Wall clock time and date at job start Tue Mar 31 2020 11:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38608 * 120.32122 * 2 1 4 4 N 1.31492 * 120.89874 * 179.97438 * 3 2 1 5 5 C 1.32749 * 121.64703 * 0.02562 * 4 3 2 6 6 C 1.48166 * 119.72283 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99673 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00076 * 359.97438 * 6 5 4 9 9 C 1.47797 * 135.01288 * 0.02562 * 8 6 5 10 10 C 1.54649 * 85.79272 * 153.76908 * 9 8 6 11 11 H 1.09000 * 114.44192 * 140.42179 * 10 9 8 12 12 C 1.53012 * 110.83497 * 270.22944 * 10 9 8 13 13 C 1.53107 * 109.44575 * 143.88776 * 12 10 9 14 14 N 1.46620 * 108.00800 * 301.02413 * 13 12 10 15 15 C 1.36938 * 119.88923 * 237.32958 * 14 13 12 16 16 H 1.07998 * 120.00189 * 24.87341 * 15 14 13 17 17 C 1.38811 * 119.99565 * 204.86898 * 15 14 13 18 18 N 1.31620 * 120.00182 * 14.85979 * 17 15 14 19 19 Si 1.86799 * 119.99835 * 194.85649 * 17 15 14 20 20 H 1.48501 * 109.47230 * 60.00297 * 19 17 15 21 21 H 1.48499 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47504 * 300.00325 * 19 17 15 23 23 C 1.45324 * 119.57098 * 58.80740 * 14 13 12 24 24 C 1.48752 * 135.02207 * 179.85537 * 8 6 5 25 25 H 1.09004 * 111.44896 * 94.82955 * 24 8 6 26 26 C 1.39267 * 120.54977 * 0.27121 * 5 4 3 27 27 C 1.38577 * 120.32817 * 179.97438 * 2 1 3 28 28 C 1.50703 * 120.75489 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47535 * 90.00156 * 1 2 3 30 30 H 1.09003 * 109.46872 * 210.00420 * 1 2 3 31 31 H 1.09001 * 109.47189 * 329.99881 * 1 2 3 32 32 H 1.08002 * 119.54778 * 359.95487 * 3 2 1 33 33 H 1.09001 * 113.82708 * 39.55094 * 9 8 6 34 34 H 1.09003 * 113.82151 * 267.98361 * 9 8 6 35 35 H 1.08995 * 109.47691 * 23.89191 * 12 10 9 36 36 H 1.08998 * 109.47590 * 263.87867 * 12 10 9 37 37 H 1.09001 * 109.75581 * 60.65194 * 13 12 10 38 38 H 1.08999 * 109.75338 * 181.39858 * 13 12 10 39 39 H 0.96999 * 119.99711 * 179.97438 * 18 17 15 40 40 H 1.08999 * 107.70286 * 198.51435 * 23 14 13 41 41 H 1.09001 * 109.96395 * 80.37361 * 23 14 13 42 42 H 1.08004 * 120.46761 * 179.70490 * 26 5 4 43 43 H 1.08997 * 109.47312 * 89.99578 * 28 27 2 44 44 H 1.09002 * 109.46842 * 209.99934 * 28 27 2 45 45 H 1.09000 * 109.47096 * 329.99538 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5216 1.2097 0.0005 5 6 4.2295 0.0867 0.0005 6 6 5.7097 0.1514 0.0017 7 8 6.3626 -0.8735 0.0012 8 7 6.3321 1.3469 0.0022 9 6 5.8879 2.7566 0.0023 10 6 7.2413 3.0640 0.6846 11 1 7.7215 3.9803 0.3415 12 6 7.1156 2.9764 2.2070 13 6 8.4054 2.3949 2.7924 14 7 8.6124 1.0681 2.2037 15 6 8.7233 -0.0290 3.0157 16 1 8.2788 -0.0195 3.9999 17 6 9.4069 -1.1533 2.5736 18 7 10.1894 -1.0751 1.5182 19 14 9.2162 -2.7773 3.4767 20 1 7.7905 -3.1922 3.4536 21 1 10.0448 -3.8142 2.8107 22 1 9.6622 -2.6166 4.8840 23 6 8.7306 0.9339 0.7615 24 6 7.7506 1.7948 0.0059 25 1 8.1080 1.9951 -1.0042 26 6 3.5924 -1.1516 -0.0057 27 6 2.2068 -1.1961 0.0005 28 6 1.4781 -2.5153 0.0017 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6646 2.1306 -0.0007 33 1 5.0221 2.9454 0.6370 34 1 5.7895 3.1872 -0.9942 35 1 6.2759 2.3314 2.4658 36 1 6.9479 3.9728 2.6158 37 1 9.2466 3.0427 2.5459 38 1 8.3119 2.3071 3.8748 39 1 10.6674 -1.8607 1.2096 40 1 8.5457 -0.1103 0.5095 41 1 9.7408 1.1937 0.4451 42 1 4.1696 -2.0645 -0.0104 43 1 1.3019 -2.8340 -1.0256 44 1 2.0816 -3.2633 0.5158 45 1 0.5236 -2.4026 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084536402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:07 Heat of formation + Delta-G solvation = 41.072249 kcal Electronic energy + Delta-G solvation = -27233.803070 eV Core-core repulsion = 23638.268606 eV Total energy + Delta-G solvation = -3595.534464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96321 -41.10554 -39.03757 -37.03477 -35.60818 -33.96603 -33.39627 -31.94317 -30.85678 -29.33576 -28.66677 -27.80864 -25.70526 -24.77069 -23.75860 -23.40819 -22.54714 -21.01920 -19.59794 -18.82995 -17.88425 -17.72195 -17.29807 -16.84859 -16.23867 -16.17361 -15.85544 -15.66635 -15.45239 -15.03685 -14.84095 -14.49563 -14.36161 -13.99950 -13.86869 -13.74337 -13.72274 -13.52464 -13.41474 -13.16193 -12.78259 -12.71255 -12.66926 -12.48713 -12.35894 -12.24825 -12.01320 -11.75429 -11.50058 -11.38424 -10.85332 -10.56341 -10.52245 -10.27036 -9.96331 -9.49193 -8.71295 -7.86904 -5.29411 -0.36549 0.19761 1.32971 1.40928 1.44285 1.80691 1.85188 2.46902 2.83221 3.06835 3.29025 3.48135 3.58917 3.71865 3.73115 3.86061 3.90898 3.97128 4.15311 4.23050 4.43486 4.46071 4.55996 4.59903 4.62610 4.66922 4.70251 4.73433 4.75733 4.88440 4.91557 4.94792 5.02120 5.05747 5.09188 5.13849 5.24085 5.32198 5.36356 5.40956 5.54299 5.68455 5.71672 5.79932 6.38269 6.71687 6.88113 7.17273 7.23567 7.94124 8.34105 9.17688 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.004965 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.969958 B = 5638.185157 C = 7017.631066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.112 4.112 3 C 0.094 3.906 4 N -0.463 5.463 5 C 0.061 3.939 6 C 0.569 3.431 7 O -0.583 6.583 8 N -0.619 5.619 9 C 0.130 3.870 10 C -0.101 4.101 11 H 0.129 0.871 12 C -0.103 4.103 13 C 0.137 3.863 14 N -0.601 5.601 15 C -0.260 4.260 16 H 0.061 0.939 17 C -0.045 4.045 18 N -0.932 5.932 19 Si 0.957 3.043 20 H -0.294 1.294 21 H -0.291 1.291 22 H -0.265 1.265 23 C 0.179 3.821 24 C 0.110 3.890 25 H 0.093 0.907 26 C -0.133 4.133 27 C -0.057 4.057 28 C -0.116 4.116 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.199 0.801 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.034 0.966 36 H 0.100 0.900 37 H 0.031 0.969 38 H 0.051 0.949 39 H 0.245 0.755 40 H 0.054 0.946 41 H 0.002 0.998 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.042 9.481 -5.336 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.066 4.066 4 N -0.175 5.175 5 C -0.075 4.075 6 C 0.358 3.642 7 O -0.463 6.463 8 N -0.352 5.352 9 C 0.009 3.991 10 C -0.120 4.120 11 H 0.147 0.853 12 C -0.142 4.142 13 C 0.012 3.988 14 N -0.324 5.324 15 C -0.390 4.390 16 H 0.079 0.921 17 C -0.241 4.241 18 N -0.578 5.578 19 Si 0.785 3.215 20 H -0.222 1.222 21 H -0.217 1.217 22 H -0.190 1.190 23 C 0.053 3.947 24 C 0.007 3.993 25 H 0.111 0.889 26 C -0.154 4.154 27 C -0.064 4.064 28 C -0.172 4.172 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.216 0.784 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.053 0.947 36 H 0.119 0.881 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.139 0.861 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.191 9.420 -5.395 24.704 hybrid contribution 0.533 -2.425 0.245 2.495 sum -21.658 6.995 -5.150 23.335 Atomic orbital electron populations 1.20929 0.86547 1.04957 1.04206 1.21469 0.99881 0.92469 0.97568 1.23442 0.88532 0.99555 0.95110 1.67612 1.09784 1.29074 1.11017 1.20862 0.92746 0.90879 1.03043 1.18115 0.86777 0.82489 0.76821 1.90798 1.67204 1.35291 1.53000 1.50320 1.09442 1.05632 1.69821 1.23637 0.97455 0.76568 1.01480 1.22900 0.96408 0.96821 0.95886 0.85330 1.21709 0.97599 1.01076 0.93832 1.21020 0.95560 0.85826 0.96424 1.43660 1.84381 1.03021 1.01364 1.19363 1.27003 0.93753 0.98876 0.92096 1.25618 0.97118 1.01947 0.99377 1.70160 1.30875 1.28621 1.28177 0.85499 0.76719 0.80538 0.78708 1.22172 1.21716 1.18987 1.19627 0.92834 0.99060 0.83222 1.23120 0.82916 0.93684 0.99611 0.88899 1.22031 0.95987 0.98007 0.99407 1.20535 0.91632 0.98234 0.96025 1.20965 1.00887 0.91185 1.04164 0.88896 0.89719 0.89035 0.78401 0.88562 0.87744 0.94717 0.88124 0.95058 0.93006 0.94605 0.92761 0.98028 0.86123 0.88927 0.91703 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.65 71.24 0.69 -0.21 16 2 C -0.11 -2.01 5.91 -19.69 -0.12 -2.13 16 3 C 0.09 1.91 10.86 84.83 0.92 2.84 16 4 N -0.46 -13.64 7.93 -184.91 -1.47 -15.11 16 5 C 0.06 2.26 6.75 41.89 0.28 2.54 16 6 C 0.57 26.51 8.00 86.88 0.69 27.20 16 7 O -0.58 -33.47 15.61 -3.76 -0.06 -33.53 16 8 N -0.62 -25.13 3.40 -817.97 -2.78 -27.92 16 9 C 0.13 3.65 7.01 86.62 0.61 4.26 16 10 C -0.10 -3.06 4.34 -10.32 -0.04 -3.10 16 11 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 12 C -0.10 -3.43 5.66 30.63 0.17 -3.26 16 13 C 0.14 5.82 6.44 86.39 0.56 6.38 16 14 N -0.60 -32.96 3.00 -708.71 -2.13 -35.09 16 15 C -0.26 -15.94 9.56 84.03 0.80 -15.13 16 16 H 0.06 3.66 7.84 -2.91 -0.02 3.64 16 17 C -0.05 -2.85 4.96 84.86 0.42 -2.43 16 18 N -0.93 -61.21 10.92 21.65 0.24 -60.98 16 19 Si 0.96 51.16 29.58 68.60 2.03 53.19 16 20 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 21 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 22 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 23 C 0.18 9.73 4.68 85.87 0.40 10.13 16 24 C 0.11 4.52 4.30 43.64 0.19 4.71 16 25 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 26 C -0.13 -4.48 9.34 22.61 0.21 -4.27 16 27 C -0.06 -1.32 5.91 -19.69 -0.12 -1.43 16 28 C -0.12 -1.82 9.67 71.24 0.69 -1.13 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.55 6.06 -2.39 -0.01 0.53 16 31 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.10 2.58 6.99 -2.39 -0.02 2.57 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 2.19 7.88 -2.39 -0.02 2.17 16 39 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.05 3.53 4.89 -2.39 -0.01 3.52 16 41 H 0.00 0.12 8.03 -2.39 -0.02 0.10 16 42 H 0.12 4.53 7.64 -2.91 -0.02 4.51 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 45 H 0.10 1.03 6.07 -2.39 -0.01 1.02 16 Total: -1.00 -88.00 357.46 3.18 -84.82 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.99 Total: 9.65 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.36 Total: 24.96 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -6.14 Total: -139.09 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.06 Total: -33.53 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 2.03 Total: 53.19 kcal Total: -88.00 3.18 -84.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084536402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.891 kcal (2) G-P(sol) polarization free energy of solvation -88.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds