Wall clock time and date at job start Tue Mar 31 2020 11:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 120.49758 * 2 1 4 4 N 1.31801 * 120.89328 * 180.28708 * 3 2 1 5 5 C 1.31825 * 122.04789 * 359.73324 * 4 3 2 6 6 C 1.38125 * 120.89756 * 0.02562 * 5 4 3 7 7 C 1.39794 * 120.50201 * 179.76625 * 2 1 3 8 8 C 1.48146 * 120.92218 * 359.97438 * 7 2 1 9 9 O 1.21524 * 119.99880 * 33.94380 * 8 7 2 10 10 N 1.34774 * 120.00274 * 213.94185 * 8 7 2 11 11 C 1.47663 * 134.45646 * 184.70722 * 10 8 7 12 12 C 1.53513 * 85.97743 * 204.28838 * 11 10 8 13 13 C 1.47668 * 134.45654 * 4.66303 * 10 8 7 14 14 C 1.52672 * 113.57314 * 91.01250 * 12 11 10 15 15 C 1.53341 * 109.11335 * 73.81480 * 14 12 11 16 16 N 1.46881 * 108.76031 * 52.40611 * 15 14 12 17 17 C 1.36941 * 120.46816 * 124.47126 * 16 15 14 18 18 H 1.07997 * 119.99434 * 326.95253 * 17 16 15 19 19 C 1.38808 * 119.99844 * 147.22602 * 17 16 15 20 20 N 1.31615 * 120.00416 * 345.73077 * 19 17 16 21 21 Si 1.86799 * 119.99495 * 165.73432 * 19 17 16 22 22 H 1.48494 * 109.47366 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47129 * 119.99990 * 21 19 17 24 24 H 1.48505 * 109.46880 * 239.99532 * 21 19 17 25 25 C 1.46885 * 119.06861 * 304.74582 * 16 15 14 26 26 C 1.52669 * 113.56506 * 222.23081 * 12 11 10 27 27 H 1.09003 * 109.47453 * 264.43888 * 1 2 3 28 28 H 1.09005 * 109.47546 * 24.44125 * 1 2 3 29 29 H 1.09004 * 109.47354 * 144.44289 * 1 2 3 30 30 H 1.08000 * 119.55371 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.55007 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.49463 * 179.97438 * 6 5 4 33 33 H 1.08997 * 113.79687 * 90.02603 * 11 10 8 34 34 H 1.08998 * 113.79066 * 318.55235 * 11 10 8 35 35 H 1.09007 * 113.78449 * 41.44783 * 13 10 8 36 36 H 1.08991 * 113.79583 * 269.97381 * 13 10 8 37 37 H 1.08996 * 109.53198 * 313.92600 * 14 12 11 38 38 H 1.08998 * 109.59192 * 193.74645 * 14 12 11 39 39 H 1.08996 * 109.58845 * 292.62742 * 15 14 12 40 40 H 1.09000 * 109.58804 * 172.18829 * 15 14 12 41 41 H 0.96997 * 119.99962 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.59190 * 175.04256 * 25 16 15 43 43 H 1.08998 * 109.58901 * 295.47410 * 25 16 15 44 44 H 1.09002 * 109.53197 * 46.07535 * 26 12 11 45 45 H 1.09003 * 109.53182 * 166.22004 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5262 1.1997 -0.0057 5 6 4.2334 0.0872 -0.0063 6 6 3.6137 -1.1472 -0.0016 7 6 2.2165 -1.2045 0.0049 8 6 1.5079 -2.5055 0.0108 9 8 0.4503 -2.6240 -0.5760 10 7 2.0361 -3.5576 0.6668 11 6 1.6659 -4.9801 0.8081 12 6 2.4548 -4.9429 2.1245 13 6 3.2174 -3.7501 1.5317 14 6 1.6014 -4.5814 3.3377 15 6 0.7169 -5.7791 3.7042 16 7 1.5666 -6.9692 3.8423 17 6 1.5536 -7.7012 4.9995 18 1 1.3933 -7.2095 5.9476 19 6 1.7521 -9.0743 4.9545 20 7 1.6727 -9.7135 3.8067 21 14 2.1318 -10.0150 6.5230 22 1 2.1661 -9.0721 7.6697 23 1 1.0801 -11.0376 6.7538 24 1 3.4516 -10.6831 6.3923 25 6 2.4351 -7.3597 2.7239 26 6 3.3266 -6.1760 2.3487 27 1 -0.3634 -0.0996 1.0228 28 1 -0.3634 0.9356 -0.4252 29 1 -0.3634 -0.8361 -0.5976 30 1 1.6690 2.1264 -0.0004 31 1 5.3120 0.1417 -0.0107 32 1 4.1995 -2.0546 -0.0026 33 1 2.1068 -5.6267 0.0495 34 1 0.5967 -5.1451 0.9408 35 1 3.3812 -2.9374 2.2394 36 1 4.1193 -4.0312 0.9881 37 1 0.9727 -3.7238 3.0985 38 1 2.2486 -4.3352 4.1795 39 1 -0.0186 -5.9447 2.9170 40 1 0.2076 -5.5822 4.6476 41 1 1.8118 -10.6729 3.7752 42 1 3.0573 -8.2037 3.0217 43 1 1.8232 -7.6388 1.8662 44 1 3.8746 -6.4059 1.4349 45 1 4.0314 -5.9819 3.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050508009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:01 Heat of formation + Delta-G solvation = 39.762914 kcal Electronic energy + Delta-G solvation = -26567.490717 eV Core-core repulsion = 22971.899476 eV Total energy + Delta-G solvation = -3595.591241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17303 -41.11138 -39.40297 -37.53085 -34.46938 -34.36693 -33.29874 -32.11574 -31.41153 -29.05942 -28.08447 -27.42658 -26.10811 -25.08621 -23.96326 -23.17538 -22.56711 -20.82676 -19.58693 -18.71177 -18.15687 -17.85400 -17.24239 -16.83795 -16.56900 -16.22263 -15.87631 -15.67096 -15.47595 -15.29930 -14.90759 -14.85647 -14.54212 -14.34168 -14.04574 -13.88669 -13.67555 -13.35670 -13.33210 -13.01763 -12.98725 -12.84442 -12.61006 -12.55443 -12.26542 -12.00627 -11.83873 -11.49289 -11.34906 -11.24497 -11.00268 -10.84511 -10.52616 -10.36719 -9.94189 -9.77039 -8.57573 -7.85707 -5.36798 -0.29394 0.06791 1.46845 1.49463 1.59318 1.62971 1.68377 2.52059 2.76016 3.13696 3.26142 3.40401 3.48236 3.69094 3.75734 3.81205 3.85391 3.95605 3.99867 4.20527 4.29626 4.40630 4.46457 4.51804 4.56909 4.60931 4.68432 4.71088 4.72065 4.80125 4.81362 4.86180 4.92764 5.03342 5.12074 5.13303 5.18448 5.32481 5.34346 5.36351 5.54190 5.62013 5.68368 5.81350 6.44408 6.58530 6.89121 6.92938 7.19345 7.88592 8.41420 9.19629 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.002926 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.654515 B = 9566.236797 C = 9762.756894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C 0.093 3.907 4 N -0.486 5.486 5 C 0.089 3.911 6 C -0.130 4.130 7 C -0.102 4.102 8 C 0.574 3.426 9 O -0.572 6.572 10 N -0.629 5.629 11 C 0.115 3.885 12 C -0.074 4.074 13 C 0.117 3.883 14 C -0.094 4.094 15 C 0.144 3.856 16 N -0.607 5.607 17 C -0.264 4.264 18 H 0.061 0.939 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.178 3.822 26 C -0.111 4.111 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.005 0.995 40 H 0.049 0.951 41 H 0.250 0.750 42 H 0.049 0.951 43 H -0.004 1.004 44 H 0.083 0.917 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 19.433 -7.359 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C -0.064 4.064 4 N -0.195 5.195 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.113 4.113 8 C 0.364 3.636 9 O -0.452 6.452 10 N -0.362 5.362 11 C -0.007 4.007 12 C -0.075 4.075 13 C -0.004 4.004 14 C -0.133 4.133 15 C 0.019 3.981 16 N -0.331 5.331 17 C -0.394 4.394 18 H 0.079 0.921 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.053 3.947 26 C -0.150 4.150 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.202 0.798 31 H 0.210 0.790 32 H 0.178 0.822 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.014 0.986 44 H 0.102 0.898 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.832 20.163 -7.787 22.669 hybrid contribution -0.833 -2.036 0.626 2.288 sum 5.999 18.127 -7.161 20.392 Atomic orbital electron populations 1.21031 0.89382 1.04896 1.03275 1.21224 0.98544 0.92793 0.97284 1.23055 0.89766 0.97733 0.95812 1.67617 1.08610 1.32631 1.10593 1.23248 1.01946 0.86495 0.95050 1.22605 0.92722 1.01505 0.98176 1.20201 0.95105 0.92636 1.03324 1.18244 0.84222 0.83573 0.77526 1.90691 1.23862 1.84353 1.46341 1.50052 1.29065 1.08754 1.48332 1.23320 1.00601 0.80145 0.96646 1.21865 0.96134 0.95838 0.93685 1.23663 0.89293 0.96699 0.90793 1.21562 0.98066 0.97113 0.96558 1.20969 0.92021 0.87280 0.97866 1.44217 1.45409 1.28862 1.14599 1.19467 1.44598 0.88897 0.86482 0.92135 1.25872 1.01375 0.97455 0.99312 1.70159 1.53854 1.07775 1.25965 0.85264 0.77008 0.78392 0.80099 1.19128 1.22224 1.21424 1.20462 0.91334 0.94796 0.88115 1.21837 0.97386 0.94061 1.01708 0.90936 0.88737 0.90593 0.79839 0.79037 0.82211 0.88364 0.92286 0.88405 0.86069 0.92168 0.91116 0.97691 0.93278 0.94104 0.93227 0.98570 0.89815 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.49 71.23 0.68 -1.95 16 2 C -0.10 -2.02 5.93 -19.50 -0.12 -2.13 16 3 C 0.09 1.65 10.84 84.68 0.92 2.57 16 4 N -0.49 -9.11 10.34 -196.00 -2.03 -11.14 16 5 C 0.09 1.34 11.17 84.67 0.95 2.29 16 6 C -0.13 -2.15 9.03 22.63 0.20 -1.94 16 7 C -0.10 -2.31 5.76 -19.88 -0.11 -2.42 16 8 C 0.57 16.25 7.52 86.88 0.65 16.91 16 9 O -0.57 -20.37 14.91 -3.79 -0.06 -20.43 16 10 N -0.63 -15.90 3.42 -845.61 -2.89 -18.78 16 11 C 0.11 3.28 7.63 86.32 0.66 3.93 16 12 C -0.07 -2.00 0.77 -52.03 -0.04 -2.04 16 13 C 0.12 2.21 5.85 86.31 0.50 2.71 16 14 C -0.09 -2.91 5.21 30.60 0.16 -2.75 16 15 C 0.14 5.86 6.38 86.42 0.55 6.41 16 16 N -0.61 -29.19 2.94 -699.68 -2.06 -31.25 16 17 C -0.26 -14.14 9.52 84.03 0.80 -13.34 16 18 H 0.06 3.20 7.87 -2.91 -0.02 3.18 16 19 C -0.04 -2.41 4.94 84.86 0.42 -1.99 16 20 N -0.93 -53.88 11.35 21.65 0.25 -53.63 16 21 Si 0.96 43.82 29.58 68.60 2.03 45.85 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 C 0.18 7.88 5.16 86.26 0.44 8.33 16 26 C -0.11 -3.38 5.24 30.44 0.16 -3.22 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.36 8.06 -2.38 -0.02 1.34 16 29 H 0.08 2.03 5.46 -2.39 -0.01 2.02 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.16 1.89 6.53 -2.91 -0.02 1.87 16 33 H 0.10 2.57 8.07 -2.39 -0.02 2.56 16 34 H 0.06 1.99 7.41 -2.39 -0.02 1.97 16 35 H 0.10 1.60 8.09 -2.38 -0.02 1.58 16 36 H 0.12 1.57 7.82 -2.39 -0.02 1.55 16 37 H 0.06 1.77 8.01 -2.39 -0.02 1.75 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.01 0.22 7.49 -2.39 -0.02 0.20 16 40 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.05 2.53 6.24 -2.39 -0.01 2.51 16 43 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 44 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.16 358.32 3.06 -67.11 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.99 Total: 10.92 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.83 Total: 11.36 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -6.73 Total: -114.81 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.16 3.06 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050508009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.871 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds