Wall clock time and date at job start Tue Mar 31 2020 11:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38400 * 120.85537 * 2 1 4 4 C 1.38309 * 119.30176 * 179.97438 * 3 2 1 5 5 N 1.31953 * 121.08569 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.87870 * 0.02562 * 5 4 3 7 7 C 1.39563 * 120.56126 * 359.97438 * 6 5 4 8 8 C 1.47837 * 120.55645 * 180.02562 * 7 6 5 9 9 O 1.21548 * 119.99923 * 227.64615 * 8 7 6 10 10 N 1.34783 * 120.00020 * 47.64173 * 8 7 6 11 11 C 1.47847 * 122.23118 * 5.27547 * 10 8 7 12 12 C 1.52715 * 111.05984 * 127.48979 * 11 10 8 13 13 C 1.53866 * 111.52396 * 48.53072 * 12 11 10 14 14 C 1.51080 * 107.34455 * 303.07496 * 13 12 11 15 15 H 1.08999 * 108.73420 * 308.53004 * 14 13 12 16 16 C 1.45729 * 122.22712 * 184.98730 * 10 8 7 17 17 H 1.09000 * 111.06525 * 119.50632 * 16 10 8 18 18 C 1.53426 * 116.38012 * 350.13919 * 16 10 8 19 19 C 1.55464 * 101.67403 * 207.27496 * 18 16 10 20 20 N 1.45026 * 119.18695 * 183.88576 * 14 13 12 21 21 C 1.36938 * 126.56092 * 28.77498 * 20 14 13 22 22 H 1.07994 * 119.99912 * 4.55858 * 21 20 14 23 23 C 1.38818 * 119.99797 * 184.56055 * 21 20 14 24 24 N 1.31621 * 119.99986 * 353.98808 * 23 21 20 25 25 Si 1.86797 * 119.99946 * 173.98441 * 23 21 20 26 26 H 1.48502 * 109.46822 * 94.99541 * 25 23 21 27 27 H 1.48493 * 109.47110 * 214.99739 * 25 23 21 28 28 H 1.48505 * 109.47279 * 335.00095 * 25 23 21 29 29 H 1.09002 * 109.47204 * 95.37619 * 1 2 3 30 30 H 1.09000 * 109.47262 * 215.37678 * 1 2 3 31 31 H 1.08997 * 109.47181 * 335.37958 * 1 2 3 32 32 H 1.08001 * 120.35032 * 0.24840 * 3 2 1 33 33 H 1.08006 * 119.45479 * 180.02562 * 4 3 2 34 34 H 1.07991 * 119.71428 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.16489 * 247.90037 * 11 10 8 36 36 H 1.09003 * 109.16160 * 7.08742 * 11 10 8 37 37 H 1.09000 * 109.07163 * 169.05863 * 12 11 10 38 38 H 1.08998 * 109.07126 * 288.07683 * 12 11 10 39 39 H 1.08999 * 109.88355 * 62.53949 * 13 12 11 40 40 H 1.09002 * 109.87959 * 183.53859 * 13 12 11 41 41 H 1.08999 * 110.98492 * 325.37112 * 18 16 10 42 42 H 1.09003 * 110.98795 * 89.13529 * 18 16 10 43 43 H 1.09003 * 109.96318 * 141.97972 * 19 18 16 44 44 H 1.09001 * 109.95951 * 263.21938 * 19 18 16 45 45 H 0.96991 * 119.99856 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1537 0.0016 7 6 2.2249 -1.2017 0.0011 8 6 1.5175 -2.4999 0.0017 9 8 0.6043 -2.6947 -0.7764 10 7 1.8854 -3.4673 0.8651 11 6 2.9101 -3.2460 1.9075 12 6 2.3865 -3.6454 3.2854 13 6 1.7310 -5.0372 3.2585 14 6 0.6309 -4.9970 2.2238 15 1 -0.0077 -4.1369 2.4250 16 6 1.2950 -4.7994 0.8371 17 1 2.0530 -5.5600 0.6497 18 6 0.0694 -4.9830 -0.0674 19 6 -0.6755 -6.1470 0.6448 20 7 -0.2164 -6.1606 2.0467 21 6 -0.5386 -7.0879 3.0014 22 1 -0.2098 -6.9500 4.0208 23 6 -1.2881 -8.2050 2.6589 24 7 -1.7890 -8.3151 1.4467 25 14 -1.5855 -9.5522 3.9183 26 1 -2.8896 -9.3222 4.5904 27 1 -1.6057 -10.8713 3.2367 28 1 -0.4977 -9.5339 4.9291 29 1 -0.3634 -0.0963 -1.0232 30 1 -0.3634 -0.8379 0.5950 31 1 -0.3633 0.9342 0.4281 32 1 1.6966 2.1346 0.0040 33 1 4.1557 2.0763 0.0010 34 1 4.1871 -2.0725 0.0029 35 1 3.7927 -3.8413 1.6738 36 1 3.1846 -2.1912 1.9212 37 1 3.2161 -3.6561 3.9923 38 1 1.6495 -2.9121 3.6126 39 1 2.4702 -5.7899 2.9846 40 1 1.3121 -5.2686 4.2378 41 1 -0.5419 -4.0808 -0.0844 42 1 0.3679 -5.2689 -1.0760 43 1 -1.7521 -5.9816 0.6014 44 1 -0.4250 -7.0953 0.1692 45 1 -2.3122 -9.0959 1.2073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049396944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:55 Heat of formation + Delta-G solvation = 20.849131 kcal Electronic energy + Delta-G solvation = -27373.709926 eV Core-core repulsion = 23777.298522 eV Total energy + Delta-G solvation = -3596.411404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15612 -40.86724 -39.11441 -37.05159 -34.91173 -34.32617 -33.97924 -32.49093 -30.72830 -29.75388 -28.92982 -26.65051 -26.31369 -24.74885 -23.49210 -22.87132 -22.34178 -21.51298 -20.41016 -18.75839 -17.88635 -17.66772 -17.32658 -17.05463 -16.84828 -16.26473 -15.82829 -15.65820 -15.52675 -15.14206 -14.96057 -14.80204 -14.34533 -14.15204 -13.97873 -13.85061 -13.69873 -13.60709 -13.38621 -13.17343 -12.91623 -12.75060 -12.73272 -12.28454 -12.11553 -12.02224 -11.81061 -11.73718 -11.62791 -11.45558 -10.89380 -10.69607 -10.54572 -10.29568 -10.05978 -9.62423 -8.92423 -7.85678 -5.22226 -0.23159 0.17857 1.45802 1.47586 1.57082 1.60507 1.87166 2.49893 2.74678 3.19853 3.32569 3.45266 3.52724 3.66119 3.77388 3.89005 3.95852 3.98438 4.03861 4.09757 4.22213 4.30047 4.41305 4.52452 4.54327 4.56717 4.61168 4.63720 4.71120 4.74526 4.84703 4.91033 4.98697 5.06308 5.09936 5.13480 5.25354 5.28144 5.39110 5.47165 5.57972 5.59488 5.63528 5.72056 6.17958 6.39829 6.87540 7.05437 7.08043 7.75250 8.44604 9.26075 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.003611 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.303111 B = 7752.350993 C = 8256.527485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.006 4.006 3 C -0.169 4.169 4 C 0.119 3.881 5 N -0.505 5.505 6 C 0.136 3.864 7 C -0.197 4.197 8 C 0.563 3.437 9 O -0.560 6.560 10 N -0.592 5.592 11 C 0.103 3.897 12 C -0.119 4.119 13 C -0.110 4.110 14 C 0.154 3.846 15 H -0.005 1.005 16 C 0.133 3.867 17 H 0.087 0.913 18 C -0.116 4.116 19 C 0.182 3.818 20 N -0.610 5.610 21 C -0.235 4.235 22 H 0.089 0.911 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.262 1.262 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.195 0.805 34 H 0.171 0.829 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.064 0.936 43 H -0.004 1.004 44 H 0.028 0.972 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 20.604 0.291 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.015 4.015 3 C -0.188 4.188 4 C -0.037 4.037 5 N -0.214 5.214 6 C -0.022 4.022 7 C -0.202 4.202 8 C 0.352 3.648 9 O -0.439 6.439 10 N -0.323 5.323 11 C -0.018 4.018 12 C -0.157 4.157 13 C -0.149 4.149 14 C 0.046 3.954 15 H 0.012 0.988 16 C 0.027 3.973 17 H 0.105 0.895 18 C -0.154 4.154 19 C 0.056 3.944 20 N -0.335 5.335 21 C -0.364 4.364 22 H 0.106 0.894 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.187 1.187 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.188 0.812 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.014 0.986 44 H 0.047 0.953 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.152 20.331 -0.086 24.772 hybrid contribution -1.961 -1.412 0.245 2.428 sum 12.192 18.919 0.159 22.508 Atomic orbital electron populations 1.20837 0.89700 1.03404 1.03164 1.20608 0.97326 0.92077 0.91472 1.22356 0.95654 0.98752 1.02059 1.23568 0.92104 0.96993 0.90989 1.67804 1.41041 0.98712 1.13883 1.23110 0.89460 0.97429 0.92211 1.20819 0.96188 0.93300 1.09900 1.18490 0.82496 0.83722 0.80084 1.90762 1.30469 1.81121 1.41565 1.47979 1.40997 1.10708 1.32655 1.22156 0.90068 1.03306 0.86245 1.21868 1.01647 0.95222 0.96991 1.21393 0.96822 0.98127 0.98508 1.20839 0.91225 0.88610 0.94744 0.98773 1.21964 0.94599 0.83387 0.97311 0.89525 1.22763 0.96410 0.98705 0.97529 1.21316 0.94298 0.94742 0.84021 1.44146 1.54030 1.27032 1.08277 1.19399 1.28063 0.98629 0.90278 0.89372 1.25715 1.00597 1.00878 0.98780 1.70190 1.39794 1.29747 1.20437 0.85068 0.77965 0.78329 0.78020 1.21739 1.22176 1.18679 0.90368 0.93504 0.88142 0.80850 0.78785 0.81224 0.88657 0.88226 0.86951 0.92421 0.91280 0.92429 0.90581 0.91757 0.98625 0.95348 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 8.96 71.23 0.64 -1.79 16 2 C -0.01 -0.13 5.95 -19.40 -0.12 -0.25 16 3 C -0.17 -2.31 9.79 22.33 0.22 -2.09 16 4 C 0.12 1.60 11.17 84.69 0.95 2.55 16 5 N -0.51 -9.43 10.35 -194.75 -2.01 -11.44 16 6 C 0.14 2.73 8.78 85.04 0.75 3.48 16 7 C -0.20 -4.75 4.93 -19.99 -0.10 -4.85 16 8 C 0.56 17.63 6.48 86.78 0.56 18.19 16 9 O -0.56 -21.66 12.56 -3.87 -0.05 -21.71 16 10 N -0.59 -17.65 2.92 -795.49 -2.32 -19.97 16 11 C 0.10 2.16 5.25 86.03 0.45 2.61 16 12 C -0.12 -2.66 5.93 30.79 0.18 -2.47 16 13 C -0.11 -3.57 5.47 30.26 0.17 -3.40 16 14 C 0.15 6.44 2.55 45.33 0.12 6.55 16 15 H -0.01 -0.24 8.05 -2.39 -0.02 -0.26 16 16 C 0.13 4.99 3.32 45.97 0.15 5.14 16 17 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 18 C -0.12 -5.11 5.10 31.59 0.16 -4.95 16 19 C 0.18 9.76 5.47 87.03 0.48 10.23 16 20 N -0.61 -32.26 3.33 -673.65 -2.24 -34.50 16 21 C -0.24 -13.19 9.91 84.03 0.83 -12.36 16 22 H 0.09 4.65 7.37 -2.91 -0.02 4.63 16 23 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 24 N -0.95 -58.96 10.48 21.65 0.23 -58.73 16 25 Si 0.98 46.03 29.56 68.60 2.03 48.05 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.27 7.16 -2.39 -0.02 1.25 16 31 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 32 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.17 2.92 7.31 -2.92 -0.02 2.90 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.74 5.30 -2.39 -0.01 1.73 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 40 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 41 H 0.08 3.54 6.04 -2.39 -0.01 3.52 16 42 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.00 -0.27 7.90 -2.39 -0.02 -0.29 16 44 H 0.03 1.67 7.06 -2.39 -0.02 1.65 16 45 H 0.25 14.83 8.31 -92.72 -0.77 14.06 16 Total: -1.00 -75.20 348.41 2.52 -72.68 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.99 Total: 12.42 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.90 Total: 13.20 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -6.35 Total: -124.65 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -75.20 2.52 -72.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049396944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.529 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds