Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38628 * 120.47076 * 2 1 4 4 C 1.38591 * 118.48561 * 180.26738 * 3 2 1 5 5 C 1.38603 * 119.35106 * 359.75313 * 4 3 2 6 6 N 1.31492 * 120.90087 * 0.02562 * 5 4 3 7 7 C 1.32740 * 121.64472 * 359.97438 * 6 5 4 8 8 C 1.48175 * 119.72326 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99704 * 174.49337 * 8 7 6 10 10 N 1.34770 * 120.00047 * 354.49404 * 8 7 6 11 11 C 1.46502 * 120.00084 * 180.02562 * 10 8 7 12 12 C 1.54322 * 111.68972 * 298.98288 * 11 10 8 13 13 C 1.55053 * 103.93941 * 262.79879 * 12 11 10 14 14 C 1.55060 * 102.10638 * 319.94190 * 13 12 11 15 15 C 1.54322 * 103.93595 * 40.05850 * 14 13 12 16 16 H 1.08993 * 112.35986 * 97.61285 * 15 14 13 17 17 C 1.55742 * 109.23686 * 223.04077 * 15 14 13 18 18 N 1.47216 * 106.67541 * 95.05474 * 17 15 14 19 19 C 1.36933 * 126.69897 * 210.98105 * 18 17 15 20 20 H 1.08006 * 119.99486 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00559 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99631 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00402 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47032 * 90.00024 * 23 21 19 25 25 H 1.48504 * 109.47122 * 209.99826 * 23 21 19 26 26 H 1.48499 * 109.47332 * 330.00038 * 23 21 19 27 27 C 1.47212 * 106.59497 * 30.98987 * 18 17 15 28 28 H 1.08992 * 109.47275 * 263.48692 * 1 2 3 29 29 H 1.09005 * 109.46409 * 23.49068 * 1 2 3 30 30 H 1.09002 * 109.47467 * 143.48163 * 1 2 3 31 31 H 1.07999 * 120.75993 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.32476 * 179.77080 * 4 3 2 33 33 H 1.08002 * 119.54678 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99989 * 359.97438 * 10 8 7 35 35 H 1.08999 * 110.53770 * 144.17647 * 12 11 10 36 36 H 1.09004 * 110.53312 * 21.40619 * 12 11 10 37 37 H 1.08998 * 110.90869 * 78.14094 * 13 12 11 38 38 H 1.08998 * 110.90703 * 201.74343 * 13 12 11 39 39 H 1.08993 * 110.53424 * 158.67416 * 14 13 12 40 40 H 1.09005 * 110.53044 * 281.44603 * 14 13 12 41 41 H 1.08989 * 110.17501 * 335.59444 * 17 15 14 42 42 H 1.09001 * 109.73046 * 214.26578 * 17 15 14 43 43 H 0.96997 * 120.00139 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.07191 * 209.49243 * 27 18 17 45 45 H 1.08995 * 110.07970 * 87.95033 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1468 -0.0057 5 6 4.2322 -0.0841 -0.0060 6 7 3.5406 -1.2024 -0.0014 7 6 2.2132 -1.2004 0.0041 8 6 1.4766 -2.4861 0.0085 9 8 0.2661 -2.4923 0.1145 10 7 2.1491 -3.6484 -0.1050 11 6 1.4208 -4.9195 -0.1012 12 6 0.6465 -5.1293 1.2171 13 6 1.5862 -6.0264 2.0635 14 6 2.1354 -7.0145 1.0022 15 6 2.3769 -6.1301 -0.2392 16 1 3.4168 -5.8161 -0.3287 17 6 1.8720 -6.8784 -1.5084 18 7 0.4999 -6.4074 -1.7586 19 6 -0.5206 -7.1235 -2.3251 20 1 -1.4909 -6.6681 -2.4580 21 6 -0.3084 -8.4349 -2.7276 22 7 0.8740 -8.9899 -2.5652 23 14 -1.7007 -9.4119 -3.4998 24 1 -1.6835 -9.2192 -4.9721 25 1 -1.5267 -10.8532 -3.1871 26 1 -2.9986 -8.9401 -2.9539 27 6 0.4392 -5.0162 -1.2810 28 1 -0.3633 -0.1166 1.0209 29 1 -0.3632 0.9426 -0.4097 30 1 -0.3634 -0.8259 -0.6115 31 1 1.6902 2.1415 0.0004 32 1 4.1723 2.0596 -0.0096 33 1 5.3114 -0.1252 -0.0100 34 1 3.1154 -3.6434 -0.1900 35 1 -0.2993 -5.6371 1.0285 36 1 0.4765 -4.1754 1.7166 37 1 2.3929 -5.4394 2.5026 38 1 1.0275 -6.5557 2.8353 39 1 3.0704 -7.4598 1.3421 40 1 1.3995 -7.7882 0.7832 41 1 1.8725 -7.9545 -1.3354 42 1 2.5114 -6.6359 -2.3572 43 1 1.0225 -9.9061 -2.8468 44 1 -0.5710 -4.7789 -0.9476 45 1 0.7412 -4.3342 -2.0758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098773609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = 29.913484 kcal Electronic energy + Delta-G solvation = -27103.693152 eV Core-core repulsion = 23507.674807 eV Total energy + Delta-G solvation = -3596.018344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87795 -39.66989 -37.85192 -34.48662 -33.99326 -33.00389 -32.14336 -31.33368 -29.28600 -28.05067 -27.17768 -24.90581 -24.57375 -24.05660 -22.38241 -21.30606 -20.50415 -19.67919 -18.74548 -17.73509 -16.96391 -16.67774 -15.78856 -15.47642 -15.14498 -14.95128 -14.61198 -14.27278 -13.76217 -13.59039 -13.44639 -13.38190 -13.28494 -13.01081 -12.78672 -12.62588 -12.29052 -12.07993 -11.77334 -11.24567 -11.00098 -10.88198 -10.60084 -10.52023 -10.24842 -10.16355 -10.05952 -9.99576 -9.97320 -9.87622 -9.82926 -9.62215 -9.21734 -9.15717 -8.68692 -8.50901 -6.81857 -5.60958 -3.05208 0.54451 1.00706 2.85305 3.31364 3.42743 3.47858 3.49721 3.78585 4.10133 4.51267 4.54351 4.65823 4.72453 4.78199 4.98960 5.18762 5.21314 5.38774 5.42558 5.52004 5.55862 5.71597 5.71726 5.80679 5.90596 5.93843 6.00345 6.07752 6.17939 6.18871 6.20147 6.30400 6.40462 6.43403 6.54083 6.63727 6.68748 6.83263 6.88229 7.01707 7.18383 7.47472 7.54488 7.65730 7.85762 7.92905 8.42279 8.50206 9.24993 9.85173 10.52896 11.40322 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003638 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.575538 B = 7694.355211 C = 8165.490045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.151 4.151 5 C 0.088 3.912 6 N -0.455 5.455 7 C 0.078 3.922 8 C 0.566 3.434 9 O -0.522 6.522 10 N -0.688 5.688 11 C 0.156 3.844 12 C -0.111 4.111 13 C -0.125 4.125 14 C -0.107 4.107 15 C -0.117 4.117 16 H 0.072 0.928 17 C 0.142 3.858 18 N -0.593 5.593 19 C -0.214 4.214 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.142 3.858 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.161 0.839 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.003 0.997 43 H 0.252 0.748 44 H 0.052 0.948 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 17.910 8.320 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.115 4.115 4 C -0.171 4.171 5 C -0.072 4.072 6 N -0.166 5.166 7 C -0.060 4.060 8 C 0.350 3.650 9 O -0.399 6.399 10 N -0.338 5.338 11 C 0.069 3.931 12 C -0.150 4.150 13 C -0.163 4.163 14 C -0.145 4.145 15 C -0.137 4.137 16 H 0.090 0.910 17 C 0.016 3.984 18 N -0.316 5.316 19 C -0.342 4.342 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.147 0.853 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.359 16.807 8.282 19.786 hybrid contribution -0.300 0.655 -0.531 0.895 sum 6.059 17.462 7.751 20.042 Atomic orbital electron populations 1.21078 0.88863 1.03447 1.04071 1.20990 0.98573 0.92355 0.95757 1.21552 0.94162 0.98093 0.97669 1.22341 0.95286 0.99777 0.99697 1.22761 1.00424 0.87374 0.96680 1.67558 1.07253 1.31922 1.09848 1.21216 0.89749 0.94045 1.01024 1.17805 0.86744 0.82933 0.77495 1.90734 1.12889 1.86498 1.49776 1.45955 1.10992 1.04959 1.71875 1.21933 0.92929 0.81427 0.96802 1.22648 0.98619 0.99343 0.94352 1.22603 0.98515 0.97633 0.97534 1.22406 1.00641 0.97743 0.93674 1.23383 0.96943 0.94092 0.99289 0.91003 1.22375 0.84082 1.02270 0.89687 1.44429 1.08761 1.07917 1.70531 1.19107 0.90312 0.93610 1.31192 0.90345 1.24754 0.97133 0.97029 1.01834 1.69589 1.20590 1.13798 1.53158 0.86047 0.81074 0.79310 0.78954 1.21712 1.21670 1.20682 1.21532 0.96798 0.88015 0.92269 0.90355 0.92409 0.87846 0.84304 0.84427 0.82212 0.75910 0.90279 0.91821 0.92522 0.92155 0.92553 0.90117 0.85341 0.97894 0.93695 0.92933 0.96930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.74 36.01 0.31 -1.06 16 2 C -0.07 -0.89 5.93 -104.09 -0.62 -1.51 16 3 C -0.09 -0.80 9.83 -39.31 -0.39 -1.19 16 4 C -0.15 -1.20 10.11 -39.32 -0.40 -1.60 16 5 C 0.09 0.83 11.18 -17.56 -0.20 0.64 16 6 N -0.45 -5.85 9.56 -9.80 -0.09 -5.94 16 7 C 0.08 1.10 6.75 -83.01 -0.56 0.54 16 8 C 0.57 9.40 7.04 -12.18 -0.09 9.32 16 9 O -0.52 -9.60 11.20 5.36 0.06 -9.54 16 10 N -0.69 -11.46 5.18 -46.51 -0.24 -11.70 16 11 C 0.16 2.95 0.93 -129.73 -0.12 2.83 16 12 C -0.11 -2.02 5.50 -24.95 -0.14 -2.16 16 13 C -0.13 -2.00 6.92 -24.56 -0.17 -2.17 16 14 C -0.11 -1.90 6.27 -24.95 -0.16 -2.05 16 15 C -0.12 -2.24 3.79 -87.47 -0.33 -2.57 16 16 H 0.07 1.23 7.71 -51.93 -0.40 0.83 16 17 C 0.14 3.44 5.62 -2.19 -0.01 3.43 16 18 N -0.59 -15.45 3.39 -169.90 -0.58 -16.03 16 19 C -0.21 -6.03 10.34 -15.06 -0.16 -6.18 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -26.56 10.08 55.49 0.56 -26.00 16 23 Si 0.92 22.21 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.14 3.23 5.23 -3.25 -0.02 3.21 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 30 H 0.10 1.48 5.85 -51.93 -0.30 1.18 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.41 6.15 7.64 -40.82 -0.31 5.84 16 35 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 36 H 0.06 1.14 6.64 -51.93 -0.34 0.80 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 41 H 0.13 3.45 4.93 -51.94 -0.26 3.19 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.05 1.24 7.52 -51.93 -0.39 0.85 16 45 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -31.22 352.52 -9.69 -40.90 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.56 Total: 6.76 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.12 Total: -0.96 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.35 Total: -59.66 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.22 -9.69 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098773609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.817 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds