Wall clock time and date at job start Tue Mar 31 2020 10:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31689 * 119.71984 * 2 1 4 4 C 1.31925 * 121.88133 * 180.24518 * 3 2 1 5 5 C 1.38350 * 121.08014 * 359.78023 * 4 3 2 6 6 C 1.38350 * 119.30127 * 359.97367 * 5 4 3 7 7 C 1.39523 * 119.71482 * 179.76555 * 2 1 3 8 8 C 1.47841 * 120.55802 * 0.02562 * 7 2 1 9 9 O 1.21546 * 120.00077 * 53.69756 * 8 7 2 10 10 N 1.34785 * 119.99631 * 233.69250 * 8 7 2 11 11 C 1.47852 * 121.94487 * 355.08287 * 10 8 7 12 12 C 1.52714 * 111.23576 * 127.34772 * 11 10 8 13 13 C 1.53868 * 111.52323 * 48.17266 * 12 11 10 14 14 C 1.51076 * 107.34321 * 303.07239 * 13 12 11 15 15 H 1.09002 * 108.30771 * 308.75680 * 14 13 12 16 16 C 1.45722 * 122.22422 * 174.37329 * 10 8 7 17 17 H 1.09008 * 111.63704 * 119.13696 * 16 10 8 18 18 C 1.53430 * 116.37589 * 350.09179 * 16 10 8 19 19 C 1.55477 * 101.66935 * 207.26353 * 18 16 10 20 20 N 1.45029 * 119.18860 * 183.88398 * 14 13 12 21 21 C 1.36937 * 126.55999 * 28.78970 * 20 14 13 22 22 H 1.07994 * 120.00128 * 0.48527 * 21 20 14 23 23 C 1.38817 * 119.99940 * 180.48439 * 21 20 14 24 24 N 1.31616 * 120.00018 * 347.51706 * 23 21 20 25 25 Si 1.86798 * 119.99730 * 167.51009 * 23 21 20 26 26 H 1.48506 * 109.47339 * 275.02742 * 25 23 21 27 27 H 1.48497 * 109.47047 * 35.03148 * 25 23 21 28 28 H 1.48503 * 109.47019 * 155.03297 * 25 23 21 29 29 H 1.09006 * 109.46915 * 264.89091 * 1 2 3 30 30 H 1.09004 * 109.47354 * 24.88647 * 1 2 3 31 31 H 1.09003 * 109.47422 * 144.89163 * 1 2 3 32 32 H 1.08000 * 119.46114 * 179.75333 * 4 3 2 33 33 H 1.08005 * 120.34832 * 179.97438 * 5 4 3 34 34 H 1.08005 * 120.85361 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.35339 * 6.70257 * 11 10 8 36 36 H 1.08992 * 108.74297 * 247.59585 * 11 10 8 37 37 H 1.09004 * 109.06628 * 287.64547 * 12 11 10 38 38 H 1.09004 * 109.01212 * 168.66750 * 12 11 10 39 39 H 1.09005 * 109.88111 * 183.61424 * 13 12 11 40 40 H 1.09000 * 109.87933 * 62.53499 * 13 12 11 41 41 H 1.09005 * 110.98924 * 89.17491 * 18 16 10 42 42 H 1.08998 * 111.01976 * 325.37397 * 18 16 10 43 43 H 1.08995 * 109.96382 * 263.22353 * 19 18 16 44 44 H 1.08994 * 109.99134 * 141.99453 * 19 18 16 45 45 H 0.97000 * 120.00402 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1934 -0.0048 5 6 4.2365 0.0363 -0.0055 6 6 3.5986 -1.1913 -0.0006 7 6 2.1986 -1.2118 0.0050 8 6 1.4655 -2.4956 0.0096 9 8 0.6232 -2.7176 -0.8381 10 7 1.7312 -3.4199 0.9540 11 6 2.8186 -3.2410 1.9396 12 6 2.3074 -3.4251 3.3668 13 6 1.4624 -4.7037 3.5033 14 6 0.3329 -4.6056 2.5048 15 1 -0.1611 -3.6434 2.6400 16 6 0.9577 -4.6486 1.0781 17 1 1.5814 -5.5319 0.9397 18 6 -0.3215 -4.7368 0.2355 19 6 -1.1903 -5.7080 1.0836 20 7 -0.6766 -5.6465 2.4744 21 6 -1.0823 -6.4204 3.5288 22 1 -0.6429 -6.2765 4.5047 23 6 -2.0584 -7.3898 3.3431 24 7 -2.7667 -7.4065 2.2340 25 14 -2.3664 -8.6706 4.6675 26 1 -1.4151 -9.7981 4.4967 27 1 -2.1709 -8.0563 6.0052 28 1 -3.7582 -9.1758 4.5534 29 1 -0.3633 -0.0915 1.0236 30 1 -0.3634 0.9323 -0.4325 31 1 -0.3634 -0.8407 -0.5910 32 1 3.9734 2.1531 -0.0086 33 1 5.3152 0.0908 -0.0099 34 1 4.1660 -2.1104 -0.0006 35 1 3.2388 -2.2405 1.8364 36 1 3.5966 -3.9779 1.7404 37 1 1.6974 -2.5641 3.6404 38 1 3.1594 -3.4872 4.0440 39 1 1.0590 -4.7754 4.5134 40 1 2.0754 -5.5781 3.2850 41 1 -0.1129 -5.1576 -0.7481 42 1 -0.7996 -3.7612 0.1473 43 1 -1.0983 -6.7231 0.6976 44 1 -2.2336 -5.3935 1.0582 45 1 -3.4486 -8.0841 2.1040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049675566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:48 Heat of formation + Delta-G solvation = 21.447142 kcal Electronic energy + Delta-G solvation = -27426.032454 eV Core-core repulsion = 23829.646981 eV Total energy + Delta-G solvation = -3596.385473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14499 -40.85214 -39.09453 -37.02276 -34.45176 -34.20116 -33.79884 -33.23595 -30.83382 -29.74749 -28.79484 -26.64331 -26.32465 -24.75923 -23.44508 -22.87482 -22.38621 -21.49636 -20.43439 -18.70954 -17.82254 -17.78945 -17.28403 -17.05506 -16.81905 -16.27833 -15.82094 -15.66166 -15.45177 -15.29303 -14.98337 -14.67015 -14.33051 -14.16616 -14.06553 -13.91360 -13.48623 -13.42228 -13.18638 -13.16301 -13.07154 -12.86222 -12.73023 -12.23839 -12.13936 -12.02914 -11.80828 -11.72804 -11.60642 -11.46190 -10.94372 -10.76133 -10.68219 -10.29256 -9.93614 -9.60461 -8.93576 -7.87608 -5.20750 -0.19482 0.20899 1.45728 1.48799 1.53705 1.56747 1.89613 2.50311 2.72803 3.19165 3.31131 3.33646 3.47760 3.71458 3.87309 3.92134 3.96443 3.99119 4.03942 4.13222 4.21558 4.30108 4.50785 4.52611 4.55178 4.57812 4.59125 4.61179 4.63452 4.74428 4.87447 4.99172 5.05448 5.08176 5.09377 5.11316 5.14170 5.26496 5.39779 5.47443 5.55259 5.58842 5.66496 5.68791 6.15441 6.38745 6.92803 7.03310 7.07011 7.74555 8.44657 9.25690 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003685 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.668161 B = 7596.881115 C = 8087.617960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.158 3.842 3 N -0.509 5.509 4 C 0.114 3.886 5 C -0.165 4.165 6 C -0.043 4.043 7 C -0.191 4.191 8 C 0.564 3.436 9 O -0.561 6.561 10 N -0.590 5.590 11 C 0.100 3.900 12 C -0.120 4.120 13 C -0.111 4.111 14 C 0.154 3.846 15 H -0.006 1.006 16 C 0.133 3.867 17 H 0.089 0.911 18 C -0.110 4.110 19 C 0.182 3.818 20 N -0.611 5.611 21 C -0.236 4.236 22 H 0.089 0.911 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.283 1.283 27 H -0.267 1.267 28 H -0.299 1.299 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.193 0.807 33 H 0.185 0.815 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.018 0.982 44 H 0.006 0.994 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.442 15.366 -1.643 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.020 3.980 3 N -0.219 5.219 4 C -0.043 4.043 5 C -0.185 4.185 6 C -0.069 4.069 7 C -0.197 4.197 8 C 0.352 3.648 9 O -0.441 6.441 10 N -0.321 5.321 11 C -0.021 4.021 12 C -0.159 4.159 13 C -0.149 4.149 14 C 0.045 3.955 15 H 0.012 0.988 16 C 0.028 3.972 17 H 0.107 0.893 18 C -0.148 4.148 19 C 0.057 3.943 20 N -0.335 5.335 21 C -0.365 4.365 22 H 0.107 0.893 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.210 1.210 27 H -0.191 1.191 28 H -0.226 1.226 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.210 0.790 33 H 0.202 0.798 34 H 0.182 0.818 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.036 0.964 44 H 0.025 0.975 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.369 15.876 -2.028 25.126 hybrid contribution -0.853 -1.797 0.401 2.029 sum 18.516 14.079 -1.627 23.318 Atomic orbital electron populations 1.20889 0.89265 1.04326 1.03176 1.21275 0.97067 0.87331 0.92290 1.67617 1.11923 1.28051 1.14297 1.23637 0.88436 1.00960 0.91276 1.22504 1.03661 0.91447 1.00840 1.22065 0.91256 1.01069 0.92499 1.20662 0.96225 0.93274 1.09490 1.18477 0.82121 0.83434 0.80738 1.90759 1.35142 1.79315 1.38844 1.48016 1.34430 1.18502 1.31178 1.22253 0.88293 1.04448 0.87108 1.21878 1.00757 0.96443 0.96773 1.21406 0.95897 0.98980 0.98652 1.20967 0.89673 0.90180 0.94636 0.98841 1.22087 0.91977 0.86432 0.96689 0.89305 1.22633 0.95199 0.99541 0.97470 1.21413 0.94235 0.95366 0.83282 1.44341 1.41911 1.40865 1.06406 1.19375 1.16926 1.10527 0.89670 0.89310 1.25661 0.98345 1.01925 0.99979 1.70203 1.24876 1.36287 1.28595 0.85128 0.76266 0.79385 0.78789 1.20999 1.19145 1.22614 0.90637 0.89440 0.90707 0.78980 0.79811 0.81831 0.87525 0.88471 0.92674 0.86814 0.92559 0.91127 0.91423 0.91542 0.96406 0.97543 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 9.67 71.23 0.69 -2.60 16 2 C 0.16 4.10 6.82 42.89 0.29 4.40 16 3 N -0.51 -11.50 10.26 -182.85 -1.88 -13.37 16 4 C 0.11 1.60 11.17 84.71 0.95 2.54 16 5 C -0.17 -1.71 10.10 22.32 0.23 -1.48 16 6 C -0.04 -0.66 7.61 22.73 0.17 -0.48 16 7 C -0.19 -4.66 4.97 -19.99 -0.10 -4.76 16 8 C 0.56 17.56 6.57 86.78 0.57 18.13 16 9 O -0.56 -21.81 12.11 -3.86 -0.05 -21.86 16 10 N -0.59 -17.12 2.92 -793.89 -2.32 -19.44 16 11 C 0.10 1.91 5.57 86.03 0.48 2.39 16 12 C -0.12 -2.56 5.92 30.79 0.18 -2.38 16 13 C -0.11 -3.50 5.45 30.26 0.16 -3.34 16 14 C 0.15 6.34 2.59 45.61 0.12 6.46 16 15 H -0.01 -0.27 8.03 -2.39 -0.02 -0.28 16 16 C 0.13 4.92 3.35 46.25 0.16 5.07 16 17 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 18 C -0.11 -4.80 4.93 31.59 0.16 -4.64 16 19 C 0.18 9.69 5.46 86.87 0.47 10.16 16 20 N -0.61 -32.00 3.35 -669.85 -2.24 -34.24 16 21 C -0.24 -13.20 9.92 84.03 0.83 -12.37 16 22 H 0.09 4.66 7.34 -2.91 -0.02 4.64 16 23 C -0.07 -3.80 5.44 84.86 0.46 -3.33 16 24 N -0.95 -58.84 10.65 21.65 0.23 -58.61 16 25 Si 0.98 45.90 29.57 68.60 2.03 47.93 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.42 5.89 -2.39 -0.01 2.40 16 32 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 33 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.16 1.69 7.42 -2.91 -0.02 1.66 16 35 H 0.11 1.56 4.86 -2.38 -0.01 1.55 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.06 1.90 7.70 -2.38 -0.02 1.88 16 40 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 41 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 42 H 0.07 3.06 6.39 -2.39 -0.02 3.04 16 43 H 0.02 1.02 7.53 -2.39 -0.02 1.00 16 44 H 0.01 0.38 7.60 -2.39 -0.02 0.36 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -76.88 348.02 2.59 -74.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.99 Total: 11.52 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.82 Total: 13.77 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.21 Total: -125.66 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.88 2.59 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049675566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.741 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds