.5570 -6.6824 -2.0694
21 6 -0.2990 -7.5101 -2.7458
22 1 -1.0033 -7.0973 -3.4528
23 6 -0.2613 -8.8796 -2.5228
24 7 0.5975 -9.3827 -1.6615
25 14 -1.4284 -10.0088 -3.4459
26 1 -2.2871 -9.2015 -4.3494
27 1 -0.6445 -10.9830 -4.2470
28 1 -2.2818 -10.7395 -2.4749
29 1 -0.3634 0.0925 1.0234
30 1 -0.3633 0.8401 -0.5920
31 1 -0.3632 -0.9327 -0.4317
32 1 1.6966 2.1346 -0.0004
33 1 4.1558 2.0764 -0.0097
34 1 4.1872 -2.0725 -0.0004
35 1 3.6182 -3.6597 -1.9527
36 1 2.9311 -2.0145 -2.0103
37 1 2.6462 -3.2200 -4.1922
38 1 1.0771 -2.8274 -3.4447
39 1 2.5283 -5.4949 -3.1713
40 1 1.1804 -5.1831 -4.2860
41 1 3.1683 -5.6282 -1.0582
42 1 2.3996 -5.9029 0.5407
43 1 1.0707 -7.6422 -0.2644
44 1 2.3031 -7.7443 -1.5527
45 1 0.6235 -10.3398 -1.5053
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049396942.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:52
Heat of formation + Delta-G solvation = 32.776523 kcal
Electronic energy + Delta-G solvation = -27239.787791 eV
Core-core repulsion = 23643.893597 eV
Total energy + Delta-G solvation = -3595.894194 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.10354 -39.71750 -37.90535 -35.34815 -34.10918 -32.57268 -32.38747 -31.44036
-29.06464 -28.38776 -27.98113 -25.39173 -24.32704 -23.84242 -22.62968 -21.94064
-20.53270 -19.99557 -18.31984 -17.57016 -16.92783 -16.80651 -16.55978 -16.01337
-14.88107 -14.77813 -14.65872 -14.27830 -14.24715 -13.92169 -13.77428 -13.42326
-13.08220 -13.02214 -12.95355 -12.86066 -12.38829 -12.14099 -11.98023 -11.91235
-11.41094 -11.06043 -11.01463 -10.81837 -10.67294 -10.55893 -10.31630 -10.06752
-9.96503 -9.75939 -9.65722 -9.64109 -9.52837 -9.27116 -8.64473 -8.34673
-6.88074 -5.72818 -3.07036 0.59080 0.93443 2.65341 3.03736 3.39139
3.44772 3.47097 3.51130 4.10616 4.36563 4.42515 4.46782 4.49234
4.78316 4.91759 5.09997 5.14074 5.22844 5.26013 5.33478 5.39201
5.41218 5.46489 5.55507 5.59292 5.61488 5.67647 5.82916 5.84666
5.95915 6.02271 6.07790 6.17437 6.28151 6.32119 6.34252 6.47340
6.55939 6.70105 6.92350 7.02792 7.48659 7.54140 7.59654 7.63172
7.80765 8.18396 8.23463 9.18815 9.78431 10.44026 11.38438
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.027788 B = 0.003386 C = 0.003347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1007.395813 B = 8266.708390 C = 8364.584107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.004 3.996
3 C -0.179 4.179
4 C 0.113 3.887
5 N -0.489 5.489
6 C 0.136 3.864
7 C -0.174 4.174
8 C 0.559 3.441
9 O -0.530 6.530
10 N -0.584 5.584
11 C 0.104 3.896
12 C -0.132 4.132
13 C -0.130 4.130
14 C 0.157 3.843
15 H 0.060 0.940
16 C 0.130 3.870
17 H 0.104 0.896
18 C -0.152 4.152
19 C 0.181 3.819
20 N -0.598 5.598
21 C -0.226 4.226
22 H 0.078 0.922
23 C -0.007 4.007
24 N -0.920 5.920
25 Si 0.911 3.089
26 H -0.280 1.280
27 H -0.291 1.291
28 H -0.291 1.291
29 H 0.085 0.915
30 H 0.073 0.927
31 H 0.076 0.924
32 H 0.140 0.860
33 H 0.159 0.841
34 H 0.161 0.839
35 H 0.072 0.928
36 H 0.078 0.922
37 H 0.069 0.931
38 H 0.062 0.938
39 H 0.064 0.936
40 H 0.061 0.939
41 H 0.060 0.940
42 H 0.062 0.938
43 H 0.052 0.948
44 H 0.042 0.958
45 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.814 20.721 0.703 21.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.005 4.005
3 C -0.199 4.199
4 C -0.043 4.043
5 N -0.198 5.198
6 C -0.022 4.022
7 C -0.180 4.180
8 C 0.346 3.654
9 O -0.407 6.407
10 N -0.315 5.315
11 C -0.018 4.018
12 C -0.171 4.171
13 C -0.170 4.170
14 C 0.048 3.952
15 H 0.078 0.922
16 C 0.026 3.974
17 H 0.121 0.879
18 C -0.191 4.191
19 C 0.056 3.944
20 N -0.323 5.323
21 C -0.355 4.355
22 H 0.096 0.904
23 C -0.203 4.203
24 N -0.568 5.568
25 Si 0.742 3.258
26 H -0.205 1.205
27 H -0.218 1.218
28 H -0.218 1.218
29 H 0.104 0.896
30 H 0.092 0.908
31 H 0.094 0.906
32 H 0.158 0.842
33 H 0.176 0.824
34 H 0.178 0.822
35 H 0.091 0.909
36 H 0.097 0.903
37 H 0.088 0.912
38 H 0.081 0.919
39 H 0.083 0.917
40 H 0.079 0.921
41 H 0.079 0.921
42 H 0.080 0.920
43 H 0.070 0.930
44 H 0.060 0.940
45 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 6.215 20.303 1.132 21.264
hybrid contribution -1.325 -0.698 -0.523 1.586
sum 4.890 19.605 0.610 20.215
Atomic orbital electron populations
1.20901 0.89491 1.03665 1.03612 1.20385 0.97164 0.91448 0.91484
1.21998 0.95583 0.98514 1.03822 1.22912 0.91712 0.96417 0.93275
1.67721 1.40706 0.98239 1.13149 1.22986 0.90138 0.96654 0.92428
1.20945 0.95627 0.94437 1.06959 1.18138 0.82164 0.83234 0.81876
1.90799 1.33254 1.79079 1.37583 1.47588 1.46205 1.13135 1.24525
1.21937 0.92939 1.00452 0.86517 1.21914 1.00336 0.98819 0.95988
1.22130 1.00937 0.93146 1.00801 1.21345 0.96003 0.86646 0.91207
0.92233 1.21842 0.96223 0.79471 0.99877 0.87852 1.23134 0.98004
0.97513 1.00464 1.21178 0.90881 0.90173 0.92197 1.44726 1.41121
0.99154 1.47261 1.19074 1.11544 0.87607 1.17235 0.90389 1.24797
0.99354 0.96686 0.99496 1.69965 1.37933 1.11500 1.37374 0.86052
0.80044 0.80832 0.78861 1.20531 1.21792 1.21764 0.89623 0.90815
0.90550 0.84218 0.82385 0.82180 0.90932 0.90333 0.91244 0.91878
0.91746 0.92060 0.92139 0.91952 0.93003 0.93958 0.93775
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.21 9.37 36.01 0.34 -0.87 16
2 C 0.00 0.04 5.95 -103.91 -0.62 -0.58 16
3 C -0.18 -1.51 9.82 -39.50 -0.39 -1.90 16
4 C 0.11 0.98 11.17 -17.47 -0.20 0.79 16
5 N -0.49 -5.43 10.35 -12.91 -0.13 -5.56 16
6 C 0.14 1.56 8.96 -17.13 -0.15 1.41 16
7 C -0.17 -2.19 4.54 -104.82 -0.48 -2.67 16
8 C 0.56 8.63 6.12 -12.33 -0.08 8.55 16
9 O -0.53 -9.98 15.42 5.32 0.08 -9.90 16
10 N -0.58 -8.77 2.73 -166.13 -0.45 -9.23 16
11 C 0.10 1.27 5.24 -3.64 -0.02 1.26 16
12 C -0.13 -1.70 6.11 -26.63 -0.16 -1.86 16
13 C -0.13 -2.21 5.10 -26.86 -0.14 -2.35 16
14 C 0.16 3.11 3.60 -66.35 -0.24 2.88 16
15 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
16 C 0.13 2.38 3.12 -67.30 -0.21 2.17 16
17 H 0.10 2.15 6.93 -51.93 -0.36 1.79 16
18 C -0.15 -2.85 6.08 -25.16 -0.15 -3.00 16
19 C 0.18 4.30 5.19 -2.88 -0.01 4.28 16
20 N -0.60 -14.71 2.91 -162.19 -0.47 -15.19 16
21 C -0.23 -6.15 10.29 -15.06 -0.16 -6.31 16
22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16
23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16
24 N -0.92 -26.68 10.33 55.49 0.57 -26.11 16
25 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16
26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16
31 H 0.08 0.94 6.72 -51.93 -0.35 0.59 16
32 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16
33 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16
34 H 0.16 1.66 7.75 -52.49 -0.41 1.25 16
35 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16
36 H 0.08 0.84 5.37 -51.93 -0.28 0.56 16
37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16
40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
41 H 0.06 1.04 6.81 -51.92 -0.35 0.68 16
42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
43 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16
44 H 0.04 1.10 7.60 -51.93 -0.39 0.71 16
45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
LS Contribution 351.12 15.07 5.29 5.29
Total: -1.00 -31.68 351.12 -9.52 -41.21
By element:
Atomic # 1 Polarization: 7.69 SS G_CDS: -6.63 Total: 1.06 kcal
Atomic # 6 Polarization: 4.26 SS G_CDS: -2.75 Total: 1.51 kcal
Atomic # 7 Polarization: -55.60 SS G_CDS: -0.49 Total: -56.08 kcal
Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -31.68 -9.52 -41.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049396942.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.985 kcal
(2) G-P(sol) polarization free energy of solvation -31.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.300 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds