Wall clock time and date at job start Tue Mar 31 2020 11:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38228 * 120.41958 * 2 1 4 4 N 1.31851 * 120.76951 * 180.02562 * 3 2 1 5 5 C 1.31892 * 121.72214 * 359.97368 * 4 3 2 6 6 C 1.38184 * 120.76179 * 359.74759 * 5 4 3 7 7 C 1.38624 * 120.42072 * 180.02562 * 2 1 3 8 8 C 1.50695 * 120.79130 * 359.95661 * 7 2 1 9 9 C 1.50697 * 109.47371 * 84.99526 * 8 7 2 10 10 O 1.21286 * 119.99949 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00350 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00058 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.56023 * 34.30133 * 12 11 9 14 14 C 1.54857 * 110.62664 * 271.40080 * 12 11 9 15 15 C 1.55845 * 103.44400 * 241.35076 * 14 12 11 16 16 H 1.08997 * 115.56002 * 158.80920 * 15 14 12 17 17 C 1.55843 * 105.06833 * 287.42629 * 15 14 12 18 18 C 1.56685 * 102.59930 * 72.29850 * 17 15 14 19 19 C 1.55838 * 110.76084 * 157.29611 * 12 11 9 20 20 H 1.09009 * 115.56456 * 319.74503 * 19 12 11 21 21 N 1.50240 * 101.05175 * 32.93927 * 15 14 12 22 22 C 1.36935 * 130.83889 * 126.04557 * 21 15 14 23 23 H 1.08007 * 119.99744 * 179.97438 * 22 21 15 24 24 C 1.38811 * 120.00111 * 359.97438 * 22 21 15 25 25 N 1.31621 * 119.99986 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47042 * 89.99575 * 26 24 22 28 28 H 1.48495 * 109.46733 * 209.99628 * 26 24 22 29 29 H 1.48497 * 109.46906 * 329.99471 * 26 24 22 30 30 H 1.09010 * 109.46983 * 269.97870 * 1 2 3 31 31 H 1.08997 * 109.47397 * 29.97784 * 1 2 3 32 32 H 1.08998 * 109.47373 * 149.98101 * 1 2 3 33 33 H 1.08008 * 119.62238 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.61754 * 180.02562 * 5 4 3 35 35 H 1.08006 * 120.41464 * 180.26397 * 6 5 4 36 36 H 1.09001 * 109.46602 * 325.00080 * 8 7 2 37 37 H 1.08993 * 109.47351 * 205.00050 * 8 7 2 38 38 H 0.97000 * 119.99908 * 0.02562 * 11 9 8 39 39 H 1.08994 * 110.62421 * 359.83866 * 14 12 11 40 40 H 1.08995 * 110.62373 * 122.70480 * 14 12 11 41 41 H 1.08996 * 110.63180 * 190.31832 * 17 15 14 42 42 H 1.09003 * 110.62221 * 313.33576 * 17 15 14 43 43 H 1.08999 * 110.35634 * 241.21967 * 18 17 15 44 44 H 1.09000 * 110.88418 * 118.36700 * 18 17 15 45 45 H 0.96991 * 119.99818 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0005 6 6 3.5948 -1.1470 0.0052 7 6 2.2089 -1.1954 -0.0005 8 6 1.4832 -2.5161 -0.0001 9 6 1.1317 -2.8966 -1.4153 10 8 1.4405 -2.1673 -2.3339 11 7 0.4741 -4.0473 -1.6602 12 6 0.1329 -4.4174 -3.0361 13 1 0.9074 -4.0822 -3.7259 14 6 -1.2435 -3.8298 -3.4337 15 6 -2.1020 -5.0936 -3.7410 16 1 -3.1816 -4.9519 -3.6927 17 6 -1.5548 -5.6356 -5.0958 18 6 -0.1654 -6.2343 -4.6883 19 6 -0.0814 -5.9563 -3.1571 20 1 0.6185 -6.5744 -2.5947 21 7 -1.5260 -6.0778 -2.7628 22 6 -2.1314 -6.8485 -1.8064 23 1 -1.5387 -7.5076 -1.1892 24 6 -3.5067 -6.7827 -1.6301 25 7 -4.2288 -5.9791 -2.3819 26 14 -4.3326 -7.8346 -0.3259 27 1 -4.3822 -7.0859 0.9556 28 1 -5.7136 -8.1664 -0.7592 29 1 -3.5584 -9.0877 -0.1374 30 1 -0.3633 -0.0004 1.0278 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6675 2.1278 0.0004 34 1 5.3047 0.1287 -0.0005 35 1 4.1738 -2.0587 0.0095 36 1 0.5708 -2.4291 0.5899 37 1 2.1247 -3.2831 0.4337 38 1 0.2268 -4.6304 -0.9256 39 1 -1.6735 -3.2654 -2.6064 40 1 -1.1511 -3.2009 -4.3191 41 1 -2.2077 -6.4143 -5.4898 42 1 -1.4435 -4.8254 -5.8165 43 1 0.6383 -5.7212 -5.2164 44 1 -0.1307 -7.3056 -4.8864 45 1 -5.1897 -5.9329 -2.2585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097075479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:38 Heat of formation + Delta-G solvation = 17.472181 kcal Electronic energy + Delta-G solvation = -26606.162129 eV Core-core repulsion = 23009.604290 eV Total energy + Delta-G solvation = -3596.557840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62167 -40.95278 -39.67923 -35.38494 -35.18420 -34.36448 -33.34654 -30.95059 -30.71160 -30.04436 -28.80356 -27.89693 -26.08231 -24.04528 -23.20332 -22.38234 -21.50254 -21.09245 -20.29230 -18.82453 -18.05072 -17.73038 -17.67848 -16.91879 -16.69573 -16.02984 -15.93927 -15.66470 -15.48470 -15.07660 -14.89851 -14.30918 -14.25995 -13.80025 -13.70246 -13.62794 -13.62280 -13.42236 -13.00316 -12.89407 -12.82410 -12.74170 -12.63953 -12.25080 -12.08329 -11.97303 -11.89977 -11.67193 -11.23218 -10.97794 -10.93005 -10.78834 -10.41193 -10.33533 -9.91275 -9.79613 -8.85383 -7.73565 -5.13650 0.22201 0.27059 1.50959 1.52249 1.59779 1.69162 2.33335 2.52187 2.90397 3.39757 3.46735 3.51435 3.63299 3.80788 3.95748 4.02118 4.05204 4.07317 4.09329 4.29321 4.41391 4.46454 4.49615 4.50863 4.55099 4.63509 4.70215 4.72643 4.76925 4.83995 4.89750 4.92629 5.05743 5.09144 5.17696 5.19045 5.19963 5.38688 5.41771 5.53823 5.61869 5.73604 5.81925 5.90804 6.28753 6.68292 7.04262 7.07787 7.32987 7.74935 8.60608 9.33630 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.003505 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.777544 B = 7987.729472 C = 8705.847043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C 0.083 3.917 4 N -0.509 5.509 5 C 0.078 3.922 6 C -0.161 4.161 7 C -0.034 4.034 8 C -0.101 4.101 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.142 3.858 13 H 0.081 0.919 14 C -0.131 4.131 15 C 0.139 3.861 16 H 0.114 0.886 17 C -0.134 4.134 18 C -0.120 4.120 19 C 0.128 3.872 20 H 0.106 0.894 21 N -0.608 5.608 22 C -0.212 4.212 23 H 0.088 0.912 24 C -0.067 4.067 25 N -0.948 5.948 26 Si 0.973 3.027 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.408 0.592 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 6.830 5.096 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.134 4.134 3 C -0.074 4.074 4 N -0.218 5.218 5 C -0.078 4.078 6 C -0.180 4.180 7 C -0.043 4.043 8 C -0.140 4.140 9 C 0.302 3.698 10 O -0.461 6.461 11 N -0.353 5.353 12 C 0.035 3.965 13 H 0.099 0.901 14 C -0.172 4.172 15 C 0.032 3.968 16 H 0.131 0.869 17 C -0.173 4.173 18 C -0.159 4.159 19 C 0.021 3.979 20 H 0.124 0.876 21 N -0.330 5.330 22 C -0.341 4.341 23 H 0.105 0.895 24 C -0.259 4.259 25 N -0.598 5.598 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.231 1.231 29 H -0.196 1.196 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.174 0.826 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.243 0.757 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.648 7.999 4.619 16.479 hybrid contribution -1.574 -1.514 0.658 2.281 sum 12.074 6.484 5.277 14.685 Atomic orbital electron populations 1.20750 0.89643 1.03026 1.03303 1.20975 0.98192 0.93888 1.00296 1.22913 0.89980 0.98085 0.96390 1.67650 1.08844 1.32466 1.12837 1.23122 1.01446 0.87437 0.95772 1.22290 0.94227 1.00698 1.00804 1.19828 0.94189 0.94174 0.96080 1.20741 1.03598 0.95829 0.93849 1.20813 0.76946 0.80535 0.91491 1.90687 1.55775 1.51969 1.47663 1.45966 1.57035 1.22526 1.09805 1.22373 0.95165 0.96248 0.82736 0.90062 1.23291 0.96402 0.98168 0.99326 1.23539 0.99064 0.87008 0.87154 0.86904 1.23278 0.96664 0.99326 0.98038 1.23129 0.96721 1.00309 0.95780 1.23362 0.86996 0.92718 0.94811 0.87642 1.46690 1.01649 1.46358 1.38275 1.19359 0.90447 1.15537 1.08759 0.89476 1.25409 0.96872 1.01644 1.01977 1.69725 1.04912 1.42312 1.42882 0.85148 0.77256 0.78636 0.78677 1.21597 1.23131 1.19638 0.88968 0.90377 0.93089 0.81344 0.80438 0.82632 0.86266 0.84686 0.75650 0.94648 0.92186 0.94375 0.91179 0.90291 0.92151 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.30 71.23 0.66 -1.69 16 2 C -0.13 -3.15 5.90 -19.78 -0.12 -3.27 16 3 C 0.08 1.97 10.86 84.69 0.92 2.89 16 4 N -0.51 -12.94 10.36 -195.83 -2.03 -14.97 16 5 C 0.08 1.69 11.18 84.67 0.95 2.63 16 6 C -0.16 -3.34 9.80 22.36 0.22 -3.12 16 7 C -0.03 -0.80 4.41 -19.67 -0.09 -0.88 16 8 C -0.10 -2.10 5.19 29.10 0.15 -1.95 16 9 C 0.51 15.04 7.15 87.66 0.63 15.67 16 10 O -0.58 -21.49 15.72 -3.05 -0.05 -21.54 16 11 N -0.70 -21.20 5.09 -434.91 -2.21 -23.41 16 12 C 0.14 4.84 2.76 46.61 0.13 4.96 16 13 H 0.08 2.78 7.29 -2.39 -0.02 2.76 16 14 C -0.13 -5.20 6.22 32.21 0.20 -5.00 16 15 C 0.14 6.21 4.67 46.23 0.22 6.43 16 16 H 0.11 6.03 5.52 -2.39 -0.01 6.01 16 17 C -0.13 -5.07 6.58 32.87 0.22 -4.86 16 18 C -0.12 -3.94 6.49 32.87 0.21 -3.73 16 19 C 0.13 4.51 5.06 46.22 0.23 4.75 16 20 H 0.11 3.34 8.14 -2.38 -0.02 3.33 16 21 N -0.61 -27.38 2.99 -615.24 -1.84 -29.22 16 22 C -0.21 -10.58 10.59 84.03 0.89 -9.69 16 23 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 25 N -0.95 -53.44 10.47 21.65 0.23 -53.22 16 26 Si 0.97 43.02 29.55 68.60 2.03 45.05 16 27 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.05 1.29 6.35 -2.39 -0.02 1.28 16 33 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.12 2.21 7.11 -2.39 -0.02 2.19 16 37 H 0.14 1.95 8.07 -2.39 -0.02 1.93 16 38 H 0.41 11.52 8.64 -92.71 -0.80 10.72 16 39 H 0.03 1.53 7.98 -2.39 -0.02 1.51 16 40 H 0.06 2.24 7.81 -2.39 -0.02 2.22 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 2.35 7.81 -2.39 -0.02 2.33 16 43 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.24 13.64 8.31 -92.72 -0.77 12.87 16 Total: -1.00 -67.16 362.51 2.21 -64.95 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.20 Total: 32.23 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.89 Total: 0.13 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -5.86 Total: -120.82 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -67.16 2.21 -64.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097075479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds