Wall clock time and date at job start Tue Mar 31 2020 11:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38634 * 120.46476 * 2 1 4 4 C 1.38586 * 118.48835 * 180.24030 * 3 2 1 5 5 C 1.38607 * 119.34648 * 359.50651 * 4 3 2 6 6 N 1.31496 * 120.90234 * 0.23432 * 5 4 3 7 7 C 1.32742 * 121.64443 * 0.02562 * 6 5 4 8 8 C 1.48162 * 119.72280 * 180.02562 * 7 6 5 9 9 O 1.21521 * 119.99942 * 174.23547 * 8 7 6 10 10 N 1.34777 * 120.00134 * 354.23539 * 8 7 6 11 11 C 1.47758 * 125.81709 * 179.72058 * 10 8 7 12 12 C 1.56207 * 104.00741 * 154.06048 * 11 10 8 13 13 H 1.08997 * 113.91587 * 161.25209 * 12 11 10 14 14 C 1.52869 * 106.67094 * 286.46273 * 12 11 10 15 15 C 1.51600 * 111.55982 * 168.35057 * 14 12 11 16 16 N 1.44325 * 113.11029 * 320.91477 * 15 14 12 17 17 C 1.36938 * 116.35725 * 187.25804 * 16 15 14 18 18 H 1.07998 * 120.00303 * 155.20495 * 17 16 15 19 19 C 1.38820 * 119.99766 * 335.20187 * 17 16 15 20 20 N 1.31625 * 119.99720 * 5.03380 * 19 17 16 21 21 Si 1.86793 * 120.00169 * 185.03560 * 19 17 16 22 22 H 1.48496 * 109.47192 * 59.99814 * 21 19 17 23 23 H 1.48500 * 109.47281 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47095 * 300.00085 * 21 19 17 25 25 C 1.44002 * 127.29295 * 7.27246 * 16 15 14 26 26 C 1.49958 * 116.09147 * 2.48870 * 25 16 15 27 27 H 1.08999 * 108.81969 * 141.04766 * 26 25 16 28 28 C 1.47611 * 125.82060 * 0.02562 * 10 8 7 29 29 H 1.09005 * 109.47025 * 263.45260 * 1 2 3 30 30 H 1.09003 * 109.47280 * 23.45156 * 1 2 3 31 31 H 1.09001 * 109.47349 * 143.45332 * 1 2 3 32 32 H 1.08001 * 120.75848 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.33154 * 179.77784 * 4 3 2 34 34 H 1.08003 * 119.54656 * 180.25144 * 5 4 3 35 35 H 1.09001 * 110.49596 * 272.79818 * 11 10 8 36 36 H 1.08997 * 110.50601 * 35.47665 * 11 10 8 37 37 H 1.08997 * 109.07301 * 47.80953 * 14 12 11 38 38 H 1.09006 * 109.00177 * 288.84197 * 14 12 11 39 39 H 1.08989 * 108.76054 * 199.97210 * 15 14 12 40 40 H 1.09010 * 108.75543 * 81.84279 * 15 14 12 41 41 H 0.96994 * 120.00022 * 179.97438 * 20 19 17 42 42 H 1.08992 * 108.15743 * 240.77002 * 25 16 15 43 43 H 1.08994 * 107.99524 * 124.07851 * 25 16 15 44 44 H 1.09004 * 110.07985 * 299.82302 * 28 10 8 45 45 H 1.09002 * 110.07707 * 61.32205 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1472 -0.0051 5 6 4.2322 -0.0837 0.0004 6 7 3.5407 -1.2022 0.0057 7 6 2.2133 -1.2003 0.0056 8 6 1.4768 -2.4859 0.0123 9 8 0.2662 -2.4921 0.1179 10 7 2.1495 -3.6485 -0.0987 11 6 1.5487 -4.9984 -0.1009 12 6 2.5734 -5.8671 -0.8981 13 1 2.4670 -6.9391 -0.7324 14 6 2.4292 -5.4760 -2.3688 15 6 3.5590 -6.0390 -3.2083 16 7 4.8381 -5.9918 -2.5415 17 6 5.9287 -6.3396 -3.2930 18 1 6.9071 -5.9650 -3.0306 19 6 5.7768 -7.1739 -4.3921 20 7 4.5738 -7.5506 -4.7710 21 14 7.2793 -7.7621 -5.3331 22 1 8.1661 -8.5282 -4.4210 23 1 6.8503 -8.6355 -6.4548 24 1 8.0163 -6.5904 -5.8713 25 6 5.0962 -5.6202 -1.1744 26 6 3.8926 -5.2966 -0.3405 27 1 4.0415 -5.6973 0.6622 28 6 3.6127 -3.7906 -0.2326 29 1 -0.3633 -0.1172 1.0210 30 1 -0.3634 0.9428 -0.4090 31 1 -0.3634 -0.8256 -0.6119 32 1 1.6900 2.1416 -0.0004 33 1 4.1721 2.0599 -0.0089 34 1 5.3114 -0.1247 0.0005 35 1 1.4412 -5.3699 0.9182 36 1 0.5836 -4.9859 -0.6074 37 1 2.4326 -4.3891 -2.4504 38 1 1.4807 -5.8581 -2.7464 39 1 3.6254 -5.4685 -4.1346 40 1 3.3300 -7.0761 -3.4539 41 1 4.4676 -8.1332 -5.5391 42 1 5.7516 -4.7493 -1.1770 43 1 5.6291 -6.4423 -0.6968 44 1 3.9575 -3.2804 -1.1320 45 1 4.1105 -3.3784 0.6452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087926375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:06 Heat of formation + Delta-G solvation = 31.978429 kcal Electronic energy + Delta-G solvation = -27094.793413 eV Core-core repulsion = 23498.864611 eV Total energy + Delta-G solvation = -3595.928802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01682 -40.88632 -39.39447 -37.35221 -34.79111 -34.02424 -33.30236 -32.77255 -31.82463 -29.42885 -28.38667 -27.08401 -25.97958 -24.83147 -23.37556 -23.34673 -22.74743 -20.97668 -19.38427 -18.93124 -18.56833 -17.60566 -17.23189 -16.92833 -16.61090 -16.46962 -15.99627 -15.62128 -15.49573 -15.14590 -14.83337 -14.57990 -14.43999 -14.12048 -13.97939 -13.81102 -13.70373 -13.57526 -13.28420 -13.21279 -13.01748 -12.88550 -12.70341 -12.45488 -12.19279 -12.00398 -11.73388 -11.44447 -11.30956 -11.21232 -10.99189 -10.76132 -10.45374 -10.30419 -10.09050 -9.57284 -8.68921 -7.61147 -5.29802 -0.34267 0.25517 1.47842 1.50204 1.56972 1.68255 1.87869 2.51707 2.83871 3.05475 3.29181 3.47294 3.60386 3.74062 3.80342 3.85552 3.88527 3.95863 4.05379 4.21396 4.39593 4.45332 4.50851 4.55498 4.58531 4.67825 4.76628 4.77238 4.80323 4.86732 4.96685 5.03513 5.07085 5.09997 5.13267 5.17362 5.26700 5.31800 5.34594 5.42319 5.56837 5.68947 5.75641 6.11214 6.40598 6.51198 6.72816 7.06742 7.28475 8.12375 8.28787 9.19121 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018928 B = 0.003667 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.898354 B = 7633.008802 C = 8358.557382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.075 3.925 6 N -0.472 5.472 7 C 0.042 3.958 8 C 0.573 3.427 9 O -0.561 6.561 10 N -0.600 5.600 11 C 0.113 3.887 12 C -0.078 4.078 13 H 0.108 0.892 14 C -0.116 4.116 15 C 0.191 3.809 16 N -0.612 5.612 17 C -0.276 4.276 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.179 3.821 26 C -0.102 4.102 27 H 0.102 0.898 28 C 0.148 3.852 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.061 0.939 39 H -0.021 1.021 40 H 0.062 0.938 41 H 0.244 0.756 42 H 0.013 0.987 43 H 0.020 0.980 44 H 0.050 0.950 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 16.823 13.086 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.111 4.111 4 C -0.149 4.149 5 C -0.085 4.085 6 N -0.183 5.183 7 C -0.095 4.095 8 C 0.362 3.638 9 O -0.441 6.441 10 N -0.331 5.331 11 C -0.009 4.009 12 C -0.097 4.097 13 H 0.126 0.874 14 C -0.154 4.154 15 C 0.066 3.934 16 N -0.338 5.338 17 C -0.406 4.406 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.054 3.946 26 C -0.121 4.121 27 H 0.120 0.880 28 C 0.025 3.975 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.197 0.803 34 H 0.202 0.798 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.080 0.920 39 H -0.003 1.003 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.563 15.971 13.069 21.135 hybrid contribution 0.433 0.221 -1.096 1.199 sum -4.130 16.192 11.973 20.557 Atomic orbital electron populations 1.20957 0.88867 1.03566 1.03327 1.21159 0.98799 0.92780 0.96275 1.21961 0.94671 0.98152 0.96349 1.22822 0.95254 1.00556 0.96247 1.23415 1.01788 0.87489 0.95783 1.67741 1.06880 1.33326 1.10369 1.20824 0.90630 0.93168 1.04836 1.17958 0.86031 0.82939 0.76879 1.90691 1.13763 1.86826 1.52808 1.48602 1.09238 1.05646 1.69597 1.22718 0.96714 0.80534 1.00904 1.22239 0.93876 0.99703 0.93917 0.87402 1.21588 0.99088 0.98986 0.95778 1.20186 0.83086 0.99988 0.90120 1.43000 1.04055 1.79544 1.07233 1.19618 0.89344 1.22637 1.08988 0.91272 1.25956 0.99200 0.98474 1.00536 1.70333 1.20970 1.39031 1.27768 0.85296 0.79159 0.78026 0.77667 1.19970 1.21972 1.20563 1.19346 0.94647 0.96832 0.83819 1.21565 0.94977 0.95055 1.00534 0.87998 1.21958 0.78864 0.94834 1.01811 0.90669 0.89476 0.91139 0.80760 0.80257 0.79828 0.89123 0.90839 0.94801 0.91983 1.00272 0.92039 0.94541 0.96920 0.96184 0.93109 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.73 71.24 0.62 -1.77 16 2 C -0.09 -2.01 5.93 -19.52 -0.12 -2.13 16 3 C -0.09 -1.31 9.83 22.45 0.22 -1.09 16 4 C -0.13 -1.73 10.12 22.44 0.23 -1.51 16 5 C 0.08 1.43 11.18 84.83 0.95 2.38 16 6 N -0.47 -12.73 6.94 -184.91 -1.28 -14.02 16 7 C 0.04 1.22 6.71 41.89 0.28 1.50 16 8 C 0.57 19.12 7.79 86.88 0.68 19.80 16 9 O -0.56 -20.20 13.57 -3.78 -0.05 -20.25 16 10 N -0.60 -19.31 2.80 -811.32 -2.27 -21.58 16 11 C 0.11 3.35 6.25 87.25 0.55 3.89 16 12 C -0.08 -2.61 3.78 -9.33 -0.04 -2.64 16 13 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 14 C -0.12 -4.73 4.98 30.09 0.15 -4.58 16 15 C 0.19 9.84 4.67 86.33 0.40 10.24 16 16 N -0.61 -31.42 3.25 -722.08 -2.35 -33.77 16 17 C -0.28 -15.44 9.42 84.04 0.79 -14.65 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 19 C -0.05 -2.69 5.40 84.86 0.46 -2.23 16 20 N -0.93 -55.31 9.52 21.65 0.21 -55.11 16 21 Si 0.97 45.30 29.56 68.60 2.03 47.32 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 C 0.18 7.39 5.67 85.87 0.49 7.88 16 26 C -0.10 -3.34 2.68 -11.19 -0.03 -3.37 16 27 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 28 C 0.15 4.69 4.06 86.36 0.35 5.04 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 31 H 0.07 1.96 5.86 -2.39 -0.01 1.95 16 32 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.26 7.93 -2.39 -0.02 2.25 16 37 H 0.03 1.43 6.77 -2.39 -0.02 1.42 16 38 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 39 H -0.02 -1.24 7.79 -2.39 -0.02 -1.26 16 40 H 0.06 3.55 5.84 -2.38 -0.01 3.54 16 41 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.01 0.53 7.78 -2.39 -0.02 0.52 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 1.89 7.32 -2.39 -0.02 1.87 16 45 H 0.09 2.54 7.40 -2.39 -0.02 2.52 16 Total: -1.00 -71.46 348.06 3.25 -68.21 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.99 Total: 12.43 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.98 Total: 16.75 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -5.70 Total: -124.47 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.46 3.25 -68.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087926375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.189 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds