Wall clock time and date at job start Tue Mar 31 2020 11:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38149 * 120.49992 * 2 1 4 4 N 1.31816 * 120.89790 * 180.31135 * 3 2 1 5 5 C 1.31806 * 122.04845 * 359.72180 * 4 3 2 6 6 C 1.38151 * 120.89657 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.50297 * 180.02562 * 6 5 4 8 8 C 1.39811 * 120.50130 * 179.75345 * 2 1 3 9 9 C 1.48152 * 120.92216 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99504 * 269.71636 * 9 8 2 11 11 N 1.34775 * 120.00269 * 89.71759 * 9 8 2 12 12 C 1.46504 * 119.99831 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.55823 * 36.58898 * 12 11 9 14 14 C 1.55156 * 110.56873 * 159.73707 * 12 11 9 15 15 C 1.55850 * 103.50154 * 118.38488 * 14 12 11 16 16 H 1.09001 * 116.12742 * 159.22770 * 15 14 12 17 17 C 1.55842 * 105.06314 * 288.25530 * 15 14 12 18 18 C 1.54859 * 103.44467 * 71.82526 * 17 15 14 19 19 C 1.55843 * 103.58689 * 359.91978 * 18 17 15 20 20 H 1.09000 * 115.55961 * 158.89625 * 19 18 17 21 21 N 1.50240 * 101.04905 * 33.02097 * 15 14 12 22 22 C 1.36936 * 130.83980 * 126.05596 * 21 15 14 23 23 H 1.08003 * 119.99807 * 179.97438 * 22 21 15 24 24 C 1.38816 * 119.99907 * 359.96822 * 22 21 15 25 25 N 1.31620 * 119.99965 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99906 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47071 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47097 * 119.99990 * 26 24 22 29 29 H 1.48497 * 109.46860 * 240.00094 * 26 24 22 30 30 H 1.09007 * 109.47137 * 270.24190 * 1 2 3 31 31 H 1.08999 * 109.47262 * 30.24384 * 1 2 3 32 32 H 1.08997 * 109.46921 * 150.24951 * 1 2 3 33 33 H 1.08010 * 119.55259 * 0.03273 * 3 2 1 34 34 H 1.07997 * 119.55347 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47253 * 269.98499 * 7 6 5 36 36 H 1.09003 * 109.46710 * 29.98022 * 7 6 5 37 37 H 1.09000 * 109.47619 * 149.97815 * 7 6 5 38 38 H 0.96997 * 119.99880 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.53111 * 359.91054 * 14 12 11 40 40 H 1.08996 * 110.67114 * 236.92431 * 14 12 11 41 41 H 1.08992 * 110.62766 * 313.33734 * 17 15 14 42 42 H 1.09005 * 110.62815 * 190.31141 * 17 15 14 43 43 H 1.08995 * 110.62426 * 118.48878 * 18 17 15 44 44 H 1.08994 * 110.62334 * 241.34868 * 18 17 15 45 45 H 0.96997 * 119.99637 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5262 1.1995 -0.0061 5 6 4.2334 0.0872 -0.0071 6 6 3.6136 -1.1475 -0.0011 7 6 4.4309 -2.4136 -0.0017 8 6 2.2166 -1.2046 0.0052 9 6 1.5079 -2.5057 0.0114 10 8 1.2223 -3.0369 1.0663 11 7 1.1801 -3.1000 -1.1530 12 6 0.4788 -4.3863 -1.1468 13 1 -0.2348 -4.4292 -0.3239 14 6 -0.2301 -4.6273 -2.5057 15 6 0.4549 -5.9172 -3.0497 16 1 -0.1000 -6.4731 -3.8055 17 6 1.8899 -5.4706 -3.4620 18 6 2.5968 -5.2325 -2.1049 19 6 1.4944 -5.5648 -1.0547 20 1 1.8552 -5.8106 -0.0559 21 7 0.7385 -6.6536 -1.7713 22 6 0.4112 -7.9237 -1.3779 23 1 0.7092 -8.2808 -0.4032 24 6 -0.3037 -8.7522 -2.2320 25 7 -0.6665 -8.3171 -3.4201 26 14 -0.7509 -10.4846 -1.6952 27 1 -0.2298 -10.7286 -0.3261 28 1 -2.2279 -10.6379 -1.6977 29 1 -0.1499 -11.4647 -2.6350 30 1 -0.3634 0.0043 1.0277 31 1 -0.3634 0.8878 -0.5176 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6689 2.1262 0.0005 34 1 5.3120 0.1417 -0.0126 35 1 4.6229 -2.7216 -1.0294 36 1 5.3782 -2.2348 0.5071 37 1 3.8828 -3.2002 0.5170 38 1 1.4084 -2.6761 -1.9950 39 1 -0.0591 -3.7882 -3.1801 40 1 -1.2975 -4.7921 -2.3591 41 1 1.8533 -4.5490 -4.0427 42 1 2.3913 -6.2594 -4.0229 43 1 3.4486 -5.9032 -1.9928 44 1 2.9132 -4.1935 -2.0139 45 1 -1.1657 -8.8962 -4.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095758137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:23 Heat of formation + Delta-G solvation = 40.957906 kcal Electronic energy + Delta-G solvation = -27123.946431 eV Core-core repulsion = 23528.407008 eV Total energy + Delta-G solvation = -3595.539422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96679 -39.70333 -38.19884 -34.09474 -33.93269 -33.63045 -32.33170 -29.38788 -29.07720 -28.32243 -27.46927 -27.30889 -24.62488 -23.87005 -21.50023 -21.44904 -20.76506 -19.59547 -18.68893 -17.96519 -17.20350 -16.90915 -16.03587 -15.17989 -14.98389 -14.74304 -14.65076 -14.61069 -14.07172 -13.79438 -13.59319 -13.45825 -13.40927 -12.74621 -12.64308 -12.48948 -12.39230 -12.26352 -11.82776 -11.63409 -11.56600 -11.09769 -10.97252 -10.93642 -10.88563 -10.29959 -10.27089 -10.10040 -9.89041 -9.73689 -9.50084 -9.43162 -9.28650 -9.00858 -8.97821 -8.62124 -6.96096 -5.76724 -3.14731 0.82823 0.84652 2.61203 3.23104 3.37232 3.43325 3.45215 3.50192 4.17959 4.40369 4.49213 4.51176 4.63206 4.75721 4.97394 5.14015 5.18947 5.33730 5.37305 5.38380 5.43038 5.45881 5.50038 5.72120 5.72840 5.78219 5.87845 5.90906 5.93319 5.99987 6.01467 6.05887 6.22590 6.27679 6.41871 6.47318 6.54049 6.58298 6.73857 6.89308 6.93067 7.20669 7.47818 7.61978 7.71158 7.75667 8.12061 8.29567 9.06552 9.68952 10.48563 11.32972 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.003437 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.541340 B = 8145.265052 C = 8349.085735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.100 4.100 3 C 0.089 3.911 4 N -0.472 5.472 5 C 0.090 3.910 6 C -0.096 4.096 7 C -0.120 4.120 8 C -0.081 4.081 9 C 0.561 3.439 10 O -0.528 6.528 11 N -0.701 5.701 12 C 0.127 3.873 13 H 0.084 0.916 14 C -0.139 4.139 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.137 4.137 18 C -0.131 4.131 19 C 0.128 3.872 20 H 0.086 0.914 21 N -0.590 5.590 22 C -0.210 4.210 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.923 5.923 26 Si 0.916 3.084 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 17.212 1.866 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.102 4.102 3 C -0.068 4.068 4 N -0.179 5.179 5 C -0.067 4.067 6 C -0.099 4.099 7 C -0.177 4.177 8 C -0.092 4.092 9 C 0.345 3.655 10 O -0.404 6.404 11 N -0.351 5.351 12 C 0.021 3.979 13 H 0.102 0.898 14 C -0.179 4.179 15 C 0.048 3.952 16 H 0.172 0.828 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.104 0.896 21 N -0.310 5.310 22 C -0.338 4.338 23 H 0.098 0.902 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.747 3.253 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.300 17.271 2.591 18.566 hybrid contribution -0.471 -1.363 -0.082 1.444 sum 5.829 15.908 2.509 17.127 Atomic orbital electron populations 1.20818 0.89673 1.03572 1.03372 1.20980 0.97708 0.92679 0.98875 1.22583 0.89802 0.97141 0.97266 1.67521 1.08246 1.31515 1.10629 1.22601 1.00307 0.86670 0.97150 1.21006 0.92740 0.97687 0.98460 1.20865 0.99546 0.93947 1.03372 1.20293 0.93736 0.94067 1.01095 1.18092 0.78899 0.83777 0.84737 1.90826 1.53852 1.64818 1.30944 1.46300 1.58468 1.22843 1.07491 1.22768 0.94910 0.80890 0.99311 0.89812 1.23340 1.00211 0.99918 0.94469 1.23769 0.92197 0.88239 0.91030 0.82782 1.23059 1.00074 0.98856 0.95697 1.22927 0.98255 0.98775 0.97081 1.23261 0.91633 0.87996 0.95192 0.89619 1.46593 1.61819 1.09512 1.13116 1.19115 1.28300 0.86580 0.99786 0.90241 1.24696 1.00955 0.98685 0.96380 1.69438 1.43876 1.35524 1.08320 0.85957 0.77839 0.83835 0.77644 1.20526 1.21753 1.21797 0.90203 0.90534 0.90956 0.82393 0.82343 0.90058 0.90558 0.90560 0.76874 0.92706 0.91455 0.93685 0.92601 0.93006 0.93151 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.67 36.00 0.35 -0.76 16 2 C -0.10 -1.11 5.93 -104.07 -0.62 -1.73 16 3 C 0.09 0.92 10.86 -17.59 -0.19 0.72 16 4 N -0.47 -5.39 10.33 -13.30 -0.14 -5.53 16 5 C 0.09 0.94 10.86 -17.59 -0.19 0.75 16 6 C -0.10 -1.10 5.93 -104.06 -0.62 -1.72 16 7 C -0.12 -1.23 9.67 36.00 0.35 -0.88 16 8 C -0.08 -1.03 5.67 -104.65 -0.59 -1.62 16 9 C 0.56 8.47 4.51 -12.19 -0.05 8.42 16 10 O -0.53 -10.13 16.83 5.35 0.09 -10.04 16 11 N -0.70 -9.98 3.64 -52.08 -0.19 -10.17 16 12 C 0.13 2.26 3.10 -65.27 -0.20 2.06 16 13 H 0.08 1.69 7.69 -51.93 -0.40 1.29 16 14 C -0.14 -2.53 6.21 -24.07 -0.15 -2.68 16 15 C 0.15 3.36 4.72 -62.80 -0.30 3.06 16 16 H 0.16 3.87 5.52 -51.93 -0.29 3.58 16 17 C -0.14 -2.55 6.44 -24.23 -0.16 -2.71 16 18 C -0.13 -2.29 6.31 -24.23 -0.15 -2.45 16 19 C 0.13 2.58 5.37 -62.55 -0.34 2.25 16 20 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 21 N -0.59 -14.29 2.99 -145.47 -0.44 -14.73 16 22 C -0.21 -5.68 10.59 -15.06 -0.16 -5.84 16 23 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.92 -25.70 10.47 55.49 0.58 -25.12 16 26 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.07 0.77 7.17 -51.93 -0.37 0.40 16 33 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 34 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 38 H 0.40 4.82 8.00 -40.82 -0.33 4.50 16 39 H 0.05 0.83 7.34 -51.93 -0.38 0.45 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.74 6.48 -51.93 -0.34 0.41 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -31.00 360.96 -9.44 -40.44 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.65 Total: 6.54 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.12 Total: -3.55 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.18 Total: -55.55 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.00 -9.44 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095758137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.399 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds