Wall clock time and date at job start Tue Mar 31 2020 10:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38150 * 119.55356 * 2 1 4 4 C 1.39820 * 119.00605 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92303 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99973 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99994 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00106 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.68559 * 36.53095 * 8 7 5 10 10 C 1.54857 * 110.62430 * 273.54522 * 8 7 5 11 11 C 1.55841 * 103.44584 * 241.51241 * 10 8 7 12 12 H 1.08995 * 115.56485 * 158.81503 * 11 10 8 13 13 C 1.55848 * 105.06248 * 287.42565 * 11 10 8 14 14 C 1.56686 * 102.60142 * 72.30138 * 13 11 10 15 15 C 1.55845 * 110.62436 * 159.52059 * 8 7 5 16 16 H 1.08990 * 115.56380 * 319.67284 * 15 8 7 17 17 N 1.50235 * 101.05038 * 85.55287 * 15 8 7 18 18 C 1.36939 * 130.83995 * 233.93311 * 17 15 8 19 19 H 1.08002 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00320 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47162 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46678 * 120.00446 * 22 20 18 25 25 H 1.48505 * 109.46789 * 240.00010 * 22 20 18 26 26 C 1.39818 * 118.15245 * 0.24860 * 4 3 2 27 27 C 1.38153 * 119.00056 * 359.48187 * 26 4 3 28 28 C 1.50700 * 119.55226 * 180.27018 * 27 26 4 29 29 N 1.31815 * 120.89639 * 0.53282 * 27 26 4 30 30 H 1.08998 * 109.47232 * 90.00094 * 1 2 3 31 31 H 1.09001 * 109.47015 * 210.00424 * 1 2 3 32 32 H 1.09000 * 109.47474 * 330.00054 * 1 2 3 33 33 H 1.08004 * 120.49926 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99423 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.62191 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.62419 * 123.01932 * 10 8 7 37 37 H 1.08998 * 110.62815 * 190.32071 * 13 11 10 38 38 H 1.09005 * 110.62507 * 313.33335 * 13 11 10 39 39 H 1.09000 * 110.35057 * 241.21812 * 14 13 11 40 40 H 1.08993 * 110.88556 * 118.36604 * 14 13 11 41 41 H 0.96996 * 119.99711 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.49864 * 179.72642 * 26 4 3 43 43 H 1.08992 * 109.47228 * 270.26016 * 28 27 26 44 44 H 1.09001 * 109.46640 * 30.26226 * 28 27 26 45 45 H 1.08998 * 109.47117 * 150.25900 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.7795 3.5196 -0.0007 7 7 5.7072 2.4174 -0.0011 8 6 6.4721 3.6669 -0.0012 9 1 5.9742 4.4230 0.6058 10 6 6.6804 4.1789 -1.4477 11 6 8.2299 4.1734 -1.6144 12 1 8.5923 4.1501 -2.6421 13 6 8.7344 5.3682 -0.7504 14 6 8.5277 4.8442 0.7117 15 6 7.9240 3.4217 0.5092 16 1 8.0171 2.7365 1.3516 17 7 8.6073 2.9969 -0.7596 18 6 9.3471 1.8812 -1.0481 19 1 9.5129 1.1319 -0.2881 20 6 9.8838 1.7132 -2.3171 21 7 9.6822 2.6266 -3.2431 22 14 10.8935 0.1915 -2.7103 23 1 10.9723 -0.6747 -1.5068 24 1 10.2481 -0.5581 -3.8179 25 1 12.2622 0.5977 -3.1189 26 6 4.2343 -0.0506 -0.0064 27 6 3.4740 -1.2041 -0.0005 28 6 4.1594 -2.5462 -0.0005 29 7 2.1571 -1.1467 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6492 2.1376 0.0004 34 1 6.1705 1.5651 -0.0004 35 1 6.2142 3.5033 -2.1650 36 1 6.2859 5.1889 -1.5580 37 1 9.7895 5.5628 -0.9429 38 1 8.1374 6.2598 -0.9422 39 1 7.8286 5.4851 1.2488 40 1 9.4784 4.7859 1.2416 41 1 10.0576 2.5094 -4.1298 42 1 5.3129 -0.1051 -0.0115 43 1 4.3243 -2.8699 -1.0281 44 1 5.1175 -2.4648 0.5130 45 1 3.5323 -3.2744 0.5137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097142534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:09 Heat of formation + Delta-G solvation = 36.320695 kcal Electronic energy + Delta-G solvation = -26570.266806 eV Core-core repulsion = 22974.526300 eV Total energy + Delta-G solvation = -3595.740507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71916 -39.56544 -38.22502 -34.22689 -33.63506 -32.90089 -32.43284 -29.22435 -29.15936 -28.84953 -27.90403 -26.74741 -24.46854 -23.94947 -22.01363 -21.27730 -19.95947 -19.67911 -18.75835 -17.37947 -17.05980 -16.76141 -15.69151 -15.49880 -15.08465 -14.89964 -14.70593 -14.34467 -13.92273 -13.84669 -13.55316 -13.39979 -13.26563 -12.86635 -12.52407 -12.25733 -12.11185 -12.02398 -11.89387 -11.73515 -11.30402 -11.16438 -10.98452 -10.96013 -10.56796 -10.45974 -10.14970 -10.10304 -9.92675 -9.84805 -9.58568 -9.30946 -9.21100 -9.02630 -8.88958 -8.56008 -7.01141 -5.80101 -3.19824 0.72789 0.97838 3.01195 3.31850 3.36770 3.37953 3.40182 3.78865 4.02894 4.35058 4.50170 4.67502 4.94071 4.94990 5.06402 5.24392 5.30126 5.34870 5.40642 5.40952 5.50784 5.51353 5.56908 5.62066 5.78831 5.82402 5.91691 5.97472 5.99227 6.00414 6.06944 6.11118 6.23496 6.36058 6.43735 6.53332 6.55993 6.68196 6.77626 6.89499 7.03252 7.27300 7.41267 7.73370 7.83490 7.86475 8.11584 8.43856 9.01222 9.64696 10.45376 11.28745 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.004296 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.587342 B = 6516.749764 C = 8107.515213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.124 3.876 3 C -0.125 4.125 4 C -0.073 4.073 5 C 0.552 3.448 6 O -0.541 6.541 7 N -0.694 5.694 8 C 0.128 3.872 9 H 0.080 0.920 10 C -0.142 4.142 11 C 0.153 3.847 12 H 0.153 0.847 13 C -0.139 4.139 14 C -0.127 4.127 15 C 0.125 3.875 16 H 0.089 0.911 17 N -0.590 5.590 18 C -0.217 4.217 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.146 4.146 27 C 0.129 3.871 28 C -0.104 4.104 29 N -0.475 5.475 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.254 0.746 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 -3.907 7.127 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.146 4.146 4 C -0.084 4.084 5 C 0.337 3.663 6 O -0.420 6.420 7 N -0.343 5.343 8 C 0.022 3.978 9 H 0.098 0.902 10 C -0.183 4.183 11 C 0.046 3.954 12 H 0.169 0.831 13 C -0.178 4.178 14 C -0.167 4.167 15 C 0.016 3.984 16 H 0.107 0.893 17 N -0.311 5.311 18 C -0.344 4.344 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.166 4.166 27 C -0.009 4.009 28 C -0.161 4.161 29 N -0.187 5.187 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.238 0.762 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.159 0.841 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.483 -4.105 6.929 14.855 hybrid contribution 1.307 -0.307 -0.279 1.371 sum -11.176 -4.411 6.650 13.733 Atomic orbital electron populations 1.20704 0.88413 1.03523 1.03235 1.21230 0.97108 0.87758 0.95287 1.22061 0.93335 0.99912 0.99290 1.20510 0.94497 0.93807 0.99608 1.18142 0.82706 0.88093 0.77346 1.90733 1.70031 1.30677 1.50530 1.45952 1.05044 1.11059 1.72270 1.22723 0.92407 0.84426 0.98280 0.90207 1.23465 1.00657 0.99143 0.94996 1.23725 0.88970 0.83873 0.98807 0.83067 1.23370 1.00502 0.98417 0.95556 1.23165 0.99713 0.96498 0.97310 1.23161 0.89692 0.94441 0.91059 0.89347 1.46535 1.58142 1.20397 1.06031 1.19037 1.23782 0.95658 0.95961 0.90324 1.24706 1.01145 0.98603 0.96000 1.69472 1.49168 1.34162 1.03720 0.86013 0.79692 0.81925 0.77906 1.20555 1.21795 1.21764 1.22231 1.01682 0.92061 1.00650 1.21214 0.89110 0.95749 0.94777 1.20740 0.99909 0.92031 1.03470 1.67207 1.09679 1.29556 1.12230 0.90288 0.90410 0.90514 0.83665 0.76170 0.92255 0.92685 0.92554 0.93067 0.93011 0.92327 0.93540 0.84052 0.90101 0.90299 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 36.00 0.37 -0.52 16 2 C 0.12 1.55 6.78 -82.63 -0.56 0.99 16 3 C -0.13 -1.71 9.31 -39.02 -0.36 -2.07 16 4 C -0.07 -1.10 5.91 -104.64 -0.62 -1.72 16 5 C 0.55 9.56 7.79 -12.19 -0.10 9.47 16 6 O -0.54 -10.78 16.17 5.35 0.09 -10.69 16 7 N -0.69 -11.90 5.06 -52.24 -0.26 -12.17 16 8 C 0.13 2.34 2.73 -65.43 -0.18 2.16 16 9 H 0.08 1.46 7.36 -51.93 -0.38 1.08 16 10 C -0.14 -2.88 6.22 -24.24 -0.15 -3.03 16 11 C 0.15 3.41 4.67 -62.80 -0.29 3.12 16 12 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 13 C -0.14 -2.69 6.58 -23.22 -0.15 -2.84 16 14 C -0.13 -2.24 6.49 -23.22 -0.15 -2.39 16 15 C 0.13 2.36 5.04 -62.80 -0.32 2.04 16 16 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 17 N -0.59 -13.57 2.99 -145.82 -0.44 -14.00 16 18 C -0.22 -5.48 10.59 -15.06 -0.16 -5.64 16 19 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -25.25 10.47 55.49 0.58 -24.67 16 22 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.15 -1.95 9.24 -39.02 -0.36 -2.31 16 27 C 0.13 1.65 6.78 -82.63 -0.56 1.09 16 28 C -0.10 -1.01 10.16 36.01 0.37 -0.65 16 29 N -0.48 -6.37 10.16 -5.79 -0.06 -6.43 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.15 1.87 7.74 -52.48 -0.41 1.46 16 34 H 0.40 6.56 6.76 -40.82 -0.28 6.29 16 35 H 0.06 1.31 7.98 -51.93 -0.41 0.90 16 36 H 0.05 1.04 7.80 -51.93 -0.40 0.64 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 39 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.14 1.72 6.54 -52.49 -0.34 1.38 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -30.08 364.28 -9.62 -39.70 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.67 Total: 9.53 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.32 Total: -2.63 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.18 Total: -57.27 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.08 -9.62 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097142534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.024 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds