Wall clock time and date at job start Tue Mar 31 2020 10:55:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.38150 * 119.55356 * 2 1
4 4 C 1.39820 * 119.00605 * 180.02562 * 3 2 1
5 5 C 1.48150 * 120.92303 * 179.97438 * 4 3 2
6 6 O 1.21514 * 119.99973 * 0.02562 * 5 4 3
7 7 N 1.34779 * 119.99994 * 179.97438 * 5 4 3
8 8 C 1.46496 * 120.00106 * 180.02562 * 7 5 4
9 9 H 1.08997 * 110.68559 * 36.53095 * 8 7 5
10 10 C 1.54857 * 110.62430 * 273.54522 * 8 7 5
11 11 C 1.55841 * 103.44584 * 241.51241 * 10 8 7
12 12 H 1.08995 * 115.56485 * 158.81503 * 11 10 8
13 13 C 1.55848 * 105.06248 * 287.42565 * 11 10 8
14 14 C 1.56686 * 102.60142 * 72.30138 * 13 11 10
15 15 C 1.55845 * 110.62436 * 159.52059 * 8 7 5
16 16 H 1.08990 * 115.56380 * 319.67284 * 15 8 7
17 17 N 1.50235 * 101.05038 * 85.55287 * 15 8 7
18 18 C 1.36939 * 130.83995 * 233.93311 * 17 15 8
19 19 H 1.08002 * 119.99732 * 0.02562 * 18 17 15
20 20 C 1.38812 * 120.00320 * 180.02562 * 18 17 15
21 21 N 1.31616 * 120.00001 * 0.02562 * 20 18 17
22 22 Si 1.86805 * 119.99746 * 179.97438 * 20 18 17
23 23 H 1.48493 * 109.47162 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46678 * 120.00446 * 22 20 18
25 25 H 1.48505 * 109.46789 * 240.00010 * 22 20 18
26 26 C 1.39818 * 118.15245 * 0.24860 * 4 3 2
27 27 C 1.38153 * 119.00056 * 359.48187 * 26 4 3
28 28 C 1.50700 * 119.55226 * 180.27018 * 27 26 4
29 29 N 1.31815 * 120.89639 * 0.53282 * 27 26 4
30 30 H 1.08998 * 109.47232 * 90.00094 * 1 2 3
31 31 H 1.09001 * 109.47015 * 210.00424 * 1 2 3
32 32 H 1.09000 * 109.47474 * 330.00054 * 1 2 3
33 33 H 1.08004 * 120.49926 * 0.02562 * 3 2 1
34 34 H 0.97004 * 119.99423 * 359.97438 * 7 5 4
35 35 H 1.09004 * 110.62191 * 0.02562 * 10 8 7
36 36 H 1.08996 * 110.62419 * 123.01932 * 10 8 7
37 37 H 1.08998 * 110.62815 * 190.32071 * 13 11 10
38 38 H 1.09005 * 110.62507 * 313.33335 * 13 11 10
39 39 H 1.09000 * 110.35057 * 241.21812 * 14 13 11
40 40 H 1.08993 * 110.88556 * 118.36604 * 14 13 11
41 41 H 0.96996 * 119.99711 * 179.97438 * 21 20 18
42 42 H 1.07995 * 120.49864 * 179.72642 * 26 4 3
43 43 H 1.08992 * 109.47228 * 270.26016 * 28 27 26
44 44 H 1.09001 * 109.46640 * 30.26226 * 28 27 26
45 45 H 1.08998 * 109.47117 * 150.25900 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1883 1.2018 0.0000
4 6 3.5865 1.1884 -0.0005
5 6 4.3599 2.4520 -0.0011
6 8 3.7795 3.5196 -0.0007
7 7 5.7072 2.4174 -0.0011
8 6 6.4721 3.6669 -0.0012
9 1 5.9742 4.4230 0.6058
10 6 6.6804 4.1789 -1.4477
11 6 8.2299 4.1734 -1.6144
12 1 8.5923 4.1501 -2.6421
13 6 8.7344 5.3682 -0.7504
14 6 8.5277 4.8442 0.7117
15 6 7.9240 3.4217 0.5092
16 1 8.0171 2.7365 1.3516
17 7 8.6073 2.9969 -0.7596
18 6 9.3471 1.8812 -1.0481
19 1 9.5129 1.1319 -0.2881
20 6 9.8838 1.7132 -2.3171
21 7 9.6822 2.6266 -3.2431
22 14 10.8935 0.1915 -2.7103
23 1 10.9723 -0.6747 -1.5068
24 1 10.2481 -0.5581 -3.8179
25 1 12.2622 0.5977 -3.1189
26 6 4.2343 -0.0506 -0.0064
27 6 3.4740 -1.2041 -0.0005
28 6 4.1594 -2.5462 -0.0005
29 7 2.1571 -1.1467 0.0000
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8900 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.6492 2.1376 0.0004
34 1 6.1705 1.5651 -0.0004
35 1 6.2142 3.5033 -2.1650
36 1 6.2859 5.1889 -1.5580
37 1 9.7895 5.5628 -0.9429
38 1 8.1374 6.2598 -0.9422
39 1 7.8286 5.4851 1.2488
40 1 9.4784 4.7859 1.2416
41 1 10.0576 2.5094 -4.1298
42 1 5.3129 -0.1051 -0.0115
43 1 4.3243 -2.8699 -1.0281
44 1 5.1175 -2.4648 0.5130
45 1 3.5323 -3.2744 0.5137
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001097142534.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:09
Heat of formation + Delta-G solvation = 36.320695 kcal
Electronic energy + Delta-G solvation = -26570.266806 eV
Core-core repulsion = 22974.526300 eV
Total energy + Delta-G solvation = -3595.740507 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.71916 -39.56544 -38.22502 -34.22689 -33.63506 -32.90089 -32.43284 -29.22435
-29.15936 -28.84953 -27.90403 -26.74741 -24.46854 -23.94947 -22.01363 -21.27730
-19.95947 -19.67911 -18.75835 -17.37947 -17.05980 -16.76141 -15.69151 -15.49880
-15.08465 -14.89964 -14.70593 -14.34467 -13.92273 -13.84669 -13.55316 -13.39979
-13.26563 -12.86635 -12.52407 -12.25733 -12.11185 -12.02398 -11.89387 -11.73515
-11.30402 -11.16438 -10.98452 -10.96013 -10.56796 -10.45974 -10.14970 -10.10304
-9.92675 -9.84805 -9.58568 -9.30946 -9.21100 -9.02630 -8.88958 -8.56008
-7.01141 -5.80101 -3.19824 0.72789 0.97838 3.01195 3.31850 3.36770
3.37953 3.40182 3.78865 4.02894 4.35058 4.50170 4.67502 4.94071
4.94990 5.06402 5.24392 5.30126 5.34870 5.40642 5.40952 5.50784
5.51353 5.56908 5.62066 5.78831 5.82402 5.91691 5.97472 5.99227
6.00414 6.06944 6.11118 6.23496 6.36058 6.43735 6.53332 6.55993
6.68196 6.77626 6.89499 7.03252 7.27300 7.41267 7.73370 7.83490
7.86475 8.11584 8.43856 9.01222 9.64696 10.45376 11.28745
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.012814 B = 0.004296 C = 0.003453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2184.587342 B = 6516.749764 C = 8107.515213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C 0.124 3.876
3 C -0.125 4.125
4 C -0.073 4.073
5 C 0.552 3.448
6 O -0.541 6.541
7 N -0.694 5.694
8 C 0.128 3.872
9 H 0.080 0.920
10 C -0.142 4.142
11 C 0.153 3.847
12 H 0.153 0.847
13 C -0.139 4.139
14 C -0.127 4.127
15 C 0.125 3.875
16 H 0.089 0.911
17 N -0.590 5.590
18 C -0.217 4.217
19 H 0.079 0.921
20 C -0.009 4.009
21 N -0.918 5.918
22 Si 0.914 3.086
23 H -0.280 1.280
24 H -0.291 1.291
25 H -0.291 1.291
26 C -0.146 4.146
27 C 0.129 3.871
28 C -0.104 4.104
29 N -0.475 5.475
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.076 0.924
33 H 0.146 0.854
34 H 0.403 0.597
35 H 0.059 0.941
36 H 0.055 0.945
37 H 0.056 0.944
38 H 0.051 0.949
39 H 0.051 0.949
40 H 0.058 0.942
41 H 0.254 0.746
42 H 0.142 0.858
43 H 0.080 0.920
44 H 0.078 0.922
45 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.841 -3.907 7.127 14.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.014 4.014
3 C -0.146 4.146
4 C -0.084 4.084
5 C 0.337 3.663
6 O -0.420 6.420
7 N -0.343 5.343
8 C 0.022 3.978
9 H 0.098 0.902
10 C -0.183 4.183
11 C 0.046 3.954
12 H 0.169 0.831
13 C -0.178 4.178
14 C -0.167 4.167
15 C 0.016 3.984
16 H 0.107 0.893
17 N -0.311 5.311
18 C -0.344 4.344
19 H 0.097 0.903
20 C -0.205 4.205
21 N -0.565 5.565
22 Si 0.745 3.255
23 H -0.206 1.206
24 H -0.218 1.218
25 H -0.218 1.218
26 C -0.166 4.166
27 C -0.009 4.009
28 C -0.161 4.161
29 N -0.187 5.187
30 H 0.097 0.903
31 H 0.096 0.904
32 H 0.095 0.905
33 H 0.163 0.837
34 H 0.238 0.762
35 H 0.077 0.923
36 H 0.073 0.927
37 H 0.074 0.926
38 H 0.069 0.931
39 H 0.070 0.930
40 H 0.077 0.923
41 H 0.065 0.935
42 H 0.159 0.841
43 H 0.099 0.901
44 H 0.097 0.903
45 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -12.483 -4.105 6.929 14.855
hybrid contribution 1.307 -0.307 -0.279 1.371
sum -11.176 -4.411 6.650 13.733
Atomic orbital electron populations
1.20704 0.88413 1.03523 1.03235 1.21230 0.97108 0.87758 0.95287
1.22061 0.93335 0.99912 0.99290 1.20510 0.94497 0.93807 0.99608
1.18142 0.82706 0.88093 0.77346 1.90733 1.70031 1.30677 1.50530
1.45952 1.05044 1.11059 1.72270 1.22723 0.92407 0.84426 0.98280
0.90207 1.23465 1.00657 0.99143 0.94996 1.23725 0.88970 0.83873
0.98807 0.83067 1.23370 1.00502 0.98417 0.95556 1.23165 0.99713
0.96498 0.97310 1.23161 0.89692 0.94441 0.91059 0.89347 1.46535
1.58142 1.20397 1.06031 1.19037 1.23782 0.95658 0.95961 0.90324
1.24706 1.01145 0.98603 0.96000 1.69472 1.49168 1.34162 1.03720
0.86013 0.79692 0.81925 0.77906 1.20555 1.21795 1.21764 1.22231
1.01682 0.92061 1.00650 1.21214 0.89110 0.95749 0.94777 1.20740
0.99909 0.92031 1.03470 1.67207 1.09679 1.29556 1.12230 0.90288
0.90410 0.90514 0.83665 0.76170 0.92255 0.92685 0.92554 0.93067
0.93011 0.92327 0.93540 0.84052 0.90101 0.90299 0.90433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.89 10.17 36.00 0.37 -0.52 16
2 C 0.12 1.55 6.78 -82.63 -0.56 0.99 16
3 C -0.13 -1.71 9.31 -39.02 -0.36 -2.07 16
4 C -0.07 -1.10 5.91 -104.64 -0.62 -1.72 16
5 C 0.55 9.56 7.79 -12.19 -0.10 9.47 16
6 O -0.54 -10.78 16.17 5.35 0.09 -10.69 16
7 N -0.69 -11.90 5.06 -52.24 -0.26 -12.17 16
8 C 0.13 2.34 2.73 -65.43 -0.18 2.16 16
9 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16
10 C -0.14 -2.88 6.22 -24.24 -0.15 -3.03 16
11 C 0.15 3.41 4.67 -62.80 -0.29 3.12 16
12 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16
13 C -0.14 -2.69 6.58 -23.22 -0.15 -2.84 16
14 C -0.13 -2.24 6.49 -23.22 -0.15 -2.39 16
15 C 0.13 2.36 5.04 -62.80 -0.32 2.04 16
16 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16
17 N -0.59 -13.57 2.99 -145.82 -0.44 -14.00 16
18 C -0.22 -5.48 10.59 -15.06 -0.16 -5.64 16
19 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16
20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16
21 N -0.92 -25.25 10.47 55.49 0.58 -24.67 16
22 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16
23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
26 C -0.15 -1.95 9.24 -39.02 -0.36 -2.31 16
27 C 0.13 1.65 6.78 -82.63 -0.56 1.09 16
28 C -0.10 -1.01 10.16 36.01 0.37 -0.65 16
29 N -0.48 -6.37 10.16 -5.79 -0.06 -6.43 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16
33 H 0.15 1.87 7.74 -52.48 -0.41 1.46 16
34 H 0.40 6.56 6.76 -40.82 -0.28 6.29 16
35 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16
36 H 0.05 1.04 7.80 -51.93 -0.40 0.64 16
37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
38 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16
39 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16
40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16
42 H 0.14 1.72 6.54 -52.49 -0.34 1.38 16
43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
44 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16
45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 364.28 15.07 5.49 5.49
Total: -1.00 -30.08 364.28 -9.62 -39.70
By element:
Atomic # 1 Polarization: 16.19 SS G_CDS: -6.67 Total: 9.53 kcal
Atomic # 6 Polarization: 0.70 SS G_CDS: -3.32 Total: -2.63 kcal
Atomic # 7 Polarization: -57.09 SS G_CDS: -0.18 Total: -57.27 kcal
Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -30.08 -9.62 -39.70 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001097142534.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.024 kcal
(2) G-P(sol) polarization free energy of solvation -30.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.321 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds