Wall clock time and date at job start Tue Mar 31 2020 11:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38608 * 120.32122 * 2 1 4 4 N 1.31492 * 120.89874 * 179.97438 * 3 2 1 5 5 C 1.32749 * 121.64703 * 0.02562 * 4 3 2 6 6 C 1.48166 * 119.72283 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99673 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00076 * 359.97438 * 6 5 4 9 9 C 1.47797 * 135.01288 * 0.02562 * 8 6 5 10 10 C 1.54649 * 85.79272 * 153.76908 * 9 8 6 11 11 H 1.09000 * 114.44192 * 140.42179 * 10 9 8 12 12 C 1.53012 * 110.83497 * 270.22944 * 10 9 8 13 13 C 1.53107 * 109.44575 * 143.88776 * 12 10 9 14 14 N 1.46620 * 108.00800 * 301.02413 * 13 12 10 15 15 C 1.36938 * 119.88923 * 237.32958 * 14 13 12 16 16 H 1.07998 * 120.00189 * 24.87341 * 15 14 13 17 17 C 1.38811 * 119.99565 * 204.86898 * 15 14 13 18 18 N 1.31620 * 120.00182 * 14.85979 * 17 15 14 19 19 Si 1.86799 * 119.99835 * 194.85649 * 17 15 14 20 20 H 1.48501 * 109.47230 * 60.00297 * 19 17 15 21 21 H 1.48499 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47504 * 300.00325 * 19 17 15 23 23 C 1.45324 * 119.57098 * 58.80740 * 14 13 12 24 24 C 1.48752 * 135.02207 * 179.85537 * 8 6 5 25 25 H 1.09004 * 111.44896 * 94.82955 * 24 8 6 26 26 C 1.39267 * 120.54977 * 0.27121 * 5 4 3 27 27 C 1.38577 * 120.32817 * 179.97438 * 2 1 3 28 28 C 1.50703 * 120.75489 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47535 * 90.00156 * 1 2 3 30 30 H 1.09003 * 109.46872 * 210.00420 * 1 2 3 31 31 H 1.09001 * 109.47189 * 329.99881 * 1 2 3 32 32 H 1.08002 * 119.54778 * 359.95487 * 3 2 1 33 33 H 1.09001 * 113.82708 * 39.55094 * 9 8 6 34 34 H 1.09003 * 113.82151 * 267.98361 * 9 8 6 35 35 H 1.08995 * 109.47691 * 23.89191 * 12 10 9 36 36 H 1.08998 * 109.47590 * 263.87867 * 12 10 9 37 37 H 1.09001 * 109.75581 * 60.65194 * 13 12 10 38 38 H 1.08999 * 109.75338 * 181.39858 * 13 12 10 39 39 H 0.96999 * 119.99711 * 179.97438 * 18 17 15 40 40 H 1.08999 * 107.70286 * 198.51435 * 23 14 13 41 41 H 1.09001 * 109.96395 * 80.37361 * 23 14 13 42 42 H 1.08004 * 120.46761 * 179.70490 * 26 5 4 43 43 H 1.08997 * 109.47312 * 89.99578 * 28 27 2 44 44 H 1.09002 * 109.46842 * 209.99934 * 28 27 2 45 45 H 1.09000 * 109.47096 * 329.99538 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5216 1.2097 0.0005 5 6 4.2295 0.0867 0.0005 6 6 5.7097 0.1514 0.0017 7 8 6.3626 -0.8735 0.0012 8 7 6.3321 1.3469 0.0022 9 6 5.8879 2.7566 0.0023 10 6 7.2413 3.0640 0.6846 11 1 7.7215 3.9803 0.3415 12 6 7.1156 2.9764 2.2070 13 6 8.4054 2.3949 2.7924 14 7 8.6124 1.0681 2.2037 15 6 8.7233 -0.0290 3.0157 16 1 8.2788 -0.0195 3.9999 17 6 9.4069 -1.1533 2.5736 18 7 10.1894 -1.0751 1.5182 19 14 9.2162 -2.7773 3.4767 20 1 7.7905 -3.1922 3.4536 21 1 10.0448 -3.8142 2.8107 22 1 9.6622 -2.6166 4.8840 23 6 8.7306 0.9339 0.7615 24 6 7.7506 1.7948 0.0059 25 1 8.1080 1.9951 -1.0042 26 6 3.5924 -1.1516 -0.0057 27 6 2.2068 -1.1961 0.0005 28 6 1.4781 -2.5153 0.0017 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6646 2.1306 -0.0007 33 1 5.0221 2.9454 0.6370 34 1 5.7895 3.1872 -0.9942 35 1 6.2759 2.3314 2.4658 36 1 6.9479 3.9728 2.6158 37 1 9.2466 3.0427 2.5459 38 1 8.3119 2.3071 3.8748 39 1 10.6674 -1.8607 1.2096 40 1 8.5457 -0.1103 0.5095 41 1 9.7408 1.1937 0.4451 42 1 4.1696 -2.0645 -0.0104 43 1 1.3019 -2.8340 -1.0256 44 1 2.0816 -3.2633 0.5158 45 1 0.5236 -2.4026 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084536402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:09 Heat of formation + Delta-G solvation = 64.797224 kcal Electronic energy + Delta-G solvation = -27232.774278 eV Core-core repulsion = 23638.268606 eV Total energy + Delta-G solvation = -3594.505672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.67601 -39.79491 -37.40869 -35.13215 -34.61248 -32.42033 -32.02895 -30.06353 -29.31224 -28.36660 -27.11876 -26.64983 -23.77989 -23.29377 -22.78067 -22.08269 -20.86242 -19.62242 -17.89254 -17.25103 -16.75091 -16.03001 -15.61273 -15.23096 -15.13934 -14.85695 -14.53735 -14.14557 -13.75089 -13.48406 -13.24152 -13.15091 -13.09841 -13.00020 -12.86481 -12.60554 -12.39638 -12.20011 -12.12476 -11.79504 -11.59183 -11.37201 -10.97952 -10.60532 -10.57046 -10.39020 -10.13108 -9.96548 -9.74641 -9.72951 -9.50741 -9.33092 -8.93132 -8.88972 -8.25512 -7.96052 -6.56089 -5.60674 -3.01326 0.76266 1.20492 3.14236 3.30048 3.50408 3.56191 3.59290 4.08454 4.24458 4.51824 4.61153 4.65360 4.73783 4.76446 4.90634 5.15054 5.22342 5.32815 5.37621 5.38845 5.46073 5.54269 5.57695 5.59900 5.65073 5.78355 5.80142 5.84818 5.90209 5.95735 6.10344 6.20321 6.23726 6.33684 6.40387 6.50858 6.60576 6.66358 6.70934 6.88034 7.09334 7.54783 7.80172 7.84942 7.99015 8.39252 8.62737 8.80458 9.41090 10.05033 10.53986 11.47552 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.004965 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.969958 B = 5638.185157 C = 7017.631066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C 0.096 3.904 4 N -0.455 5.455 5 C 0.094 3.906 6 C 0.584 3.416 7 O -0.515 6.515 8 N -0.612 5.612 9 C 0.114 3.886 10 C -0.116 4.116 11 H 0.084 0.916 12 C -0.115 4.115 13 C 0.144 3.856 14 N -0.583 5.583 15 C -0.251 4.251 16 H 0.063 0.937 17 C 0.010 3.990 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.165 3.835 24 C 0.126 3.874 25 H 0.075 0.925 26 C -0.112 4.112 27 C -0.053 4.053 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.032 0.968 42 H 0.147 0.853 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 6.588 -5.412 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.133 4.133 3 C -0.064 4.064 4 N -0.166 5.166 5 C -0.044 4.044 6 C 0.371 3.629 7 O -0.390 6.390 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.135 4.135 11 H 0.102 0.898 12 C -0.154 4.154 13 C 0.018 3.982 14 N -0.305 5.305 15 C -0.381 4.381 16 H 0.081 0.919 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.038 3.962 24 C 0.023 3.977 25 H 0.092 0.908 26 C -0.133 4.133 27 C -0.061 4.061 28 C -0.174 4.174 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.050 0.950 42 H 0.165 0.835 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.992 6.450 -5.490 19.886 hybrid contribution -0.635 -1.592 0.260 1.734 sum -18.627 4.858 -5.230 19.948 Atomic orbital electron populations 1.20780 0.90252 1.03231 1.02568 1.20944 0.97480 0.93747 1.01110 1.22668 0.89677 0.97315 0.96737 1.67711 1.08071 1.30388 1.10421 1.21401 0.94753 0.89235 0.98988 1.17353 0.84899 0.82790 0.77861 1.90855 1.65298 1.33050 1.49787 1.50083 1.09455 1.04222 1.70948 1.23462 0.97927 0.79820 0.99670 1.22885 0.96073 0.97499 0.97037 0.89750 1.21831 1.01179 0.99570 0.92849 1.20782 0.93148 0.87884 0.96435 1.43423 1.84250 1.01675 1.01164 1.19053 1.28067 0.92304 0.98645 0.91894 1.24900 0.96705 0.98996 0.98235 1.69989 1.29712 1.28560 1.26656 0.86381 0.77610 0.84101 0.78710 1.21146 1.21665 1.21192 1.20031 0.92600 1.00759 0.82795 1.23129 0.83268 0.92406 0.98857 0.90755 1.22051 0.94051 0.99438 0.97750 1.20158 0.93239 0.95737 0.96971 1.20868 1.00331 0.93262 1.02915 0.90819 0.90975 0.91136 0.82558 0.89516 0.91018 0.92126 0.92839 0.96254 0.92686 0.93751 0.87572 0.95019 0.83533 0.90465 0.90747 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.65 36.01 0.35 -0.41 16 2 C -0.13 -1.41 5.91 -104.36 -0.62 -2.02 16 3 C 0.10 1.15 10.86 -17.56 -0.19 0.95 16 4 N -0.45 -7.04 7.93 -9.80 -0.08 -7.11 16 5 C 0.09 1.69 6.75 -83.01 -0.56 1.13 16 6 C 0.58 12.77 8.00 -12.18 -0.10 12.68 16 7 O -0.52 -13.41 15.61 5.35 0.08 -13.32 16 8 N -0.61 -12.23 3.40 -172.50 -0.59 -12.82 16 9 C 0.11 1.77 7.01 -2.57 -0.02 1.75 16 10 C -0.12 -1.91 4.34 -89.98 -0.39 -2.30 16 11 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 12 C -0.11 -2.05 5.66 -26.67 -0.15 -2.20 16 13 C 0.14 3.10 6.44 -3.92 -0.03 3.07 16 14 N -0.58 -15.37 3.00 -175.36 -0.53 -15.89 16 15 C -0.25 -7.36 9.56 -15.06 -0.14 -7.51 16 16 H 0.06 1.82 7.84 -52.49 -0.41 1.41 16 17 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 18 N -0.90 -27.87 10.92 55.49 0.61 -27.27 16 19 Si 0.90 23.68 29.58 -169.99 -5.03 18.65 16 20 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.16 4.22 4.68 -5.80 -0.03 4.19 16 24 C 0.13 2.56 4.30 -68.09 -0.29 2.27 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 C -0.11 -1.79 9.34 -39.05 -0.36 -2.15 16 27 C -0.05 -0.65 5.91 -104.35 -0.62 -1.27 16 28 C -0.12 -1.04 9.67 36.01 0.35 -0.69 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.43 6.06 -51.93 -0.31 0.12 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.21 7.69 -51.93 -0.40 0.81 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 39 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.11 3.19 4.89 -51.93 -0.25 2.93 16 41 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 42 H 0.15 2.42 7.64 -52.48 -0.40 2.02 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.07 0.52 6.07 -51.93 -0.32 0.20 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -35.43 357.46 -9.67 -45.10 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.64 Total: -0.43 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.89 Total: 7.71 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.58 Total: -63.09 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.03 Total: 18.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.43 -9.67 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084536402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.901 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds