Wall clock time and date at job start Tue Mar 31 2020 11:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38228 * 120.41958 * 2 1 4 4 N 1.31851 * 120.76951 * 180.02562 * 3 2 1 5 5 C 1.31892 * 121.72214 * 359.97368 * 4 3 2 6 6 C 1.38184 * 120.76179 * 359.74759 * 5 4 3 7 7 C 1.38624 * 120.42072 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.79130 * 359.95661 * 7 2 1 9 9 C 1.50697 * 109.47371 * 84.99526 * 8 7 2 10 10 O 1.21286 * 119.99949 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00350 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00058 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.56023 * 34.30133 * 12 11 9 14 14 C 1.54857 * 110.62664 * 271.40080 * 12 11 9 15 15 C 1.55845 * 103.44400 * 241.35076 * 14 12 11 16 16 H 1.08997 * 115.56002 * 158.80920 * 15 14 12 17 17 C 1.55843 * 105.06833 * 287.42629 * 15 14 12 18 18 C 1.56685 * 102.59930 * 72.29850 * 17 15 14 19 19 C 1.55838 * 110.76084 * 157.29611 * 12 11 9 20 20 H 1.09009 * 115.56456 * 319.74503 * 19 12 11 21 21 N 1.50240 * 101.05175 * 32.93927 * 15 14 12 22 22 C 1.36935 * 130.83889 * 126.04557 * 21 15 14 23 23 H 1.08007 * 119.99744 * 179.97438 * 22 21 15 24 24 C 1.38811 * 120.00111 * 359.97438 * 22 21 15 25 25 N 1.31621 * 119.99986 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47042 * 89.99575 * 26 24 22 28 28 H 1.48495 * 109.46733 * 209.99628 * 26 24 22 29 29 H 1.48497 * 109.46906 * 329.99471 * 26 24 22 30 30 H 1.09010 * 109.46983 * 269.97870 * 1 2 3 31 31 H 1.08997 * 109.47397 * 29.97784 * 1 2 3 32 32 H 1.08998 * 109.47373 * 149.98101 * 1 2 3 33 33 H 1.08008 * 119.62238 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.61754 * 180.02562 * 5 4 3 35 35 H 1.08006 * 120.41464 * 180.26397 * 6 5 4 36 36 H 1.09001 * 109.46602 * 325.00080 * 8 7 2 37 37 H 1.08993 * 109.47351 * 205.00050 * 8 7 2 38 38 H 0.97000 * 119.99908 * 0.02562 * 11 9 8 39 39 H 1.08994 * 110.62421 * 359.83866 * 14 12 11 40 40 H 1.08995 * 110.62373 * 122.70480 * 14 12 11 41 41 H 1.08996 * 110.63180 * 190.31832 * 17 15 14 42 42 H 1.09003 * 110.62221 * 313.33576 * 17 15 14 43 43 H 1.08999 * 110.35634 * 241.21967 * 18 17 15 44 44 H 1.09000 * 110.88418 * 118.36700 * 18 17 15 45 45 H 0.96991 * 119.99818 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0005 6 6 3.5948 -1.1470 0.0052 7 6 2.2089 -1.1954 -0.0005 8 6 1.4832 -2.5161 -0.0001 9 6 1.1317 -2.8966 -1.4153 10 8 1.4405 -2.1673 -2.3339 11 7 0.4741 -4.0473 -1.6602 12 6 0.1329 -4.4174 -3.0361 13 1 0.9074 -4.0822 -3.7259 14 6 -1.2435 -3.8298 -3.4337 15 6 -2.1020 -5.0936 -3.7410 16 1 -3.1816 -4.9519 -3.6927 17 6 -1.5548 -5.6356 -5.0958 18 6 -0.1654 -6.2343 -4.6883 19 6 -0.0814 -5.9563 -3.1571 20 1 0.6185 -6.5744 -2.5947 21 7 -1.5260 -6.0778 -2.7628 22 6 -2.1314 -6.8485 -1.8064 23 1 -1.5387 -7.5076 -1.1892 24 6 -3.5067 -6.7827 -1.6301 25 7 -4.2288 -5.9791 -2.3819 26 14 -4.3326 -7.8346 -0.3259 27 1 -4.3822 -7.0859 0.9556 28 1 -5.7136 -8.1664 -0.7592 29 1 -3.5584 -9.0877 -0.1374 30 1 -0.3633 -0.0004 1.0278 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6675 2.1278 0.0004 34 1 5.3047 0.1287 -0.0005 35 1 4.1738 -2.0587 0.0095 36 1 0.5708 -2.4291 0.5899 37 1 2.1247 -3.2831 0.4337 38 1 0.2268 -4.6304 -0.9256 39 1 -1.6735 -3.2654 -2.6064 40 1 -1.1511 -3.2009 -4.3191 41 1 -2.2077 -6.4143 -5.4898 42 1 -1.4435 -4.8254 -5.8165 43 1 0.6383 -5.7212 -5.2164 44 1 -0.1307 -7.3056 -4.8864 45 1 -5.1897 -5.9329 -2.2585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097075479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:39 Heat of formation + Delta-G solvation = 35.563680 kcal Electronic energy + Delta-G solvation = -26605.377623 eV Core-core repulsion = 23009.604290 eV Total energy + Delta-G solvation = -3595.773334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59150 -39.61786 -38.30701 -34.38532 -33.78800 -32.58446 -32.43738 -29.48480 -29.15089 -28.59761 -27.57169 -26.88696 -24.25378 -23.04194 -22.12231 -21.17582 -19.92260 -19.72318 -18.72472 -17.07633 -16.85224 -16.76693 -16.64555 -15.61732 -15.14506 -14.88277 -14.66568 -14.37297 -13.96959 -13.83174 -13.47866 -13.42375 -12.93674 -12.78530 -12.72536 -12.49765 -12.14611 -12.01676 -11.85649 -11.43580 -11.21830 -11.16241 -10.98541 -10.94747 -10.54973 -10.43977 -10.14846 -9.95980 -9.86193 -9.55659 -9.50188 -9.27611 -9.15110 -9.01711 -8.91065 -8.50098 -7.00490 -5.79840 -3.19401 1.09973 1.19100 2.89613 3.31329 3.36947 3.39232 3.49505 3.85918 4.35340 4.39013 4.48168 4.64219 4.88709 4.94017 5.07485 5.11409 5.25485 5.31217 5.33402 5.38706 5.53942 5.58324 5.60946 5.64471 5.75850 5.83626 5.92491 6.00724 6.05270 6.07873 6.11194 6.25602 6.30603 6.37773 6.45153 6.55612 6.67591 6.70546 6.78166 6.90636 7.07877 7.27883 7.41466 7.73754 7.93128 7.93579 8.11961 8.56246 9.01599 9.64949 10.46063 11.28924 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.003505 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.777544 B = 7987.729472 C = 8705.847043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.096 3.904 4 N -0.487 5.487 5 C 0.088 3.912 6 C -0.158 4.158 7 C -0.017 4.017 8 C -0.110 4.110 9 C 0.512 3.488 10 O -0.544 6.544 11 N -0.705 5.705 12 C 0.129 3.871 13 H 0.077 0.923 14 C -0.142 4.142 15 C 0.153 3.847 16 H 0.152 0.848 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.125 3.875 20 H 0.088 0.912 21 N -0.590 5.590 22 C -0.216 4.216 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.919 5.919 26 Si 0.914 3.086 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.403 0.597 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 7.320 4.270 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.061 4.061 4 N -0.195 5.195 5 C -0.068 4.068 6 C -0.178 4.178 7 C -0.025 4.025 8 C -0.150 4.150 9 C 0.297 3.703 10 O -0.421 6.421 11 N -0.355 5.355 12 C 0.023 3.977 13 H 0.095 0.905 14 C -0.182 4.182 15 C 0.046 3.954 16 H 0.169 0.831 17 C -0.179 4.179 18 C -0.167 4.167 19 C 0.017 3.983 20 H 0.106 0.894 21 N -0.311 5.311 22 C -0.343 4.343 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.566 5.566 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.430 8.498 3.779 14.736 hybrid contribution -0.944 -1.712 0.950 2.173 sum 10.486 6.786 4.729 13.355 Atomic orbital electron populations 1.20767 0.90214 1.03786 1.02340 1.20761 0.97591 0.93556 1.00116 1.22591 0.89900 0.97259 0.96374 1.67619 1.08351 1.31461 1.12083 1.22624 1.00127 0.87654 0.96437 1.21979 0.94366 0.99727 1.01712 1.19588 0.93461 0.93897 0.95546 1.20744 1.02435 0.95315 0.96495 1.20222 0.78206 0.81590 0.90251 1.90703 1.54350 1.51048 1.46041 1.46013 1.56967 1.22009 1.10467 1.22631 0.96549 0.97107 0.81415 0.90457 1.23444 0.95595 0.99308 0.99855 1.23714 1.00484 0.85717 0.85451 0.83124 1.23368 0.95974 0.99255 0.99268 1.23170 0.97224 0.99898 0.96456 1.23157 0.88976 0.92119 0.94065 0.89442 1.46518 0.99616 1.46505 1.38452 1.18993 0.90241 1.16189 1.08920 0.90409 1.24702 0.95981 1.00001 0.99822 1.69465 1.05506 1.40500 1.41166 0.86076 0.78913 0.79636 0.80852 1.21700 1.21684 1.20800 0.90813 0.90996 0.91033 0.82980 0.82981 0.85007 0.87475 0.87808 0.76277 0.92340 0.92923 0.92602 0.93130 0.93088 0.92412 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.30 36.00 0.33 -0.93 16 2 C -0.12 -1.48 5.90 -104.49 -0.62 -2.10 16 3 C 0.10 1.19 10.86 -17.55 -0.19 0.99 16 4 N -0.49 -6.47 10.36 -13.25 -0.14 -6.61 16 5 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 6 C -0.16 -1.83 9.80 -39.44 -0.39 -2.21 16 7 C -0.02 -0.21 4.41 -104.32 -0.46 -0.67 16 8 C -0.11 -1.27 5.19 -29.04 -0.15 -1.42 16 9 C 0.51 7.92 7.15 -10.99 -0.08 7.85 16 10 O -0.54 -10.38 15.72 5.55 0.09 -10.30 16 11 N -0.71 -11.25 5.09 -51.40 -0.26 -11.51 16 12 C 0.13 2.32 2.76 -65.44 -0.18 2.14 16 13 H 0.08 1.42 7.29 -51.93 -0.38 1.04 16 14 C -0.14 -2.81 6.22 -24.23 -0.15 -2.96 16 15 C 0.15 3.39 4.67 -62.80 -0.29 3.09 16 16 H 0.15 3.85 5.52 -51.93 -0.29 3.57 16 17 C -0.14 -2.70 6.58 -23.22 -0.15 -2.85 16 18 C -0.13 -2.26 6.49 -23.22 -0.15 -2.41 16 19 C 0.13 2.34 5.06 -62.80 -0.32 2.03 16 20 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 21 N -0.59 -13.46 2.99 -145.81 -0.44 -13.90 16 22 C -0.22 -5.43 10.59 -15.06 -0.16 -5.59 16 23 H 0.08 1.89 7.83 -52.48 -0.41 1.47 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -25.09 10.47 55.49 0.58 -24.51 16 26 Si 0.91 20.78 29.55 -169.99 -5.02 15.75 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.07 0.92 6.35 -51.93 -0.33 0.59 16 33 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.11 1.11 7.11 -51.93 -0.37 0.74 16 37 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.40 6.09 8.64 -40.82 -0.35 5.74 16 39 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 40 H 0.05 0.99 7.81 -51.93 -0.41 0.59 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.88 7.81 -51.93 -0.41 0.48 16 43 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -30.74 362.51 -9.67 -40.40 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.69 Total: 9.75 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.24 Total: -4.55 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.25 Total: -56.52 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.74 -9.67 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097075479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.966 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds