Wall clock time and date at job start Tue Mar 31 2020 11:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 120.49758 * 2 1 4 4 N 1.31801 * 120.89328 * 180.28708 * 3 2 1 5 5 C 1.31825 * 122.04789 * 359.73324 * 4 3 2 6 6 C 1.38125 * 120.89756 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50201 * 179.76625 * 2 1 3 8 8 C 1.48146 * 120.92218 * 359.97438 * 7 2 1 9 9 O 1.21524 * 119.99880 * 33.94380 * 8 7 2 10 10 N 1.34774 * 120.00274 * 213.94185 * 8 7 2 11 11 C 1.47663 * 134.45646 * 184.70722 * 10 8 7 12 12 C 1.53513 * 85.97743 * 204.28838 * 11 10 8 13 13 C 1.47668 * 134.45654 * 4.66303 * 10 8 7 14 14 C 1.52672 * 113.57314 * 91.01250 * 12 11 10 15 15 C 1.53341 * 109.11335 * 73.81480 * 14 12 11 16 16 N 1.46881 * 108.76031 * 52.40611 * 15 14 12 17 17 C 1.36941 * 120.46816 * 124.47126 * 16 15 14 18 18 H 1.07997 * 119.99434 * 326.95253 * 17 16 15 19 19 C 1.38808 * 119.99844 * 147.22602 * 17 16 15 20 20 N 1.31615 * 120.00416 * 345.73077 * 19 17 16 21 21 Si 1.86799 * 119.99495 * 165.73432 * 19 17 16 22 22 H 1.48494 * 109.47366 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47129 * 119.99990 * 21 19 17 24 24 H 1.48505 * 109.46880 * 239.99532 * 21 19 17 25 25 C 1.46885 * 119.06861 * 304.74582 * 16 15 14 26 26 C 1.52669 * 113.56506 * 222.23081 * 12 11 10 27 27 H 1.09003 * 109.47453 * 264.43888 * 1 2 3 28 28 H 1.09005 * 109.47546 * 24.44125 * 1 2 3 29 29 H 1.09004 * 109.47354 * 144.44289 * 1 2 3 30 30 H 1.08000 * 119.55371 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.55007 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.49463 * 179.97438 * 6 5 4 33 33 H 1.08997 * 113.79687 * 90.02603 * 11 10 8 34 34 H 1.08998 * 113.79066 * 318.55235 * 11 10 8 35 35 H 1.09007 * 113.78449 * 41.44783 * 13 10 8 36 36 H 1.08991 * 113.79583 * 269.97381 * 13 10 8 37 37 H 1.08996 * 109.53198 * 313.92600 * 14 12 11 38 38 H 1.08998 * 109.59192 * 193.74645 * 14 12 11 39 39 H 1.08996 * 109.58845 * 292.62742 * 15 14 12 40 40 H 1.09000 * 109.58804 * 172.18829 * 15 14 12 41 41 H 0.96997 * 119.99962 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.59190 * 175.04256 * 25 16 15 43 43 H 1.08998 * 109.58901 * 295.47410 * 25 16 15 44 44 H 1.09002 * 109.53197 * 46.07535 * 26 12 11 45 45 H 1.09003 * 109.53182 * 166.22004 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0057 5 6 4.2334 0.0872 -0.0063 6 6 3.6137 -1.1472 -0.0016 7 6 2.2165 -1.2045 0.0049 8 6 1.5079 -2.5055 0.0108 9 8 0.4503 -2.6240 -0.5760 10 7 2.0361 -3.5576 0.6668 11 6 1.6659 -4.9801 0.8081 12 6 2.4548 -4.9429 2.1245 13 6 3.2174 -3.7501 1.5317 14 6 1.6014 -4.5814 3.3377 15 6 0.7169 -5.7791 3.7042 16 7 1.5666 -6.9692 3.8423 17 6 1.5536 -7.7012 4.9995 18 1 1.3933 -7.2095 5.9476 19 6 1.7521 -9.0743 4.9545 20 7 1.6727 -9.7135 3.8067 21 14 2.1318 -10.0150 6.5230 22 1 2.1661 -9.0721 7.6697 23 1 1.0801 -11.0376 6.7538 24 1 3.4516 -10.6831 6.3923 25 6 2.4351 -7.3597 2.7239 26 6 3.3266 -6.1760 2.3487 27 1 -0.3634 -0.0996 1.0228 28 1 -0.3634 0.9356 -0.4252 29 1 -0.3634 -0.8361 -0.5976 30 1 1.6690 2.1264 -0.0004 31 1 5.3120 0.1417 -0.0107 32 1 4.1995 -2.0546 -0.0026 33 1 2.1068 -5.6267 0.0495 34 1 0.5967 -5.1451 0.9408 35 1 3.3812 -2.9374 2.2394 36 1 4.1193 -4.0312 0.9881 37 1 0.9727 -3.7238 3.0985 38 1 2.2486 -4.3352 4.1795 39 1 -0.0186 -5.9447 2.9170 40 1 0.2076 -5.5822 4.6476 41 1 1.8118 -10.6729 3.7752 42 1 3.0573 -8.2037 3.0217 43 1 1.8232 -7.6388 1.8662 44 1 3.8746 -6.4059 1.4349 45 1 4.0314 -5.9819 3.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050508009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:02 Heat of formation + Delta-G solvation = 58.023072 kcal Electronic energy + Delta-G solvation = -26566.698897 eV Core-core repulsion = 22971.899476 eV Total energy + Delta-G solvation = -3594.799421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.14612 -40.16284 -38.24643 -35.94237 -33.64058 -32.89818 -32.15035 -30.64055 -29.84176 -27.95048 -26.95555 -26.37577 -24.67688 -23.89861 -22.51143 -22.30852 -21.00233 -19.76616 -18.13330 -17.66677 -16.97287 -16.52227 -16.19236 -15.52547 -15.40236 -15.02148 -14.86570 -14.59969 -14.00828 -13.80293 -13.63156 -13.61978 -13.54798 -13.12946 -12.89901 -12.76478 -12.59761 -12.18872 -11.95993 -11.81370 -11.74110 -11.46134 -11.08511 -10.79961 -10.56996 -10.43003 -10.28364 -10.18167 -10.01867 -9.91502 -9.69709 -9.65064 -9.35715 -9.18184 -8.67713 -8.51599 -6.64304 -5.83916 -3.31954 0.55481 0.79412 2.67290 2.70676 3.33208 3.41761 3.43580 3.53543 4.08724 4.13909 4.44866 4.47254 4.51509 4.57182 4.70338 4.96929 5.09629 5.12489 5.23029 5.33811 5.37931 5.38944 5.45227 5.49680 5.52622 5.57047 5.57992 5.71333 5.82846 5.92279 6.01003 6.01560 6.14797 6.21123 6.35189 6.38392 6.50873 6.53995 6.60179 6.76631 6.91224 7.25730 7.56675 7.62203 7.64594 7.76725 8.01288 8.44168 9.17810 9.79238 10.38011 11.24297 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.002926 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.654515 B = 9566.236797 C = 9762.756894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 C 0.092 3.908 4 N -0.470 5.470 5 C 0.086 3.914 6 C -0.136 4.136 7 C -0.082 4.082 8 C 0.577 3.423 9 O -0.532 6.532 10 N -0.630 5.630 11 C 0.119 3.881 12 C -0.072 4.072 13 C 0.099 3.901 14 C -0.108 4.108 15 C 0.147 3.853 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.127 4.127 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.084 0.916 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 17.156 -7.479 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 C -0.065 4.065 4 N -0.178 5.178 5 C -0.070 4.070 6 C -0.156 4.156 7 C -0.093 4.093 8 C 0.367 3.633 9 O -0.410 6.410 10 N -0.364 5.364 11 C -0.002 4.002 12 C -0.073 4.073 13 C -0.024 4.024 14 C -0.148 4.148 15 C 0.020 3.980 16 N -0.312 5.312 17 C -0.386 4.386 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.048 3.952 26 C -0.167 4.167 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.158 0.842 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.406 17.852 -7.919 20.021 hybrid contribution -0.015 -1.337 0.676 1.498 sum 4.392 16.516 -7.243 18.561 Atomic orbital electron populations 1.21105 0.89357 1.04799 1.03741 1.21077 0.98307 0.92450 0.96655 1.22712 0.89770 0.97302 0.96733 1.67536 1.08297 1.31810 1.10194 1.22707 1.00509 0.87213 0.96597 1.22401 0.93810 1.00296 0.99096 1.20229 0.93954 0.93765 1.01364 1.17824 0.84613 0.82730 0.78177 1.90703 1.22042 1.83639 1.44596 1.50042 1.28431 1.09541 1.48379 1.23355 1.01972 0.78830 0.96032 1.21980 0.95914 0.94885 0.94555 1.23590 0.89398 0.98236 0.91146 1.21775 0.98411 0.99074 0.95507 1.20893 0.91718 0.86787 0.98553 1.43952 1.44188 1.28201 1.14876 1.19177 1.45567 0.88397 0.85458 0.91936 1.25168 1.00804 0.96598 0.96622 1.70010 1.52342 1.07927 1.24120 0.86249 0.77685 0.79866 0.83112 1.20204 1.21657 1.21539 1.20618 0.91612 0.93365 0.89629 1.22074 0.98288 0.96023 1.00330 0.90780 0.91228 0.87767 0.82209 0.82199 0.84246 0.89507 0.89633 0.90186 0.89549 0.93045 0.91708 0.96347 0.92590 0.93630 0.89756 0.96265 0.92771 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.49 36.00 0.34 -1.05 16 2 C -0.08 -0.93 5.93 -104.07 -0.62 -1.55 16 3 C 0.09 0.93 10.84 -17.59 -0.19 0.74 16 4 N -0.47 -5.15 10.34 -13.30 -0.14 -5.28 16 5 C 0.09 0.82 11.17 -17.60 -0.20 0.62 16 6 C -0.14 -1.36 9.03 -39.03 -0.35 -1.72 16 7 C -0.08 -1.01 5.76 -104.65 -0.60 -1.61 16 8 C 0.58 8.45 7.52 -12.19 -0.09 8.36 16 9 O -0.53 -9.29 14.91 5.34 0.08 -9.21 16 10 N -0.63 -8.57 3.42 -181.24 -0.62 -9.19 16 11 C 0.12 1.75 7.63 -3.15 -0.02 1.73 16 12 C -0.07 -1.05 0.77 -154.42 -0.12 -1.17 16 13 C 0.10 1.13 5.85 -3.16 -0.02 1.11 16 14 C -0.11 -1.74 5.21 -26.72 -0.14 -1.88 16 15 C 0.15 2.93 6.38 -3.66 -0.02 2.91 16 16 N -0.59 -13.90 2.94 -172.50 -0.51 -14.40 16 17 C -0.26 -6.75 9.52 -15.06 -0.14 -6.89 16 18 H 0.06 1.64 7.87 -52.49 -0.41 1.22 16 19 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 20 N -0.90 -25.24 11.35 55.49 0.63 -24.61 16 21 Si 0.90 21.02 29.58 -169.99 -5.03 15.99 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.17 3.77 5.16 -3.91 -0.02 3.75 16 26 C -0.13 -2.07 5.24 -26.97 -0.14 -2.21 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 29 H 0.10 1.35 5.46 -51.93 -0.28 1.07 16 30 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.14 1.16 6.53 -52.48 -0.34 0.82 16 33 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.09 1.40 7.41 -51.93 -0.38 1.01 16 35 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.09 0.81 7.82 -51.93 -0.41 0.41 16 37 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 40 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 2.09 6.24 -51.93 -0.32 1.77 16 43 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -30.91 358.32 -9.32 -40.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.72 Total: -0.18 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.42 Total: 1.25 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.63 Total: -53.49 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.91 -9.32 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050508009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.258 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds