Wall clock time and date at job start Tue Mar 31 2020 11:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38400 * 120.85537 * 2 1 4 4 C 1.38309 * 119.30176 * 179.97438 * 3 2 1 5 5 N 1.31953 * 121.08569 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.87870 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56126 * 359.97438 * 6 5 4 8 8 C 1.47837 * 120.55645 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99923 * 227.64615 * 8 7 6 10 10 N 1.34783 * 120.00020 * 47.64173 * 8 7 6 11 11 C 1.47847 * 122.23118 * 5.27547 * 10 8 7 12 12 C 1.52715 * 111.05984 * 127.48979 * 11 10 8 13 13 C 1.53866 * 111.52396 * 48.53072 * 12 11 10 14 14 C 1.51080 * 107.34455 * 303.07496 * 13 12 11 15 15 H 1.08999 * 108.73420 * 308.53004 * 14 13 12 16 16 C 1.45729 * 122.22712 * 184.98730 * 10 8 7 17 17 H 1.09000 * 111.06525 * 119.50632 * 16 10 8 18 18 C 1.53426 * 116.38012 * 350.13919 * 16 10 8 19 19 C 1.55464 * 101.67403 * 207.27496 * 18 16 10 20 20 N 1.45026 * 119.18695 * 183.88576 * 14 13 12 21 21 C 1.36938 * 126.56092 * 28.77498 * 20 14 13 22 22 H 1.07994 * 119.99912 * 4.55858 * 21 20 14 23 23 C 1.38818 * 119.99797 * 184.56055 * 21 20 14 24 24 N 1.31621 * 119.99986 * 353.98808 * 23 21 20 25 25 Si 1.86797 * 119.99946 * 173.98441 * 23 21 20 26 26 H 1.48502 * 109.46822 * 94.99541 * 25 23 21 27 27 H 1.48493 * 109.47110 * 214.99739 * 25 23 21 28 28 H 1.48505 * 109.47279 * 335.00095 * 25 23 21 29 29 H 1.09002 * 109.47204 * 95.37619 * 1 2 3 30 30 H 1.09000 * 109.47262 * 215.37678 * 1 2 3 31 31 H 1.08997 * 109.47181 * 335.37958 * 1 2 3 32 32 H 1.08001 * 120.35032 * 0.24840 * 3 2 1 33 33 H 1.08006 * 119.45479 * 180.02562 * 4 3 2 34 34 H 1.07991 * 119.71428 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.16489 * 247.90037 * 11 10 8 36 36 H 1.09003 * 109.16160 * 7.08742 * 11 10 8 37 37 H 1.09000 * 109.07163 * 169.05863 * 12 11 10 38 38 H 1.08998 * 109.07126 * 288.07683 * 12 11 10 39 39 H 1.08999 * 109.88355 * 62.53949 * 13 12 11 40 40 H 1.09002 * 109.87959 * 183.53859 * 13 12 11 41 41 H 1.08999 * 110.98492 * 325.37112 * 18 16 10 42 42 H 1.09003 * 110.98795 * 89.13529 * 18 16 10 43 43 H 1.09003 * 109.96318 * 141.97972 * 19 18 16 44 44 H 1.09001 * 109.95951 * 263.21938 * 19 18 16 45 45 H 0.96991 * 119.99856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1537 0.0016 7 6 2.2249 -1.2017 0.0011 8 6 1.5175 -2.4999 0.0017 9 8 0.6043 -2.6947 -0.7764 10 7 1.8854 -3.4673 0.8651 11 6 2.9101 -3.2460 1.9075 12 6 2.3865 -3.6454 3.2854 13 6 1.7310 -5.0372 3.2585 14 6 0.6309 -4.9970 2.2238 15 1 -0.0077 -4.1369 2.4250 16 6 1.2950 -4.7994 0.8371 17 1 2.0530 -5.5600 0.6497 18 6 0.0694 -4.9830 -0.0674 19 6 -0.6755 -6.1470 0.6448 20 7 -0.2164 -6.1606 2.0467 21 6 -0.5386 -7.0879 3.0014 22 1 -0.2098 -6.9500 4.0208 23 6 -1.2881 -8.2050 2.6589 24 7 -1.7890 -8.3151 1.4467 25 14 -1.5855 -9.5522 3.9183 26 1 -2.8896 -9.3222 4.5904 27 1 -1.6057 -10.8713 3.2367 28 1 -0.4977 -9.5339 4.9291 29 1 -0.3634 -0.0963 -1.0232 30 1 -0.3634 -0.8379 0.5950 31 1 -0.3633 0.9342 0.4281 32 1 1.6966 2.1346 0.0040 33 1 4.1557 2.0763 0.0010 34 1 4.1871 -2.0725 0.0029 35 1 3.7927 -3.8413 1.6738 36 1 3.1846 -2.1912 1.9212 37 1 3.2161 -3.6561 3.9923 38 1 1.6495 -2.9121 3.6126 39 1 2.4702 -5.7899 2.9846 40 1 1.3121 -5.2686 4.2378 41 1 -0.5419 -4.0808 -0.0844 42 1 0.3679 -5.2689 -1.0760 43 1 -1.7521 -5.9816 0.6014 44 1 -0.4250 -7.0953 0.1692 45 1 -2.3122 -9.0959 1.2073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049396944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:55 Heat of formation + Delta-G solvation = 40.955988 kcal Electronic energy + Delta-G solvation = -27372.838027 eV Core-core repulsion = 23777.298522 eV Total energy + Delta-G solvation = -3595.539506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05799 -39.73053 -37.71697 -35.54565 -34.06506 -32.67678 -32.48516 -31.37075 -28.98795 -28.29936 -27.99043 -25.34530 -24.48986 -23.67685 -22.54661 -21.49383 -20.89113 -19.79109 -19.16294 -17.24254 -16.72760 -16.55243 -16.43553 -15.63396 -15.19926 -14.76351 -14.54024 -14.38427 -14.23596 -14.01023 -13.71286 -13.39762 -13.07597 -12.94613 -12.88556 -12.72545 -12.49864 -12.25668 -12.01059 -11.78261 -11.58128 -11.15043 -10.89388 -10.72594 -10.61111 -10.48575 -10.11483 -10.02696 -9.90506 -9.82321 -9.70788 -9.65900 -9.37899 -8.95726 -8.55110 -8.29058 -6.83201 -5.71370 -3.05024 0.59463 0.96214 2.75149 3.04910 3.39846 3.45118 3.47218 3.55946 4.11303 4.38306 4.46460 4.48791 4.51596 4.79960 4.81706 5.06077 5.15321 5.24871 5.27975 5.34506 5.39473 5.43252 5.51318 5.59103 5.62067 5.64469 5.75556 5.85238 5.90809 5.97540 6.06047 6.09490 6.23793 6.27677 6.36256 6.38486 6.54118 6.70907 6.75959 6.88147 7.16046 7.55643 7.60664 7.64817 7.68367 7.84191 8.25919 8.30119 9.19913 9.83231 10.51276 11.40511 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.003611 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.303111 B = 7752.350993 C = 8256.527485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.008 3.992 3 C -0.181 4.181 4 C 0.113 3.887 5 N -0.492 5.492 6 C 0.134 3.866 7 C -0.178 4.178 8 C 0.565 3.435 9 O -0.519 6.519 10 N -0.592 5.592 11 C 0.106 3.894 12 C -0.129 4.129 13 C -0.115 4.115 14 C 0.159 3.841 15 H 0.016 0.984 16 C 0.116 3.884 17 H 0.083 0.917 18 C -0.133 4.133 19 C 0.171 3.829 20 N -0.591 5.591 21 C -0.228 4.228 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.058 0.942 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 17.956 -1.139 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.001 4.001 3 C -0.200 4.200 4 C -0.043 4.043 5 N -0.201 5.201 6 C -0.024 4.024 7 C -0.183 4.183 8 C 0.352 3.648 9 O -0.396 6.396 10 N -0.324 5.324 11 C -0.017 4.017 12 C -0.167 4.167 13 C -0.154 4.154 14 C 0.050 3.950 15 H 0.033 0.967 16 C 0.012 3.988 17 H 0.101 0.899 18 C -0.171 4.171 19 C 0.046 3.954 20 N -0.316 5.316 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.091 17.640 -1.553 20.895 hybrid contribution -1.005 -0.738 0.707 1.433 sum 10.087 16.903 -0.847 19.702 Atomic orbital electron populations 1.20891 0.89342 1.03173 1.04099 1.20416 0.97280 0.91426 0.90968 1.22022 0.95576 0.98533 1.03907 1.22904 0.91730 0.96393 0.93250 1.67712 1.40754 0.98262 1.13325 1.23007 0.90269 0.96587 0.92575 1.21039 0.95541 0.94684 1.07034 1.17987 0.83052 0.82828 0.80960 1.90793 1.28531 1.80292 1.39961 1.47940 1.40569 1.12241 1.31635 1.21867 0.90546 1.01379 0.87872 1.21895 1.00797 0.98487 0.95563 1.21422 0.98169 0.95063 1.00706 1.20676 0.90900 0.91482 0.91981 0.96666 1.22376 0.95537 0.81043 0.99830 0.89942 1.23033 0.95587 1.01131 0.97340 1.21617 0.96088 0.94542 0.83123 1.43879 1.52956 1.26105 1.08654 1.18975 1.28835 0.98416 0.89394 0.90374 1.24830 1.00217 0.98400 0.96749 1.69960 1.38703 1.29433 1.18331 0.86160 0.77882 0.81870 0.80219 1.21717 1.21648 1.20627 0.89384 0.90434 0.91126 0.84234 0.82421 0.82244 0.91181 0.90388 0.90769 0.91918 0.91633 0.91411 0.89565 0.92162 0.94559 0.92376 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.96 36.00 0.32 -0.97 16 2 C 0.01 0.09 5.95 -103.91 -0.62 -0.53 16 3 C -0.18 -1.59 9.79 -39.50 -0.39 -1.98 16 4 C 0.11 1.01 11.17 -17.47 -0.20 0.82 16 5 N -0.49 -5.48 10.35 -12.91 -0.13 -5.61 16 6 C 0.13 1.53 8.78 -17.13 -0.15 1.38 16 7 C -0.18 -2.28 4.93 -104.82 -0.52 -2.80 16 8 C 0.57 8.86 6.48 -12.33 -0.08 8.78 16 9 O -0.52 -9.67 12.56 5.32 0.07 -9.60 16 10 N -0.59 -9.04 2.92 -165.40 -0.48 -9.53 16 11 C 0.11 1.27 5.25 -3.45 -0.02 1.25 16 12 C -0.13 -1.63 5.93 -26.43 -0.16 -1.78 16 13 C -0.12 -1.93 5.47 -27.25 -0.15 -2.08 16 14 C 0.16 3.26 2.55 -68.62 -0.17 3.08 16 15 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 16 C 0.12 2.16 3.32 -67.06 -0.22 1.93 16 17 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 18 C -0.13 -2.76 5.10 -25.20 -0.13 -2.89 16 19 C 0.17 4.28 5.47 -2.17 -0.01 4.27 16 20 N -0.59 -14.99 3.33 -164.28 -0.55 -15.53 16 21 C -0.23 -6.24 9.91 -15.06 -0.15 -6.39 16 22 H 0.08 2.05 7.37 -52.49 -0.39 1.66 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -27.00 10.48 55.49 0.58 -26.42 16 25 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.01 7.16 -51.93 -0.37 0.64 16 31 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.16 1.60 7.31 -52.49 -0.38 1.22 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.82 5.30 -51.93 -0.28 0.55 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 41 H 0.09 1.87 6.04 -51.93 -0.31 1.56 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.04 1.00 7.90 -51.93 -0.41 0.59 16 44 H 0.06 1.59 7.06 -51.93 -0.37 1.22 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -32.17 348.41 -9.70 -41.87 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.68 Total: 0.84 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.73 Total: 1.84 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.58 Total: -57.09 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.17 -9.70 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049396944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.828 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds