Wall clock time and date at job start Tue Mar 31 2020 11:28:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38402 * 120.85482 * 2 1
4 4 C 1.38308 * 119.30421 * 180.25538 * 3 2 1
5 5 N 1.31963 * 121.07909 * 359.75515 * 4 3 2
6 6 C 1.31661 * 121.88120 * 359.97438 * 5 4 3
7 7 C 1.39561 * 120.56643 * 0.02562 * 6 5 4
8 8 C 1.47835 * 120.56198 * 179.97438 * 7 6 5
9 9 O 1.21557 * 120.00344 * 125.85033 * 8 7 6
10 10 N 1.34783 * 119.99938 * 305.85947 * 8 7 6
11 11 C 1.46795 * 119.57327 * 354.27196 * 10 8 7
12 12 C 1.53459 * 107.60324 * 232.06552 * 11 10 8
13 13 C 1.52743 * 108.43800 * 301.92779 * 12 11 10
14 14 C 1.53012 * 110.79705 * 63.77536 * 13 12 11
15 15 H 1.08991 * 111.38663 * 69.70980 * 14 13 12
16 16 C 1.45113 * 119.57431 * 174.30175 * 10 8 7
17 17 H 1.09001 * 109.97540 * 11.92418 * 16 10 8
18 18 C 1.54414 * 111.61082 * 248.63561 * 16 10 8
19 19 C 1.54571 * 102.45342 * 203.41747 * 18 16 10
20 20 N 1.47120 * 107.24700 * 21.67913 * 19 18 16
21 21 C 1.36937 * 125.76568 * 182.85769 * 20 19 18
22 22 H 1.07997 * 120.00312 * 179.68820 * 21 20 19
23 23 C 1.38813 * 120.00190 * 359.68904 * 21 20 19
24 24 N 1.31622 * 119.99742 * 359.97438 * 23 21 20
25 25 Si 1.86799 * 120.00402 * 180.02562 * 23 21 20
26 26 H 1.48506 * 109.46939 * 359.97438 * 25 23 21
27 27 H 1.48500 * 109.47199 * 119.99907 * 25 23 21
28 28 H 1.48500 * 109.47135 * 239.99682 * 25 23 21
29 29 H 1.08997 * 109.47334 * 275.16456 * 1 2 3
30 30 H 1.09000 * 109.46805 * 35.17074 * 1 2 3
31 31 H 1.09001 * 109.46441 * 155.16489 * 1 2 3
32 32 H 1.07999 * 120.34655 * 359.97438 * 3 2 1
33 33 H 1.08000 * 119.46043 * 179.73970 * 4 3 2
34 34 H 1.07996 * 119.71572 * 180.02562 * 6 5 4
35 35 H 1.08998 * 109.83428 * 112.54030 * 11 10 8
36 36 H 1.09004 * 109.88841 * 351.62210 * 11 10 8
37 37 H 1.08999 * 109.64705 * 182.24375 * 12 11 10
38 38 H 1.09003 * 109.81821 * 61.71442 * 12 11 10
39 39 H 1.08996 * 109.21141 * 303.43394 * 13 12 11
40 40 H 1.08997 * 109.20959 * 184.11278 * 13 12 11
41 41 H 1.09010 * 110.81501 * 321.65959 * 18 16 10
42 42 H 1.08997 * 110.81571 * 85.18114 * 18 16 10
43 43 H 1.08992 * 109.89099 * 262.26514 * 19 18 16
44 44 H 1.09005 * 109.88452 * 141.08465 * 19 18 16
45 45 H 0.97001 * 119.99853 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5994 1.1507 -0.0054
5 7 4.2498 0.0025 -0.0057
6 6 3.6198 -1.1536 -0.0004
7 6 2.2250 -1.2017 0.0052
8 6 1.5177 -2.4998 0.0106
9 8 0.6888 -2.7369 0.8676
10 7 1.7919 -3.4206 -0.9347
11 6 2.6994 -3.0793 -2.0369
12 6 1.9845 -3.4239 -3.3503
13 6 1.6235 -4.9079 -3.3289
14 6 0.6266 -5.2084 -2.2076
15 1 -0.3525 -4.7799 -2.4210
16 6 1.1858 -4.7364 -0.8501
17 1 0.3937 -4.7340 -0.1013
18 6 2.2333 -5.8258 -0.5337
19 6 1.5583 -7.1054 -1.0780
20 7 0.5570 -6.6824 -2.0694
21 6 -0.2990 -7.5101 -2.7458
22 1 -1.0033 -7.0973 -3.4528
23 6 -0.2613 -8.8796 -2.5228
24 7 0.5975 -9.3827 -1.6615
25 14 -1.4284 -10.0088 -3.4459
26 1 -2.2871 -9.2015 -4.3494
27 1 -0.6445 -10.9830 -4.2470
28 1 -2.2818 -10.7395 -2.4749
29 1 -0.3634 0.0925 1.0234
30 1 -0.3633 0.8401 -0.5920
31 1 -0.3632 -0.9327 -0.4317
32 1 1.6966 2.1346 -0.0004
33 1 4.1558 2.0764 -0.0097
34 1 4.1872 -2.0725 -0.0004
35 1 3.6182 -3.6597 -1.9527
36 1 2.9311 -2.0145 -2.0103
37 1 2.6462 -3.2200 -4.1922
38 1 1.0771 -2.8274 -3.4447
39 1 2.5283 -5.4949 -3.1713
40 1 1.1804 -5.1831 -4.2860
41 1 3.1683 -5.6282 -1.0582
42 1 2.3996 -5.9029 0.5407
43 1 1.0707 -7.6422 -0.2644
44 1 2.3031 -7.7443 -1.5527
45 1 0.6235 -10.3398 -1.5053
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049396942.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:51
Heat of formation + Delta-G solvation = 13.526807 kcal
Electronic energy + Delta-G solvation = -27240.622521 eV
Core-core repulsion = 23643.893597 eV
Total energy + Delta-G solvation = -3596.728924 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.17134 -40.83766 -39.29025 -36.85619 -34.90871 -34.26874 -33.80682 -32.49081
-30.80496 -29.81978 -28.92127 -26.74345 -26.06399 -24.90508 -23.63416 -23.08819
-22.01839 -21.57121 -19.66326 -18.87106 -18.64956 -17.68258 -17.38154 -17.19548
-16.79672 -16.20745 -15.80882 -15.69778 -15.19661 -15.05049 -14.97961 -14.90202
-14.31760 -14.18736 -13.88918 -13.81055 -13.70125 -13.63806 -13.42429 -13.12738
-12.85645 -12.75809 -12.63436 -12.39055 -12.32135 -12.05242 -11.95651 -11.70684
-11.56411 -11.24402 -11.20564 -10.73204 -10.54352 -10.42632 -10.10436 -9.68720
-8.90794 -7.85007 -5.20883 -0.21156 0.18267 1.44839 1.46207 1.50771
1.56161 1.83773 2.48867 2.73271 3.23250 3.33570 3.52486 3.53604
3.65583 3.77215 3.83499 3.90624 3.98506 4.05862 4.09103 4.09446
4.33308 4.41626 4.52607 4.53265 4.54649 4.63273 4.65478 4.71121
4.75966 4.81334 4.86566 4.94314 5.02621 5.10583 5.14169 5.27079
5.31884 5.39099 5.52431 5.57371 5.62972 5.63781 5.72996 6.17126
6.29713 6.88008 7.00139 7.08419 7.74068 8.39360 9.25146
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.027788 B = 0.003386 C = 0.003347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1007.395813 B = 8266.708390 C = 8364.584107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.007 4.007
3 C -0.166 4.166
4 C 0.118 3.882
5 N -0.505 5.505
6 C 0.135 3.865
7 C -0.194 4.194
8 C 0.562 3.438
9 O -0.574 6.574
10 N -0.581 5.581
11 C 0.104 3.896
12 C -0.121 4.121
13 C -0.119 4.119
14 C 0.152 3.848
15 H 0.049 0.951
16 C 0.146 3.854
17 H 0.072 0.928
18 C -0.134 4.134
19 C 0.192 3.808
20 N -0.618 5.618
21 C -0.235 4.235
22 H 0.081 0.919
23 C -0.065 4.065
24 N -0.951 5.951
25 Si 0.977 3.023
26 H -0.266 1.266
27 H -0.291 1.291
28 H -0.295 1.295
29 H 0.082 0.918
30 H 0.103 0.897
31 H 0.046 0.954
32 H 0.176 0.824
33 H 0.195 0.805
34 H 0.166 0.834
35 H 0.087 0.913
36 H 0.103 0.897
37 H 0.102 0.898
38 H 0.065 0.935
39 H 0.054 0.946
40 H 0.049 0.951
41 H 0.085 0.915
42 H 0.068 0.932
43 H 0.010 0.990
44 H 0.013 0.987
45 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.051 24.421 -0.477 25.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.015 4.015
3 C -0.186 4.186
4 C -0.038 4.038
5 N -0.214 5.214
6 C -0.023 4.023
7 C -0.199 4.199
8 C 0.351 3.649
9 O -0.454 6.454
10 N -0.311 5.311
11 C -0.017 4.017
12 C -0.160 4.160
13 C -0.159 4.159
14 C 0.045 3.955
15 H 0.067 0.933
16 C 0.041 3.959
17 H 0.090 0.910
18 C -0.173 4.173
19 C 0.067 3.933
20 N -0.343 5.343
21 C -0.364 4.364
22 H 0.099 0.901
23 C -0.258 4.258
24 N -0.600 5.600
25 Si 0.805 3.195
26 H -0.190 1.190
27 H -0.218 1.218
28 H -0.222 1.222
29 H 0.100 0.900
30 H 0.122 0.878
31 H 0.065 0.935
32 H 0.193 0.807
33 H 0.212 0.788
34 H 0.183 0.817
35 H 0.105 0.895
36 H 0.121 0.879
37 H 0.120 0.880
38 H 0.083 0.917
39 H 0.073 0.927
40 H 0.068 0.932
41 H 0.103 0.897
42 H 0.087 0.913
43 H 0.029 0.971
44 H 0.032 0.968
45 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 7.472 24.062 -0.079 25.195
hybrid contribution -1.728 -1.714 -0.129 2.437
sum 5.744 22.348 -0.207 23.075
Atomic orbital electron populations
1.20884 0.89442 1.03357 1.03720 1.20611 0.97459 0.91852 0.91623
1.22344 0.95533 0.98847 1.01838 1.23576 0.92232 0.96896 0.91075
1.67799 1.41090 0.98720 1.13826 1.23028 0.89480 0.97366 0.92394
1.20725 0.96102 0.93151 1.09951 1.18628 0.81419 0.84056 0.80839
1.90772 1.35335 1.80022 1.39230 1.47556 1.46377 1.11644 1.25569
1.22175 0.92505 1.02239 0.84787 1.21864 1.01295 0.95168 0.97631
1.21906 0.99163 0.96320 0.98467 1.21535 0.96662 0.84021 0.93262
0.93306 1.21310 0.95366 0.81361 0.97889 0.90969 1.22943 0.98527
0.94938 1.00861 1.20853 0.89959 0.91901 0.90624 1.44975 1.40947
1.01203 1.47195 1.19425 1.11652 0.88307 1.17006 0.90080 1.25615
1.01233 0.98196 1.00779 1.70180 1.39615 1.11195 1.38978 0.85030
0.78085 0.78733 0.77604 1.19012 1.21810 1.22239 0.89966 0.87799
0.93480 0.80662 0.78830 0.81684 0.89513 0.87900 0.87974 0.91651
0.92720 0.93174 0.89659 0.91286 0.97142 0.96837 0.94452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.19 9.37 71.24 0.67 -1.52 16
2 C -0.01 -0.14 5.95 -19.40 -0.12 -0.25 16
3 C -0.17 -2.07 9.82 22.33 0.22 -1.85 16
4 C 0.12 1.52 11.17 84.69 0.95 2.47 16
5 N -0.51 -9.46 10.35 -194.76 -2.01 -11.47 16
6 C 0.14 2.76 8.96 85.04 0.76 3.52 16
7 C -0.19 -4.54 4.54 -19.99 -0.09 -4.63 16
8 C 0.56 17.22 6.12 86.78 0.53 17.75 16
9 O -0.57 -22.33 15.42 -3.90 -0.06 -22.39 16
10 N -0.58 -17.10 2.73 -797.79 -2.18 -19.28 16
11 C 0.10 2.27 5.24 86.48 0.45 2.72 16
12 C -0.12 -2.79 6.11 30.66 0.19 -2.60 16
13 C -0.12 -3.96 5.10 30.51 0.16 -3.80 16
14 C 0.15 6.20 3.60 45.08 0.16 6.37 16
15 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16
16 C 0.15 5.49 3.12 46.14 0.14 5.64 16
17 H 0.07 3.18 6.93 -2.39 -0.02 3.16 16
18 C -0.13 -5.11 6.08 31.61 0.19 -4.92 16
19 C 0.19 9.64 5.19 86.80 0.45 10.09 16
20 N -0.62 -31.72 2.91 -667.05 -1.94 -33.66 16
21 C -0.23 -13.19 10.29 84.03 0.86 -12.33 16
22 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16
23 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16
24 N -0.95 -57.71 10.33 21.65 0.22 -57.49 16
25 Si 0.98 46.29 29.55 68.60 2.03 48.31 16
26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16
29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.10 1.23 8.13 -2.39 -0.02 1.21 16
31 H 0.05 1.15 6.72 -2.39 -0.02 1.13 16
32 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16
33 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16
34 H 0.17 3.05 7.75 -2.91 -0.02 3.03 16
35 H 0.09 1.71 7.53 -2.39 -0.02 1.69 16
36 H 0.10 1.85 5.37 -2.38 -0.01 1.83 16
37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
39 H 0.05 1.94 7.12 -2.39 -0.02 1.92 16
40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
41 H 0.08 2.84 6.81 -2.38 -0.02 2.83 16
42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16
43 H 0.01 0.59 7.30 -2.39 -0.02 0.58 16
44 H 0.01 0.74 7.60 -2.38 -0.02 0.72 16
45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
Total: -1.00 -73.83 351.12 3.04 -70.79
By element:
Atomic # 1 Polarization: 10.81 SS G_CDS: 0.99 Total: 11.80 kcal
Atomic # 6 Polarization: 7.38 SS G_CDS: 6.00 Total: 13.38 kcal
Atomic # 7 Polarization: -115.98 SS G_CDS: -5.91 Total: -121.89 kcal
Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal
Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal
Total: -73.83 3.04 -70.79 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049396942.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.316 kcal
(2) G-P(sol) polarization free energy of solvation -73.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.488 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds