Wall clock time and date at job start Tue Mar 31 2020 11:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.38400 * 120.85537 * 2 1
4 4 C 1.38309 * 119.30176 * 179.97438 * 3 2 1
5 5 N 1.31953 * 121.08569 * 359.97438 * 4 3 2
6 6 C 1.31671 * 121.87870 * 0.02562 * 5 4 3
7 7 C 1.39563 * 120.56126 * 359.97438 * 6 5 4
8 8 C 1.47837 * 120.55645 * 180.02562 * 7 6 5
9 9 O 1.21548 * 119.99923 * 227.64615 * 8 7 6
10 10 N 1.34783 * 120.00020 * 47.64173 * 8 7 6
11 11 C 1.47847 * 122.23118 * 5.27547 * 10 8 7
12 12 C 1.52715 * 111.05984 * 127.48979 * 11 10 8
13 13 C 1.53866 * 111.52396 * 48.53072 * 12 11 10
14 14 C 1.51080 * 107.34455 * 303.07496 * 13 12 11
15 15 H 1.08999 * 108.73420 * 308.53004 * 14 13 12
16 16 C 1.45729 * 122.22712 * 184.98730 * 10 8 7
17 17 H 1.09000 * 111.06525 * 119.50632 * 16 10 8
18 18 C 1.53426 * 116.38012 * 350.13919 * 16 10 8
19 19 C 1.55464 * 101.67403 * 207.27496 * 18 16 10
20 20 N 1.45026 * 119.18695 * 183.88576 * 14 13 12
21 21 C 1.36938 * 126.56092 * 28.77498 * 20 14 13
22 22 H 1.07994 * 119.99912 * 4.55858 * 21 20 14
23 23 C 1.38818 * 119.99797 * 184.56055 * 21 20 14
24 24 N 1.31621 * 119.99986 * 353.98808 * 23 21 20
25 25 Si 1.86797 * 119.99946 * 173.98441 * 23 21 20
26 26 H 1.48502 * 109.46822 * 94.99541 * 25 23 21
27 27 H 1.48493 * 109.47110 * 214.99739 * 25 23 21
28 28 H 1.48505 * 109.47279 * 335.00095 * 25 23 21
29 29 H 1.09002 * 109.47204 * 95.37619 * 1 2 3
30 30 H 1.09000 * 109.47262 * 215.37678 * 1 2 3
31 31 H 1.08997 * 109.47181 * 335.37958 * 1 2 3
32 32 H 1.08001 * 120.35032 * 0.24840 * 3 2 1
33 33 H 1.08006 * 119.45479 * 180.02562 * 4 3 2
34 34 H 1.07991 * 119.71428 * 180.02562 * 6 5 4
35 35 H 1.08993 * 109.16489 * 247.90037 * 11 10 8
36 36 H 1.09003 * 109.16160 * 7.08742 * 11 10 8
37 37 H 1.09000 * 109.07163 * 169.05863 * 12 11 10
38 38 H 1.08998 * 109.07126 * 288.07683 * 12 11 10
39 39 H 1.08999 * 109.88355 * 62.53949 * 13 12 11
40 40 H 1.09002 * 109.87959 * 183.53859 * 13 12 11
41 41 H 1.08999 * 110.98492 * 325.37112 * 18 16 10
42 42 H 1.09003 * 110.98795 * 89.13529 * 18 16 10
43 43 H 1.09003 * 109.96318 * 141.97972 * 19 18 16
44 44 H 1.09001 * 109.95951 * 263.21938 * 19 18 16
45 45 H 0.96991 * 119.99856 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2168 1.1881 0.0000
4 6 3.5993 1.1506 0.0005
5 7 4.2498 0.0025 0.0016
6 6 3.6197 -1.1537 0.0016
7 6 2.2249 -1.2017 0.0011
8 6 1.5175 -2.4999 0.0017
9 8 0.6043 -2.6947 -0.7764
10 7 1.8854 -3.4673 0.8651
11 6 2.9101 -3.2460 1.9075
12 6 2.3865 -3.6454 3.2854
13 6 1.7310 -5.0372 3.2585
14 6 0.6309 -4.9970 2.2238
15 1 -0.0077 -4.1369 2.4250
16 6 1.2950 -4.7994 0.8371
17 1 2.0530 -5.5600 0.6497
18 6 0.0694 -4.9830 -0.0674
19 6 -0.6755 -6.1470 0.6448
20 7 -0.2164 -6.1606 2.0467
21 6 -0.5386 -7.0879 3.0014
22 1 -0.2098 -6.9500 4.0208
23 6 -1.2881 -8.2050 2.6589
24 7 -1.7890 -8.3151 1.4467
25 14 -1.5855 -9.5522 3.9183
26 1 -2.8896 -9.3222 4.5904
27 1 -1.6057 -10.8713 3.2367
28 1 -0.4977 -9.5339 4.9291
29 1 -0.3634 -0.0963 -1.0232
30 1 -0.3634 -0.8379 0.5950
31 1 -0.3633 0.9342 0.4281
32 1 1.6966 2.1346 0.0040
33 1 4.1557 2.0763 0.0010
34 1 4.1871 -2.0725 0.0029
35 1 3.7927 -3.8413 1.6738
36 1 3.1846 -2.1912 1.9212
37 1 3.2161 -3.6561 3.9923
38 1 1.6495 -2.9121 3.6126
39 1 2.4702 -5.7899 2.9846
40 1 1.3121 -5.2686 4.2378
41 1 -0.5419 -4.0808 -0.0844
42 1 0.3679 -5.2689 -1.0760
43 1 -1.7521 -5.9816 0.6014
44 1 -0.4250 -7.0953 0.1692
45 1 -2.3122 -9.0959 1.2073
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049396944.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:55
Heat of formation + Delta-G solvation = 20.849131 kcal
Electronic energy + Delta-G solvation = -27373.709926 eV
Core-core repulsion = 23777.298522 eV
Total energy + Delta-G solvation = -3596.411404 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.15612 -40.86724 -39.11441 -37.05159 -34.91173 -34.32617 -33.97924 -32.49093
-30.72830 -29.75388 -28.92982 -26.65051 -26.31369 -24.74885 -23.49210 -22.87132
-22.34178 -21.51298 -20.41016 -18.75839 -17.88635 -17.66772 -17.32658 -17.05463
-16.84828 -16.26473 -15.82829 -15.65820 -15.52675 -15.14206 -14.96057 -14.80204
-14.34533 -14.15204 -13.97873 -13.85061 -13.69873 -13.60709 -13.38621 -13.17343
-12.91623 -12.75060 -12.73272 -12.28454 -12.11553 -12.02224 -11.81061 -11.73718
-11.62791 -11.45558 -10.89380 -10.69607 -10.54572 -10.29568 -10.05978 -9.62423
-8.92423 -7.85678 -5.22226 -0.23159 0.17857 1.45802 1.47586 1.57082
1.60507 1.87166 2.49893 2.74678 3.19853 3.32569 3.45266 3.52724
3.66119 3.77388 3.89005 3.95852 3.98438 4.03861 4.09757 4.22213
4.30047 4.41305 4.52452 4.54327 4.56717 4.61168 4.63720 4.71120
4.74526 4.84703 4.91033 4.98697 5.06308 5.09936 5.13480 5.25354
5.28144 5.39110 5.47165 5.57972 5.59488 5.63528 5.72056 6.17958
6.39829 6.87540 7.05437 7.08043 7.75250 8.44604 9.26075
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.026501 B = 0.003611 C = 0.003390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.303111 B = 7752.350993 C = 8256.527485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.006 4.006
3 C -0.169 4.169
4 C 0.119 3.881
5 N -0.505 5.505
6 C 0.136 3.864
7 C -0.197 4.197
8 C 0.563 3.437
9 O -0.560 6.560
10 N -0.592 5.592
11 C 0.103 3.897
12 C -0.119 4.119
13 C -0.110 4.110
14 C 0.154 3.846
15 H -0.005 1.005
16 C 0.133 3.867
17 H 0.087 0.913
18 C -0.116 4.116
19 C 0.182 3.818
20 N -0.610 5.610
21 C -0.235 4.235
22 H 0.089 0.911
23 C -0.067 4.067
24 N -0.953 5.953
25 Si 0.978 3.022
26 H -0.290 1.290
27 H -0.295 1.295
28 H -0.262 1.262
29 H 0.078 0.922
30 H 0.046 0.954
31 H 0.100 0.900
32 H 0.174 0.826
33 H 0.195 0.805
34 H 0.171 0.829
35 H 0.095 0.905
36 H 0.100 0.900
37 H 0.112 0.888
38 H 0.057 0.943
39 H 0.069 0.931
40 H 0.057 0.943
41 H 0.076 0.924
42 H 0.064 0.936
43 H -0.004 1.004
44 H 0.028 0.972
45 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.823 20.604 0.291 24.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.015 4.015
3 C -0.188 4.188
4 C -0.037 4.037
5 N -0.214 5.214
6 C -0.022 4.022
7 C -0.202 4.202
8 C 0.352 3.648
9 O -0.439 6.439
10 N -0.323 5.323
11 C -0.018 4.018
12 C -0.157 4.157
13 C -0.149 4.149
14 C 0.046 3.954
15 H 0.012 0.988
16 C 0.027 3.973
17 H 0.105 0.895
18 C -0.154 4.154
19 C 0.056 3.944
20 N -0.335 5.335
21 C -0.364 4.364
22 H 0.106 0.894
23 C -0.260 4.260
24 N -0.602 5.602
25 Si 0.806 3.194
26 H -0.217 1.217
27 H -0.222 1.222
28 H -0.187 1.187
29 H 0.096 0.904
30 H 0.065 0.935
31 H 0.119 0.881
32 H 0.192 0.808
33 H 0.212 0.788
34 H 0.188 0.812
35 H 0.113 0.887
36 H 0.118 0.882
37 H 0.130 0.870
38 H 0.076 0.924
39 H 0.087 0.913
40 H 0.076 0.924
41 H 0.094 0.906
42 H 0.082 0.918
43 H 0.014 0.986
44 H 0.047 0.953
45 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 14.152 20.331 -0.086 24.772
hybrid contribution -1.961 -1.412 0.245 2.428
sum 12.192 18.919 0.159 22.508
Atomic orbital electron populations
1.20837 0.89700 1.03404 1.03164 1.20608 0.97326 0.92077 0.91472
1.22356 0.95654 0.98752 1.02059 1.23568 0.92104 0.96993 0.90989
1.67804 1.41041 0.98712 1.13883 1.23110 0.89460 0.97429 0.92211
1.20819 0.96188 0.93300 1.09900 1.18490 0.82496 0.83722 0.80084
1.90762 1.30469 1.81121 1.41565 1.47979 1.40997 1.10708 1.32655
1.22156 0.90068 1.03306 0.86245 1.21868 1.01647 0.95222 0.96991
1.21393 0.96822 0.98127 0.98508 1.20839 0.91225 0.88610 0.94744
0.98773 1.21964 0.94599 0.83387 0.97311 0.89525 1.22763 0.96410
0.98705 0.97529 1.21316 0.94298 0.94742 0.84021 1.44146 1.54030
1.27032 1.08277 1.19399 1.28063 0.98629 0.90278 0.89372 1.25715
1.00597 1.00878 0.98780 1.70190 1.39794 1.29747 1.20437 0.85068
0.77965 0.78329 0.78020 1.21739 1.22176 1.18679 0.90368 0.93504
0.88142 0.80850 0.78785 0.81224 0.88657 0.88226 0.86951 0.92421
0.91280 0.92429 0.90581 0.91757 0.98625 0.95348 0.94429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.43 8.96 71.23 0.64 -1.79 16
2 C -0.01 -0.13 5.95 -19.40 -0.12 -0.25 16
3 C -0.17 -2.31 9.79 22.33 0.22 -2.09 16
4 C 0.12 1.60 11.17 84.69 0.95 2.55 16
5 N -0.51 -9.43 10.35 -194.75 -2.01 -11.44 16
6 C 0.14 2.73 8.78 85.04 0.75 3.48 16
7 C -0.20 -4.75 4.93 -19.99 -0.10 -4.85 16
8 C 0.56 17.63 6.48 86.78 0.56 18.19 16
9 O -0.56 -21.66 12.56 -3.87 -0.05 -21.71 16
10 N -0.59 -17.65 2.92 -795.49 -2.32 -19.97 16
11 C 0.10 2.16 5.25 86.03 0.45 2.61 16
12 C -0.12 -2.66 5.93 30.79 0.18 -2.47 16
13 C -0.11 -3.57 5.47 30.26 0.17 -3.40 16
14 C 0.15 6.44 2.55 45.33 0.12 6.55 16
15 H -0.01 -0.24 8.05 -2.39 -0.02 -0.26 16
16 C 0.13 4.99 3.32 45.97 0.15 5.14 16
17 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16
18 C -0.12 -5.11 5.10 31.59 0.16 -4.95 16
19 C 0.18 9.76 5.47 87.03 0.48 10.23 16
20 N -0.61 -32.26 3.33 -673.65 -2.24 -34.50 16
21 C -0.24 -13.19 9.91 84.03 0.83 -12.36 16
22 H 0.09 4.65 7.37 -2.91 -0.02 4.63 16
23 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16
24 N -0.95 -58.96 10.48 21.65 0.23 -58.73 16
25 Si 0.98 46.03 29.56 68.60 2.03 48.05 16
26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16
27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
28 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16
29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
30 H 0.05 1.27 7.16 -2.39 -0.02 1.25 16
31 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16
32 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16
33 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16
34 H 0.17 2.92 7.31 -2.92 -0.02 2.90 16
35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
36 H 0.10 1.74 5.30 -2.39 -0.01 1.73 16
37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16
38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
39 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16
40 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16
41 H 0.08 3.54 6.04 -2.39 -0.01 3.52 16
42 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16
43 H 0.00 -0.27 7.90 -2.39 -0.02 -0.29 16
44 H 0.03 1.67 7.06 -2.39 -0.02 1.65 16
45 H 0.25 14.83 8.31 -92.72 -0.77 14.06 16
Total: -1.00 -75.20 348.41 2.52 -72.68
By element:
Atomic # 1 Polarization: 11.43 SS G_CDS: 0.99 Total: 12.42 kcal
Atomic # 6 Polarization: 7.30 SS G_CDS: 5.90 Total: 13.20 kcal
Atomic # 7 Polarization: -118.29 SS G_CDS: -6.35 Total: -124.65 kcal
Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal
Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal
Total: -75.20 2.52 -72.68 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049396944.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.529 kcal
(2) G-P(sol) polarization free energy of solvation -75.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.849 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds