Wall clock time and date at job start Tue Mar 31 2020 10:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38150 * 119.55356 * 2 1 4 4 C 1.39820 * 119.00605 * 180.02562 * 3 2 1 5 5 C 1.48150 * 120.92303 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99973 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99994 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00106 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.68559 * 36.53095 * 8 7 5 10 10 C 1.54857 * 110.62430 * 273.54522 * 8 7 5 11 11 C 1.55841 * 103.44584 * 241.51241 * 10 8 7 12 12 H 1.08995 * 115.56485 * 158.81503 * 11 10 8 13 13 C 1.55848 * 105.06248 * 287.42565 * 11 10 8 14 14 C 1.56686 * 102.60142 * 72.30138 * 13 11 10 15 15 C 1.55845 * 110.62436 * 159.52059 * 8 7 5 16 16 H 1.08990 * 115.56380 * 319.67284 * 15 8 7 17 17 N 1.50235 * 101.05038 * 85.55287 * 15 8 7 18 18 C 1.36939 * 130.83995 * 233.93311 * 17 15 8 19 19 H 1.08002 * 119.99732 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00320 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00001 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47162 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46678 * 120.00446 * 22 20 18 25 25 H 1.48505 * 109.46789 * 240.00010 * 22 20 18 26 26 C 1.39818 * 118.15245 * 0.24860 * 4 3 2 27 27 C 1.38153 * 119.00056 * 359.48187 * 26 4 3 28 28 C 1.50700 * 119.55226 * 180.27018 * 27 26 4 29 29 N 1.31815 * 120.89639 * 0.53282 * 27 26 4 30 30 H 1.08998 * 109.47232 * 90.00094 * 1 2 3 31 31 H 1.09001 * 109.47015 * 210.00424 * 1 2 3 32 32 H 1.09000 * 109.47474 * 330.00054 * 1 2 3 33 33 H 1.08004 * 120.49926 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99423 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.62191 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.62419 * 123.01932 * 10 8 7 37 37 H 1.08998 * 110.62815 * 190.32071 * 13 11 10 38 38 H 1.09005 * 110.62507 * 313.33335 * 13 11 10 39 39 H 1.09000 * 110.35057 * 241.21812 * 14 13 11 40 40 H 1.08993 * 110.88556 * 118.36604 * 14 13 11 41 41 H 0.96996 * 119.99711 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.49864 * 179.72642 * 26 4 3 43 43 H 1.08992 * 109.47228 * 270.26016 * 28 27 26 44 44 H 1.09001 * 109.46640 * 30.26226 * 28 27 26 45 45 H 1.08998 * 109.47117 * 150.25900 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.7795 3.5196 -0.0007 7 7 5.7072 2.4174 -0.0011 8 6 6.4721 3.6669 -0.0012 9 1 5.9742 4.4230 0.6058 10 6 6.6804 4.1789 -1.4477 11 6 8.2299 4.1734 -1.6144 12 1 8.5923 4.1501 -2.6421 13 6 8.7344 5.3682 -0.7504 14 6 8.5277 4.8442 0.7117 15 6 7.9240 3.4217 0.5092 16 1 8.0171 2.7365 1.3516 17 7 8.6073 2.9969 -0.7596 18 6 9.3471 1.8812 -1.0481 19 1 9.5129 1.1319 -0.2881 20 6 9.8838 1.7132 -2.3171 21 7 9.6822 2.6266 -3.2431 22 14 10.8935 0.1915 -2.7103 23 1 10.9723 -0.6747 -1.5068 24 1 10.2481 -0.5581 -3.8179 25 1 12.2622 0.5977 -3.1189 26 6 4.2343 -0.0506 -0.0064 27 6 3.4740 -1.2041 -0.0005 28 6 4.1594 -2.5462 -0.0005 29 7 2.1571 -1.1467 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6492 2.1376 0.0004 34 1 6.1705 1.5651 -0.0004 35 1 6.2142 3.5033 -2.1650 36 1 6.2859 5.1889 -1.5580 37 1 9.7895 5.5628 -0.9429 38 1 8.1374 6.2598 -0.9422 39 1 7.8286 5.4851 1.2488 40 1 9.4784 4.7859 1.2416 41 1 10.0576 2.5094 -4.1298 42 1 5.3129 -0.1051 -0.0115 43 1 4.3243 -2.8699 -1.0281 44 1 5.1175 -2.4648 0.5130 45 1 3.5323 -3.2744 0.5137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097142534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:08 Heat of formation + Delta-G solvation = 19.000451 kcal Electronic energy + Delta-G solvation = -26571.017869 eV Core-core repulsion = 22974.526300 eV Total energy + Delta-G solvation = -3596.491569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.86756 -40.97011 -39.67232 -35.56325 -34.72021 -34.44893 -33.80039 -30.96881 -30.39149 -30.01929 -29.42814 -27.67728 -26.19511 -25.30257 -22.99738 -22.64591 -21.57051 -21.11899 -20.33265 -18.84880 -18.59870 -17.94121 -16.89061 -16.78254 -16.68540 -16.23125 -15.96299 -15.75488 -15.39524 -15.18922 -14.90579 -14.48188 -14.15085 -14.08005 -13.72333 -13.67313 -13.26546 -12.95844 -12.95316 -12.91167 -12.82986 -12.76884 -12.72483 -12.65894 -12.10769 -11.96816 -11.88907 -11.71916 -11.47125 -11.06197 -10.96339 -10.94658 -10.83982 -10.53740 -10.04463 -9.84645 -8.87877 -7.75291 -5.15580 -0.38908 -0.01007 1.49488 1.50851 1.59499 1.76205 2.06021 2.50629 2.70828 3.16267 3.37304 3.42520 3.45208 3.62943 3.90899 3.96392 3.98502 4.04037 4.26726 4.32664 4.42813 4.44914 4.48012 4.51813 4.61024 4.66735 4.73532 4.74887 4.80051 4.81811 4.88813 4.97198 5.03201 5.06277 5.13441 5.15903 5.16987 5.21269 5.37677 5.49330 5.55984 5.62173 5.68050 5.88798 6.26978 6.46974 6.86959 7.05220 7.07661 7.73161 8.58397 9.32125 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.004296 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.587342 B = 6516.749764 C = 8107.515213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.091 4.091 5 C 0.553 3.447 6 O -0.570 6.570 7 N -0.692 5.692 8 C 0.138 3.862 9 H 0.090 0.910 10 C -0.133 4.133 11 C 0.139 3.861 12 H 0.114 0.886 13 C -0.132 4.132 14 C -0.118 4.118 15 C 0.128 3.872 16 H 0.106 0.894 17 N -0.609 5.609 18 C -0.212 4.212 19 H 0.089 0.911 20 C -0.067 4.067 21 N -0.948 5.948 22 Si 0.972 3.028 23 H -0.262 1.262 24 H -0.299 1.299 25 H -0.301 1.301 26 C -0.150 4.150 27 C 0.125 3.875 28 C -0.103 4.103 29 N -0.487 5.487 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.407 0.593 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.244 0.756 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -4.808 9.015 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.014 4.014 3 C -0.155 4.155 4 C -0.101 4.101 5 C 0.340 3.660 6 O -0.451 6.451 7 N -0.341 5.341 8 C 0.031 3.969 9 H 0.108 0.892 10 C -0.173 4.173 11 C 0.032 3.968 12 H 0.131 0.869 13 C -0.172 4.172 14 C -0.158 4.158 15 C 0.021 3.979 16 H 0.124 0.876 17 N -0.331 5.331 18 C -0.341 4.341 19 H 0.106 0.894 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.227 1.227 25 H -0.229 1.229 26 C -0.171 4.171 27 C -0.013 4.013 28 C -0.160 4.160 29 N -0.199 5.199 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.243 0.757 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.462 -5.018 8.860 16.880 hybrid contribution 1.540 -0.020 -0.856 1.762 sum -11.922 -5.038 8.004 15.218 Atomic orbital electron populations 1.20816 0.85796 1.04760 1.04299 1.21776 0.98816 0.87034 0.93815 1.22207 0.92945 1.00700 0.99633 1.20429 0.95027 0.93219 1.01472 1.18467 0.82603 0.88603 0.76294 1.90706 1.70500 1.31947 1.51950 1.45896 1.05155 1.10877 1.72173 1.22565 0.92408 0.85142 0.96737 0.89243 1.23324 0.98966 0.99271 0.95762 1.23555 0.90251 0.85316 0.97682 0.86864 1.23273 0.99651 0.98006 0.96238 1.23120 1.00617 0.95861 0.96165 1.23375 0.89182 0.95425 0.89951 0.87571 1.46720 1.58302 1.20117 1.07932 1.19407 1.22550 0.96279 0.95877 0.89355 1.25419 1.03046 1.01086 0.96356 1.69731 1.50671 1.35811 1.03604 0.85089 0.77548 0.79391 0.77791 1.18658 1.22689 1.22890 1.22344 1.02204 0.91775 1.00771 1.21700 0.89135 0.96756 0.93699 1.20830 1.00460 0.90523 1.04178 1.67339 1.10033 1.29903 1.12583 0.89152 0.89648 0.88823 0.83324 0.75681 0.95076 0.91486 0.94251 0.90906 0.89969 0.91943 0.94614 0.83215 0.89476 0.88873 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.17 71.23 0.72 -0.80 16 2 C 0.12 2.89 6.78 42.54 0.29 3.18 16 3 C -0.13 -3.54 9.31 22.63 0.21 -3.33 16 4 C -0.09 -2.66 5.91 -19.88 -0.12 -2.78 16 5 C 0.55 18.89 7.79 86.88 0.68 19.56 16 6 O -0.57 -22.45 16.17 -3.76 -0.06 -22.51 16 7 N -0.69 -23.11 5.06 -437.48 -2.21 -25.32 16 8 C 0.14 4.85 2.73 46.61 0.13 4.98 16 9 H 0.09 3.05 7.36 -2.39 -0.02 3.03 16 10 C -0.13 -5.37 6.22 32.21 0.20 -5.17 16 11 C 0.14 6.25 4.67 46.23 0.22 6.47 16 12 H 0.11 6.10 5.52 -2.39 -0.01 6.08 16 13 C -0.13 -4.98 6.58 32.87 0.22 -4.76 16 14 C -0.12 -3.84 6.49 32.87 0.21 -3.63 16 15 C 0.13 4.55 5.04 46.23 0.23 4.79 16 16 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 17 N -0.61 -27.74 2.99 -615.26 -1.84 -29.58 16 18 C -0.21 -10.67 10.59 84.03 0.89 -9.78 16 19 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 21 N -0.95 -53.98 10.47 21.65 0.23 -53.75 16 22 Si 0.97 43.36 29.55 68.60 2.03 45.39 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 C -0.15 -3.88 9.24 22.63 0.21 -3.67 16 27 C 0.12 2.99 6.78 42.54 0.29 3.27 16 28 C -0.10 -1.78 10.16 71.24 0.72 -1.05 16 29 N -0.49 -12.26 10.16 -172.23 -1.75 -14.01 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.15 3.73 7.74 -2.91 -0.02 3.71 16 34 H 0.41 12.87 6.76 -92.71 -0.63 12.25 16 35 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 36 H 0.07 2.50 7.80 -2.39 -0.02 2.48 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.39 7.81 -2.38 -0.02 2.37 16 39 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 42 H 0.15 3.48 6.54 -2.91 -0.02 3.46 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.49 364.28 2.34 -63.16 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.38 Total: 32.42 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.57 Total: 4.20 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.58 Total: -122.66 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.49 2.34 -63.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097142534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.159 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds