Wall clock time and date at job start Tue Mar 31 2020 11:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38149 * 120.49992 * 2 1 4 4 N 1.31816 * 120.89790 * 180.31135 * 3 2 1 5 5 C 1.31806 * 122.04845 * 359.72180 * 4 3 2 6 6 C 1.38151 * 120.89657 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.50297 * 180.02562 * 6 5 4 8 8 C 1.39811 * 120.50130 * 179.75345 * 2 1 3 9 9 C 1.48152 * 120.92216 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99504 * 269.71636 * 9 8 2 11 11 N 1.34775 * 120.00269 * 89.71759 * 9 8 2 12 12 C 1.46504 * 119.99831 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.55823 * 36.58898 * 12 11 9 14 14 C 1.55156 * 110.56873 * 159.73707 * 12 11 9 15 15 C 1.55850 * 103.50154 * 118.38488 * 14 12 11 16 16 H 1.09001 * 116.12742 * 159.22770 * 15 14 12 17 17 C 1.55842 * 105.06314 * 288.25530 * 15 14 12 18 18 C 1.54859 * 103.44467 * 71.82526 * 17 15 14 19 19 C 1.55843 * 103.58689 * 359.91978 * 18 17 15 20 20 H 1.09000 * 115.55961 * 158.89625 * 19 18 17 21 21 N 1.50240 * 101.04905 * 33.02097 * 15 14 12 22 22 C 1.36936 * 130.83980 * 126.05596 * 21 15 14 23 23 H 1.08003 * 119.99807 * 179.97438 * 22 21 15 24 24 C 1.38816 * 119.99907 * 359.96822 * 22 21 15 25 25 N 1.31620 * 119.99965 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99906 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47071 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47097 * 119.99990 * 26 24 22 29 29 H 1.48497 * 109.46860 * 240.00094 * 26 24 22 30 30 H 1.09007 * 109.47137 * 270.24190 * 1 2 3 31 31 H 1.08999 * 109.47262 * 30.24384 * 1 2 3 32 32 H 1.08997 * 109.46921 * 150.24951 * 1 2 3 33 33 H 1.08010 * 119.55259 * 0.03273 * 3 2 1 34 34 H 1.07997 * 119.55347 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47253 * 269.98499 * 7 6 5 36 36 H 1.09003 * 109.46710 * 29.98022 * 7 6 5 37 37 H 1.09000 * 109.47619 * 149.97815 * 7 6 5 38 38 H 0.96997 * 119.99880 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.53111 * 359.91054 * 14 12 11 40 40 H 1.08996 * 110.67114 * 236.92431 * 14 12 11 41 41 H 1.08992 * 110.62766 * 313.33734 * 17 15 14 42 42 H 1.09005 * 110.62815 * 190.31141 * 17 15 14 43 43 H 1.08995 * 110.62426 * 118.48878 * 18 17 15 44 44 H 1.08994 * 110.62334 * 241.34868 * 18 17 15 45 45 H 0.96997 * 119.99637 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5262 1.1995 -0.0061 5 6 4.2334 0.0872 -0.0071 6 6 3.6136 -1.1475 -0.0011 7 6 4.4309 -2.4136 -0.0017 8 6 2.2166 -1.2046 0.0052 9 6 1.5079 -2.5057 0.0114 10 8 1.2223 -3.0369 1.0663 11 7 1.1801 -3.1000 -1.1530 12 6 0.4788 -4.3863 -1.1468 13 1 -0.2348 -4.4292 -0.3239 14 6 -0.2301 -4.6273 -2.5057 15 6 0.4549 -5.9172 -3.0497 16 1 -0.1000 -6.4731 -3.8055 17 6 1.8899 -5.4706 -3.4620 18 6 2.5968 -5.2325 -2.1049 19 6 1.4944 -5.5648 -1.0547 20 1 1.8552 -5.8106 -0.0559 21 7 0.7385 -6.6536 -1.7713 22 6 0.4112 -7.9237 -1.3779 23 1 0.7092 -8.2808 -0.4032 24 6 -0.3037 -8.7522 -2.2320 25 7 -0.6665 -8.3171 -3.4201 26 14 -0.7509 -10.4846 -1.6952 27 1 -0.2298 -10.7286 -0.3261 28 1 -2.2279 -10.6379 -1.6977 29 1 -0.1499 -11.4647 -2.6350 30 1 -0.3634 0.0043 1.0277 31 1 -0.3634 0.8878 -0.5176 32 1 -0.3633 -0.8922 -0.5099 33 1 1.6689 2.1262 0.0005 34 1 5.3120 0.1417 -0.0126 35 1 4.6229 -2.7216 -1.0294 36 1 5.3782 -2.2348 0.5071 37 1 3.8828 -3.2002 0.5170 38 1 1.4084 -2.6761 -1.9950 39 1 -0.0591 -3.7882 -3.1801 40 1 -1.2975 -4.7921 -2.3591 41 1 1.8533 -4.5490 -4.0427 42 1 2.3913 -6.2594 -4.0229 43 1 3.4486 -5.9032 -1.9928 44 1 2.9132 -4.1935 -2.0139 45 1 -1.1657 -8.8962 -4.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095758137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:22 Heat of formation + Delta-G solvation = 22.429703 kcal Electronic energy + Delta-G solvation = -27124.749874 eV Core-core repulsion = 23528.407008 eV Total energy + Delta-G solvation = -3596.342866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01805 -41.00862 -39.55421 -35.54643 -34.72909 -34.67701 -34.09653 -31.01410 -30.76189 -29.58265 -28.52586 -28.21050 -26.25941 -25.13282 -22.89878 -22.26736 -22.06154 -21.25427 -20.21225 -19.24675 -18.65465 -18.03753 -17.30671 -16.84339 -16.44063 -16.14701 -15.82774 -15.47458 -15.45300 -15.09548 -14.86703 -14.22027 -14.18577 -14.09756 -13.94997 -13.54799 -13.45000 -13.41797 -13.24561 -13.21013 -12.89451 -12.81249 -12.63340 -12.42553 -12.40197 -11.99335 -11.90366 -11.62495 -11.45945 -11.15040 -11.03891 -10.81765 -10.62494 -10.39935 -10.09546 -9.78032 -8.87784 -7.80729 -5.19855 -0.05954 0.06104 1.40488 1.46255 1.46599 1.56018 2.02547 2.48804 2.68065 3.32695 3.40054 3.47086 3.60631 3.71664 3.73828 3.91524 3.96031 4.07894 4.12724 4.21311 4.38595 4.40525 4.43524 4.57114 4.58352 4.65049 4.68570 4.69428 4.76404 4.77625 4.93179 4.99204 5.04527 5.10363 5.12691 5.17312 5.18417 5.19012 5.30866 5.43797 5.51585 5.64468 5.70360 5.87268 6.25907 6.44814 6.92183 7.04033 7.10933 7.67770 8.53381 9.26241 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.003437 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.541340 B = 8145.265052 C = 8349.085735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C 0.092 3.908 4 N -0.485 5.485 5 C 0.092 3.908 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.101 4.101 9 C 0.570 3.430 10 O -0.574 6.574 11 N -0.686 5.686 12 C 0.146 3.854 13 H 0.056 0.944 14 C -0.124 4.124 15 C 0.138 3.862 16 H 0.122 0.878 17 C -0.126 4.126 18 C -0.115 4.115 19 C 0.120 3.880 20 H 0.067 0.933 21 N -0.618 5.618 22 C -0.224 4.224 23 H 0.071 0.929 24 C -0.061 4.061 25 N -0.943 5.943 26 Si 0.974 3.026 27 H -0.275 1.275 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.413 0.587 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 19.989 1.293 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.105 4.105 3 C -0.065 4.065 4 N -0.193 5.193 5 C -0.065 4.065 6 C -0.103 4.103 7 C -0.176 4.176 8 C -0.112 4.112 9 C 0.356 3.644 10 O -0.453 6.453 11 N -0.337 5.337 12 C 0.040 3.960 13 H 0.074 0.926 14 C -0.164 4.164 15 C 0.033 3.967 16 H 0.139 0.861 17 C -0.165 4.165 18 C -0.154 4.154 19 C 0.012 3.988 20 H 0.085 0.915 21 N -0.340 5.340 22 C -0.353 4.353 23 H 0.089 0.911 24 C -0.254 4.254 25 N -0.593 5.593 26 Si 0.803 3.197 27 H -0.199 1.199 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.205 0.795 34 H 0.204 0.796 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.250 0.750 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.640 20.098 1.999 21.594 hybrid contribution -0.853 -2.156 0.150 2.323 sum 6.787 17.942 2.149 19.303 Atomic orbital electron populations 1.20855 0.88805 1.04307 1.03373 1.21165 0.98417 0.92384 0.98559 1.23035 0.89629 0.97858 0.95997 1.67606 1.08832 1.31914 1.10904 1.23016 1.01588 0.85887 0.96019 1.21148 0.92162 0.98574 0.98436 1.20880 1.00049 0.92621 1.04005 1.20184 0.94480 0.93009 1.03530 1.18434 0.77843 0.84248 0.83851 1.90807 1.55637 1.66252 1.32628 1.46013 1.57870 1.21434 1.08335 1.22213 0.93790 0.81798 0.98239 0.92581 1.23164 0.98735 0.99580 0.94911 1.23690 0.94223 0.89062 0.89774 0.86110 1.22952 0.97431 0.99949 0.96217 1.22812 0.96772 1.00591 0.95268 1.23379 0.92817 0.87756 0.94879 0.91489 1.46843 1.62752 1.09574 1.14841 1.19325 1.28078 0.88314 0.99535 0.91142 1.25380 1.01535 1.01811 0.96708 1.69662 1.44491 1.36194 1.08905 0.85064 0.77154 0.80078 0.77368 1.19942 1.21916 1.21827 0.90585 0.87518 0.92458 0.79511 0.79620 0.88870 0.88243 0.93451 0.74959 0.88631 0.93213 0.89657 0.94542 0.93712 0.89698 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.67 71.23 0.69 -1.27 16 2 C -0.10 -2.03 5.93 -19.51 -0.12 -2.15 16 3 C 0.09 1.58 10.86 84.67 0.92 2.50 16 4 N -0.49 -9.48 10.33 -196.00 -2.03 -11.51 16 5 C 0.09 1.61 10.86 84.68 0.92 2.53 16 6 C -0.10 -2.04 5.93 -19.50 -0.12 -2.16 16 7 C -0.12 -2.16 9.67 71.24 0.69 -1.47 16 8 C -0.10 -2.39 5.67 -19.88 -0.11 -2.51 16 9 C 0.57 16.79 4.51 86.88 0.39 17.18 16 10 O -0.57 -22.42 16.83 -3.78 -0.06 -22.48 16 11 N -0.69 -18.45 3.64 -436.96 -1.59 -20.04 16 12 C 0.15 5.20 3.10 46.72 0.14 5.35 16 13 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 14 C -0.12 -4.41 6.21 32.32 0.20 -4.20 16 15 C 0.14 6.05 4.72 46.23 0.22 6.27 16 16 H 0.12 6.22 5.52 -2.39 -0.01 6.21 16 17 C -0.13 -4.48 6.44 32.21 0.21 -4.27 16 18 C -0.12 -3.87 6.31 32.21 0.20 -3.67 16 19 C 0.12 4.88 5.37 46.14 0.25 5.13 16 20 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 21 N -0.62 -30.78 2.99 -614.16 -1.84 -32.62 16 22 C -0.22 -12.53 10.59 84.03 0.89 -11.64 16 23 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 25 N -0.94 -54.10 10.47 21.65 0.23 -53.87 16 26 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 27 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 29 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.06 1.14 7.17 -2.39 -0.02 1.12 16 33 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.05 1.15 7.17 -2.39 -0.02 1.14 16 38 H 0.41 8.65 8.00 -92.71 -0.74 7.91 16 39 H 0.10 2.58 7.34 -2.39 -0.02 2.56 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.34 7.81 -2.39 -0.02 2.32 16 42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.25 6.48 -2.39 -0.02 2.23 16 45 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -70.71 360.96 2.85 -67.87 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.27 Total: 22.13 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.84 Total: 2.65 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -5.23 Total: -118.04 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.06 Total: -22.48 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.71 2.85 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095758137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.296 kcal (2) G-P(sol) polarization free energy of solvation -70.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds