Wall clock time and date at job start Tue Mar 31 2020 11:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38608 * 119.55241 * 2 1 4 4 C 1.38586 * 119.35156 * 180.25639 * 3 2 1 5 5 C 1.38630 * 118.48676 * 359.43892 * 4 3 2 6 6 C 1.39269 * 119.06017 * 0.58018 * 5 4 3 7 7 C 1.48169 * 119.72188 * 179.70551 * 6 5 4 8 8 O 1.21520 * 120.00172 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00220 * 179.97438 * 9 7 6 11 11 C 1.54327 * 111.69312 * 298.98528 * 10 9 7 12 12 C 1.55051 * 103.93896 * 262.79002 * 11 10 9 13 13 C 1.55064 * 102.10897 * 319.94309 * 12 11 10 14 14 C 1.54322 * 103.93424 * 40.05558 * 13 12 11 15 15 H 1.09003 * 111.01313 * 96.81224 * 14 13 12 16 16 C 1.53774 * 109.79046 * 221.68637 * 14 13 12 17 17 N 1.47217 * 106.37732 * 95.21971 * 16 14 13 18 18 C 1.36933 * 126.70791 * 211.28677 * 17 16 14 19 19 H 1.07995 * 120.00687 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99524 * 359.97438 * 18 17 16 21 21 N 1.31624 * 120.00202 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46980 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47403 * 119.99623 * 22 20 18 25 25 H 1.48503 * 109.47106 * 239.99863 * 22 20 18 26 26 C 1.48674 * 107.09041 * 30.74365 * 17 16 14 27 27 N 1.31503 * 119.54826 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47129 * 89.99509 * 1 2 3 29 29 H 1.09002 * 109.47160 * 210.00101 * 1 2 3 30 30 H 1.09007 * 109.46905 * 330.00027 * 1 2 3 31 31 H 1.08002 * 120.31982 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.75193 * 179.69953 * 4 3 2 33 33 H 1.07997 * 120.46908 * 180.25871 * 5 4 3 34 34 H 0.97000 * 120.00217 * 0.02562 * 9 7 6 35 35 H 1.08998 * 110.53232 * 21.40075 * 11 10 9 36 36 H 1.08996 * 110.53555 * 144.17120 * 11 10 9 37 37 H 1.08992 * 110.90755 * 78.14646 * 12 11 10 38 38 H 1.09002 * 110.90699 * 201.74321 * 12 11 10 39 39 H 1.09004 * 110.53186 * 158.67312 * 13 12 11 40 40 H 1.09002 * 110.53215 * 281.44290 * 13 12 11 41 41 H 1.08991 * 110.07853 * 214.44656 * 16 14 13 42 42 H 1.08996 * 110.07639 * 335.94001 * 16 14 13 43 43 H 0.96998 * 119.99467 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.91378 * 210.52667 * 26 17 16 45 45 H 1.08998 * 109.94878 * 88.51833 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2009 -0.0054 5 6 4.2334 -0.0198 0.0013 6 6 3.4820 -1.1924 0.0008 7 6 4.1691 -2.5052 0.0013 8 8 5.3832 -2.5555 0.0016 9 7 3.4475 -3.6435 0.0013 10 6 4.1268 -4.9414 0.0012 11 6 5.0069 -5.1246 -1.2532 12 6 4.1141 -5.9457 -2.2191 13 6 3.4376 -6.9561 -1.2570 14 6 3.1192 -6.1176 -0.0012 15 1 2.0874 -5.7662 -0.0172 16 6 3.4413 -6.9309 1.2634 17 7 4.8018 -6.5432 1.6709 18 6 5.7240 -7.3347 2.3020 19 1 6.6963 -6.9368 2.5521 20 6 5.4089 -8.6485 2.6205 21 7 4.2237 -9.1334 2.3163 22 14 6.6666 -9.7281 3.4822 23 1 7.9112 -8.9513 3.7119 24 1 6.1187 -10.1827 4.7854 25 1 6.9698 -10.9085 2.6338 26 6 4.9958 -5.1288 1.2560 27 7 2.1555 -1.1440 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.6485 2.1399 -0.0004 32 1 4.1319 2.1271 -0.0104 33 1 5.3126 -0.0609 0.0016 34 1 2.4783 -3.6034 0.0007 35 1 5.2549 -4.1576 -1.6908 36 1 5.9132 -5.6776 -1.0070 37 1 3.3714 -5.3083 -2.6988 38 1 4.7196 -6.4630 -2.9634 39 1 2.5209 -7.3485 -1.6975 40 1 4.1227 -7.7676 -1.0113 41 1 2.7311 -6.6900 2.0543 42 1 3.4060 -7.9974 1.0415 43 1 4.0035 -10.0514 2.5392 44 1 6.0417 -4.9326 1.0195 45 1 4.6589 -4.4595 2.0477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098731466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:12 Heat of formation + Delta-G solvation = 4.907808 kcal Electronic energy + Delta-G solvation = -26817.206006 eV Core-core repulsion = 23220.103334 eV Total energy + Delta-G solvation = -3597.102672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94165 -40.99450 -39.30930 -36.23400 -34.88793 -33.96245 -33.52909 -33.18239 -31.03835 -29.56260 -28.59957 -26.57222 -26.34235 -25.34953 -23.23338 -22.55632 -22.25794 -21.00885 -20.32127 -19.19643 -18.58803 -17.54829 -17.17720 -16.77318 -16.59976 -16.36811 -15.93886 -15.59114 -15.38427 -15.14980 -14.99733 -14.80474 -14.62436 -14.41059 -14.02105 -13.63654 -13.24476 -13.10860 -13.07183 -12.86494 -12.83696 -12.77834 -12.21781 -12.12637 -12.03455 -11.90357 -11.75005 -11.70164 -11.62528 -11.45411 -11.20857 -10.92278 -10.76662 -10.49974 -10.16620 -9.91564 -8.93898 -7.76486 -5.24651 -0.36071 0.24146 1.45844 1.46732 1.57349 1.70458 2.00941 2.48086 2.83126 3.02777 3.29688 3.41738 3.62203 3.73458 3.80286 3.86345 3.89941 4.03273 4.10172 4.35863 4.37658 4.44076 4.49699 4.57802 4.62044 4.67738 4.76492 4.78418 4.85663 4.86854 4.91407 5.00627 5.07187 5.12403 5.14130 5.19450 5.23387 5.25260 5.39706 5.45328 5.56876 5.66014 5.68652 5.79686 6.35008 6.44434 6.83094 7.08591 7.16671 7.71690 8.39920 9.22397 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.003415 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.992762 B = 8197.751924 C = 8438.847235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.111 3.889 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.131 4.131 6 C 0.061 3.939 7 C 0.563 3.437 8 O -0.562 6.562 9 N -0.682 5.682 10 C 0.167 3.833 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.103 4.103 14 C -0.103 4.103 15 H 0.098 0.902 16 C 0.146 3.854 17 N -0.613 5.613 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.060 4.060 21 N -0.942 5.942 22 Si 0.981 3.019 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.142 3.858 27 N -0.481 5.481 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.141 0.859 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.045 0.955 41 H -0.022 1.022 42 H 0.106 0.894 43 H 0.250 0.750 44 H 0.036 0.964 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 21.293 -9.814 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.098 4.098 5 C -0.153 4.153 6 C -0.076 4.076 7 C 0.349 3.651 8 O -0.441 6.441 9 N -0.333 5.333 10 C 0.080 3.920 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.141 4.141 14 C -0.123 4.123 15 H 0.117 0.883 16 C 0.021 3.979 17 N -0.338 5.338 18 C -0.368 4.368 19 H 0.091 0.909 20 C -0.253 4.253 21 N -0.592 5.592 22 Si 0.809 3.191 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.015 3.985 27 N -0.194 5.194 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.198 0.802 32 H 0.195 0.805 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.064 0.936 41 H -0.004 1.004 42 H 0.124 0.876 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -8.827 20.210 -9.707 24.095 hybrid contribution 0.983 -0.090 1.020 1.419 sum -7.845 20.120 -8.686 23.277 Atomic orbital electron populations 1.20839 0.86124 1.04627 1.04297 1.22002 0.98719 0.87922 0.94355 1.22661 0.94905 1.00316 0.97903 1.22035 0.95043 0.98211 0.94552 1.22251 1.02288 0.92531 0.98203 1.20911 0.90432 0.93363 1.02918 1.18370 0.86475 0.84189 0.76074 1.90759 1.14346 1.87540 1.51448 1.45786 1.10822 1.04038 1.72625 1.21592 0.93033 0.82163 0.95257 1.22559 0.97584 0.99961 0.94579 1.22550 0.98425 0.97050 0.96672 1.22354 1.00799 0.97176 0.93785 1.22925 0.97994 0.93981 0.97365 0.88344 1.21823 0.83618 1.01682 0.90815 1.45038 1.12861 1.07804 1.68107 1.19438 0.94502 0.92938 1.29887 0.90908 1.25557 0.99117 0.98058 1.02528 1.69834 1.21055 1.15087 1.53183 0.84970 0.78161 0.78453 0.77473 1.19768 1.21666 1.21250 1.21816 0.97255 0.85964 0.93432 1.67335 1.08093 1.31996 1.11965 0.89001 0.91202 0.87849 0.80199 0.80515 0.84081 0.74731 0.91686 0.92942 0.89871 0.90478 0.89529 0.93563 1.00359 0.87611 0.93999 0.94541 0.98379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.17 71.23 0.72 -0.35 16 2 C 0.11 1.93 6.78 42.69 0.29 2.22 16 3 C -0.14 -1.69 9.75 22.44 0.22 -1.47 16 4 C -0.07 -1.04 10.17 22.45 0.23 -0.82 16 5 C -0.13 -3.02 9.63 22.61 0.22 -2.80 16 6 C 0.06 1.72 6.75 41.89 0.28 2.00 16 7 C 0.56 19.73 7.10 86.88 0.62 20.35 16 8 O -0.56 -23.01 14.24 -3.78 -0.05 -23.07 16 9 N -0.68 -23.31 5.18 -419.34 -2.17 -25.48 16 10 C 0.17 6.57 0.93 4.96 0.00 6.58 16 11 C -0.11 -4.03 5.50 31.75 0.17 -3.85 16 12 C -0.11 -3.32 6.92 32.00 0.22 -3.10 16 13 C -0.10 -3.60 6.25 31.75 0.20 -3.40 16 14 C -0.10 -3.98 3.63 -9.44 -0.03 -4.01 16 15 H 0.10 3.25 7.71 -2.39 -0.02 3.24 16 16 C 0.15 7.43 5.61 86.50 0.49 7.92 16 17 N -0.61 -33.98 3.42 -691.57 -2.37 -36.34 16 18 C -0.24 -14.18 10.33 84.03 0.87 -13.32 16 19 H 0.07 4.27 7.83 -2.91 -0.02 4.24 16 20 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 21 N -0.94 -56.17 10.08 21.65 0.22 -55.95 16 22 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 C 0.14 6.98 5.36 86.22 0.46 7.44 16 27 N -0.48 -11.97 9.45 -173.08 -1.64 -13.60 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.52 8.08 -2.38 -0.02 0.50 16 31 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 34 H 0.41 12.52 7.62 -92.71 -0.71 11.82 16 35 H 0.06 2.39 6.64 -2.39 -0.02 2.38 16 36 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.05 1.94 7.61 -2.39 -0.02 1.92 16 41 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.11 5.95 4.93 -2.39 -0.01 5.94 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.04 1.88 7.52 -2.38 -0.02 1.86 16 45 H 0.00 -0.08 8.05 -2.39 -0.02 -0.10 16 Total: -1.00 -74.65 358.10 1.74 -72.91 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.30 Total: 22.18 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.42 Total: 10.37 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.96 Total: -131.38 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.65 1.74 -72.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098731466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.819 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds