Wall clock time and date at job start Tue Mar 31 2020 10:55:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.38150 * 119.55356 * 2 1
4 4 C 1.39820 * 119.00605 * 180.02562 * 3 2 1
5 5 C 1.48150 * 120.92303 * 179.97438 * 4 3 2
6 6 O 1.21514 * 119.99973 * 0.02562 * 5 4 3
7 7 N 1.34779 * 119.99994 * 179.97438 * 5 4 3
8 8 C 1.46496 * 120.00106 * 180.02562 * 7 5 4
9 9 H 1.08997 * 110.68559 * 36.53095 * 8 7 5
10 10 C 1.54857 * 110.62430 * 273.54522 * 8 7 5
11 11 C 1.55841 * 103.44584 * 241.51241 * 10 8 7
12 12 H 1.08995 * 115.56485 * 158.81503 * 11 10 8
13 13 C 1.55848 * 105.06248 * 287.42565 * 11 10 8
14 14 C 1.56686 * 102.60142 * 72.30138 * 13 11 10
15 15 C 1.55845 * 110.62436 * 159.52059 * 8 7 5
16 16 H 1.08990 * 115.56380 * 319.67284 * 15 8 7
17 17 N 1.50235 * 101.05038 * 85.55287 * 15 8 7
18 18 C 1.36939 * 130.83995 * 233.93311 * 17 15 8
19 19 H 1.08002 * 119.99732 * 0.02562 * 18 17 15
20 20 C 1.38812 * 120.00320 * 180.02562 * 18 17 15
21 21 N 1.31616 * 120.00001 * 0.02562 * 20 18 17
22 22 Si 1.86805 * 119.99746 * 179.97438 * 20 18 17
23 23 H 1.48493 * 109.47162 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46678 * 120.00446 * 22 20 18
25 25 H 1.48505 * 109.46789 * 240.00010 * 22 20 18
26 26 C 1.39818 * 118.15245 * 0.24860 * 4 3 2
27 27 C 1.38153 * 119.00056 * 359.48187 * 26 4 3
28 28 C 1.50700 * 119.55226 * 180.27018 * 27 26 4
29 29 N 1.31815 * 120.89639 * 0.53282 * 27 26 4
30 30 H 1.08998 * 109.47232 * 90.00094 * 1 2 3
31 31 H 1.09001 * 109.47015 * 210.00424 * 1 2 3
32 32 H 1.09000 * 109.47474 * 330.00054 * 1 2 3
33 33 H 1.08004 * 120.49926 * 0.02562 * 3 2 1
34 34 H 0.97004 * 119.99423 * 359.97438 * 7 5 4
35 35 H 1.09004 * 110.62191 * 0.02562 * 10 8 7
36 36 H 1.08996 * 110.62419 * 123.01932 * 10 8 7
37 37 H 1.08998 * 110.62815 * 190.32071 * 13 11 10
38 38 H 1.09005 * 110.62507 * 313.33335 * 13 11 10
39 39 H 1.09000 * 110.35057 * 241.21812 * 14 13 11
40 40 H 1.08993 * 110.88556 * 118.36604 * 14 13 11
41 41 H 0.96996 * 119.99711 * 179.97438 * 21 20 18
42 42 H 1.07995 * 120.49864 * 179.72642 * 26 4 3
43 43 H 1.08992 * 109.47228 * 270.26016 * 28 27 26
44 44 H 1.09001 * 109.46640 * 30.26226 * 28 27 26
45 45 H 1.08998 * 109.47117 * 150.25900 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1883 1.2018 0.0000
4 6 3.5865 1.1884 -0.0005
5 6 4.3599 2.4520 -0.0011
6 8 3.7795 3.5196 -0.0007
7 7 5.7072 2.4174 -0.0011
8 6 6.4721 3.6669 -0.0012
9 1 5.9742 4.4230 0.6058
10 6 6.6804 4.1789 -1.4477
11 6 8.2299 4.1734 -1.6144
12 1 8.5923 4.1501 -2.6421
13 6 8.7344 5.3682 -0.7504
14 6 8.5277 4.8442 0.7117
15 6 7.9240 3.4217 0.5092
16 1 8.0171 2.7365 1.3516
17 7 8.6073 2.9969 -0.7596
18 6 9.3471 1.8812 -1.0481
19 1 9.5129 1.1319 -0.2881
20 6 9.8838 1.7132 -2.3171
21 7 9.6822 2.6266 -3.2431
22 14 10.8935 0.1915 -2.7103
23 1 10.9723 -0.6747 -1.5068
24 1 10.2481 -0.5581 -3.8179
25 1 12.2622 0.5977 -3.1189
26 6 4.2343 -0.0506 -0.0064
27 6 3.4740 -1.2041 -0.0005
28 6 4.1594 -2.5462 -0.0005
29 7 2.1571 -1.1467 0.0000
30 1 -0.3633 0.0000 -1.0276
31 1 -0.3633 -0.8900 0.5139
32 1 -0.3634 0.8900 0.5138
33 1 1.6492 2.1376 0.0004
34 1 6.1705 1.5651 -0.0004
35 1 6.2142 3.5033 -2.1650
36 1 6.2859 5.1889 -1.5580
37 1 9.7895 5.5628 -0.9429
38 1 8.1374 6.2598 -0.9422
39 1 7.8286 5.4851 1.2488
40 1 9.4784 4.7859 1.2416
41 1 10.0576 2.5094 -4.1298
42 1 5.3129 -0.1051 -0.0115
43 1 4.3243 -2.8699 -1.0281
44 1 5.1175 -2.4648 0.5130
45 1 3.5323 -3.2744 0.5137
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001097142534.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:55:08
Heat of formation + Delta-G solvation = 19.000451 kcal
Electronic energy + Delta-G solvation = -26571.017869 eV
Core-core repulsion = 22974.526300 eV
Total energy + Delta-G solvation = -3596.491569 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.86756 -40.97011 -39.67232 -35.56325 -34.72021 -34.44893 -33.80039 -30.96881
-30.39149 -30.01929 -29.42814 -27.67728 -26.19511 -25.30257 -22.99738 -22.64591
-21.57051 -21.11899 -20.33265 -18.84880 -18.59870 -17.94121 -16.89061 -16.78254
-16.68540 -16.23125 -15.96299 -15.75488 -15.39524 -15.18922 -14.90579 -14.48188
-14.15085 -14.08005 -13.72333 -13.67313 -13.26546 -12.95844 -12.95316 -12.91167
-12.82986 -12.76884 -12.72483 -12.65894 -12.10769 -11.96816 -11.88907 -11.71916
-11.47125 -11.06197 -10.96339 -10.94658 -10.83982 -10.53740 -10.04463 -9.84645
-8.87877 -7.75291 -5.15580 -0.38908 -0.01007 1.49488 1.50851 1.59499
1.76205 2.06021 2.50629 2.70828 3.16267 3.37304 3.42520 3.45208
3.62943 3.90899 3.96392 3.98502 4.04037 4.26726 4.32664 4.42813
4.44914 4.48012 4.51813 4.61024 4.66735 4.73532 4.74887 4.80051
4.81811 4.88813 4.97198 5.03201 5.06277 5.13441 5.15903 5.16987
5.21269 5.37677 5.49330 5.55984 5.62173 5.68050 5.88798 6.26978
6.46974 6.86959 7.05220 7.07661 7.73161 8.58397 9.32125
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.012814 B = 0.004296 C = 0.003453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2184.587342 B = 6516.749764 C = 8107.515213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.123 3.877
3 C -0.134 4.134
4 C -0.091 4.091
5 C 0.553 3.447
6 O -0.570 6.570
7 N -0.692 5.692
8 C 0.138 3.862
9 H 0.090 0.910
10 C -0.133 4.133
11 C 0.139 3.861
12 H 0.114 0.886
13 C -0.132 4.132
14 C -0.118 4.118
15 C 0.128 3.872
16 H 0.106 0.894
17 N -0.609 5.609
18 C -0.212 4.212
19 H 0.089 0.911
20 C -0.067 4.067
21 N -0.948 5.948
22 Si 0.972 3.028
23 H -0.262 1.262
24 H -0.299 1.299
25 H -0.301 1.301
26 C -0.150 4.150
27 C 0.125 3.875
28 C -0.103 4.103
29 N -0.487 5.487
30 H 0.090 0.910
31 H 0.085 0.915
32 H 0.093 0.907
33 H 0.149 0.851
34 H 0.407 0.593
35 H 0.030 0.970
36 H 0.067 0.933
37 H 0.039 0.961
38 H 0.072 0.928
39 H 0.082 0.918
40 H 0.062 0.938
41 H 0.244 0.756
42 H 0.150 0.850
43 H 0.087 0.913
44 H 0.093 0.907
45 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.810 -4.808 9.015 16.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.014 4.014
3 C -0.155 4.155
4 C -0.101 4.101
5 C 0.340 3.660
6 O -0.451 6.451
7 N -0.341 5.341
8 C 0.031 3.969
9 H 0.108 0.892
10 C -0.173 4.173
11 C 0.032 3.968
12 H 0.131 0.869
13 C -0.172 4.172
14 C -0.158 4.158
15 C 0.021 3.979
16 H 0.124 0.876
17 N -0.331 5.331
18 C -0.341 4.341
19 H 0.106 0.894
20 C -0.259 4.259
21 N -0.598 5.598
22 Si 0.802 3.198
23 H -0.187 1.187
24 H -0.227 1.227
25 H -0.229 1.229
26 C -0.171 4.171
27 C -0.013 4.013
28 C -0.160 4.160
29 N -0.199 5.199
30 H 0.108 0.892
31 H 0.104 0.896
32 H 0.112 0.888
33 H 0.167 0.833
34 H 0.243 0.757
35 H 0.049 0.951
36 H 0.085 0.915
37 H 0.057 0.943
38 H 0.091 0.909
39 H 0.100 0.900
40 H 0.081 0.919
41 H 0.054 0.946
42 H 0.168 0.832
43 H 0.105 0.895
44 H 0.111 0.889
45 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -13.462 -5.018 8.860 16.880
hybrid contribution 1.540 -0.020 -0.856 1.762
sum -11.922 -5.038 8.004 15.218
Atomic orbital electron populations
1.20816 0.85796 1.04760 1.04299 1.21776 0.98816 0.87034 0.93815
1.22207 0.92945 1.00700 0.99633 1.20429 0.95027 0.93219 1.01472
1.18467 0.82603 0.88603 0.76294 1.90706 1.70500 1.31947 1.51950
1.45896 1.05155 1.10877 1.72173 1.22565 0.92408 0.85142 0.96737
0.89243 1.23324 0.98966 0.99271 0.95762 1.23555 0.90251 0.85316
0.97682 0.86864 1.23273 0.99651 0.98006 0.96238 1.23120 1.00617
0.95861 0.96165 1.23375 0.89182 0.95425 0.89951 0.87571 1.46720
1.58302 1.20117 1.07932 1.19407 1.22550 0.96279 0.95877 0.89355
1.25419 1.03046 1.01086 0.96356 1.69731 1.50671 1.35811 1.03604
0.85089 0.77548 0.79391 0.77791 1.18658 1.22689 1.22890 1.22344
1.02204 0.91775 1.00771 1.21700 0.89135 0.96756 0.93699 1.20830
1.00460 0.90523 1.04178 1.67339 1.10033 1.29903 1.12583 0.89152
0.89648 0.88823 0.83324 0.75681 0.95076 0.91486 0.94251 0.90906
0.89969 0.91943 0.94614 0.83215 0.89476 0.88873 0.89573
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.53 10.17 71.23 0.72 -0.80 16
2 C 0.12 2.89 6.78 42.54 0.29 3.18 16
3 C -0.13 -3.54 9.31 22.63 0.21 -3.33 16
4 C -0.09 -2.66 5.91 -19.88 -0.12 -2.78 16
5 C 0.55 18.89 7.79 86.88 0.68 19.56 16
6 O -0.57 -22.45 16.17 -3.76 -0.06 -22.51 16
7 N -0.69 -23.11 5.06 -437.48 -2.21 -25.32 16
8 C 0.14 4.85 2.73 46.61 0.13 4.98 16
9 H 0.09 3.05 7.36 -2.39 -0.02 3.03 16
10 C -0.13 -5.37 6.22 32.21 0.20 -5.17 16
11 C 0.14 6.25 4.67 46.23 0.22 6.47 16
12 H 0.11 6.10 5.52 -2.39 -0.01 6.08 16
13 C -0.13 -4.98 6.58 32.87 0.22 -4.76 16
14 C -0.12 -3.84 6.49 32.87 0.21 -3.63 16
15 C 0.13 4.55 5.04 46.23 0.23 4.79 16
16 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16
17 N -0.61 -27.74 2.99 -615.26 -1.84 -29.58 16
18 C -0.21 -10.67 10.59 84.03 0.89 -9.78 16
19 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16
20 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16
21 N -0.95 -53.98 10.47 21.65 0.23 -53.75 16
22 Si 0.97 43.36 29.55 68.60 2.03 45.39 16
23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16
24 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16
25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16
26 C -0.15 -3.88 9.24 22.63 0.21 -3.67 16
27 C 0.12 2.99 6.78 42.54 0.29 3.27 16
28 C -0.10 -1.78 10.16 71.24 0.72 -1.05 16
29 N -0.49 -12.26 10.16 -172.23 -1.75 -14.01 16
30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16
33 H 0.15 3.73 7.74 -2.91 -0.02 3.71 16
34 H 0.41 12.87 6.76 -92.71 -0.63 12.25 16
35 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16
36 H 0.07 2.50 7.80 -2.39 -0.02 2.48 16
37 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16
38 H 0.07 2.39 7.81 -2.38 -0.02 2.37 16
39 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16
40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
41 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16
42 H 0.15 3.48 6.54 -2.91 -0.02 3.46 16
43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
44 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16
45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -65.49 364.28 2.34 -63.16
By element:
Atomic # 1 Polarization: 32.04 SS G_CDS: 0.38 Total: 32.42 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: 5.57 Total: 4.20 kcal
Atomic # 7 Polarization: -117.08 SS G_CDS: -5.58 Total: -122.66 kcal
Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal
Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal
Total: -65.49 2.34 -63.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001097142534.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.159 kcal
(2) G-P(sol) polarization free energy of solvation -65.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds