Wall clock time and date at job start Tue Mar 31 2020 11:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38628 * 120.47076 * 2 1 4 4 C 1.38591 * 118.48561 * 180.26738 * 3 2 1 5 5 C 1.38603 * 119.35106 * 359.75313 * 4 3 2 6 6 N 1.31492 * 120.90087 * 0.02562 * 5 4 3 7 7 C 1.32740 * 121.64472 * 359.97438 * 6 5 4 8 8 C 1.48175 * 119.72326 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99704 * 174.49337 * 8 7 6 10 10 N 1.34770 * 120.00047 * 354.49404 * 8 7 6 11 11 C 1.46502 * 120.00084 * 180.02562 * 10 8 7 12 12 C 1.54322 * 111.68972 * 298.98288 * 11 10 8 13 13 C 1.55053 * 103.93941 * 262.79879 * 12 11 10 14 14 C 1.55060 * 102.10638 * 319.94190 * 13 12 11 15 15 C 1.54322 * 103.93595 * 40.05850 * 14 13 12 16 16 H 1.08993 * 112.35986 * 97.61285 * 15 14 13 17 17 C 1.55742 * 109.23686 * 223.04077 * 15 14 13 18 18 N 1.47216 * 106.67541 * 95.05474 * 17 15 14 19 19 C 1.36933 * 126.69897 * 210.98105 * 18 17 15 20 20 H 1.08006 * 119.99486 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00559 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99631 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00402 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47032 * 90.00024 * 23 21 19 25 25 H 1.48504 * 109.47122 * 209.99826 * 23 21 19 26 26 H 1.48499 * 109.47332 * 330.00038 * 23 21 19 27 27 C 1.47212 * 106.59497 * 30.98987 * 18 17 15 28 28 H 1.08992 * 109.47275 * 263.48692 * 1 2 3 29 29 H 1.09005 * 109.46409 * 23.49068 * 1 2 3 30 30 H 1.09002 * 109.47467 * 143.48163 * 1 2 3 31 31 H 1.07999 * 120.75993 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.32476 * 179.77080 * 4 3 2 33 33 H 1.08002 * 119.54678 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99989 * 359.97438 * 10 8 7 35 35 H 1.08999 * 110.53770 * 144.17647 * 12 11 10 36 36 H 1.09004 * 110.53312 * 21.40619 * 12 11 10 37 37 H 1.08998 * 110.90869 * 78.14094 * 13 12 11 38 38 H 1.08998 * 110.90703 * 201.74343 * 13 12 11 39 39 H 1.08993 * 110.53424 * 158.67416 * 14 13 12 40 40 H 1.09005 * 110.53044 * 281.44603 * 14 13 12 41 41 H 1.08989 * 110.17501 * 335.59444 * 17 15 14 42 42 H 1.09001 * 109.73046 * 214.26578 * 17 15 14 43 43 H 0.96997 * 120.00139 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.07191 * 209.49243 * 27 18 17 45 45 H 1.08995 * 110.07970 * 87.95033 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1468 -0.0057 5 6 4.2322 -0.0841 -0.0060 6 7 3.5406 -1.2024 -0.0014 7 6 2.2132 -1.2004 0.0041 8 6 1.4766 -2.4861 0.0085 9 8 0.2661 -2.4923 0.1145 10 7 2.1491 -3.6484 -0.1050 11 6 1.4208 -4.9195 -0.1012 12 6 0.6465 -5.1293 1.2171 13 6 1.5862 -6.0264 2.0635 14 6 2.1354 -7.0145 1.0022 15 6 2.3769 -6.1301 -0.2392 16 1 3.4168 -5.8161 -0.3287 17 6 1.8720 -6.8784 -1.5084 18 7 0.4999 -6.4074 -1.7586 19 6 -0.5206 -7.1235 -2.3251 20 1 -1.4909 -6.6681 -2.4580 21 6 -0.3084 -8.4349 -2.7276 22 7 0.8740 -8.9899 -2.5652 23 14 -1.7007 -9.4119 -3.4998 24 1 -1.6835 -9.2192 -4.9721 25 1 -1.5267 -10.8532 -3.1871 26 1 -2.9986 -8.9401 -2.9539 27 6 0.4392 -5.0162 -1.2810 28 1 -0.3633 -0.1166 1.0209 29 1 -0.3632 0.9426 -0.4097 30 1 -0.3634 -0.8259 -0.6115 31 1 1.6902 2.1415 0.0004 32 1 4.1723 2.0596 -0.0096 33 1 5.3114 -0.1252 -0.0100 34 1 3.1154 -3.6434 -0.1900 35 1 -0.2993 -5.6371 1.0285 36 1 0.4765 -4.1754 1.7166 37 1 2.3929 -5.4394 2.5026 38 1 1.0275 -6.5557 2.8353 39 1 3.0704 -7.4598 1.3421 40 1 1.3995 -7.7882 0.7832 41 1 1.8725 -7.9545 -1.3354 42 1 2.5114 -6.6359 -2.3572 43 1 1.0225 -9.9061 -2.8468 44 1 -0.5710 -4.7789 -0.9476 45 1 0.7412 -4.3342 -2.0758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098773609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:28 Heat of formation + Delta-G solvation = 10.050179 kcal Electronic energy + Delta-G solvation = -27104.554489 eV Core-core repulsion = 23507.674807 eV Total energy + Delta-G solvation = -3596.879682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98440 -40.94456 -39.22055 -36.29348 -35.14656 -34.13255 -33.43927 -32.90646 -30.93820 -29.60507 -28.29078 -26.45024 -26.31330 -25.32863 -23.26291 -22.62410 -22.26756 -21.05819 -20.27634 -19.19960 -18.59566 -17.65821 -17.14380 -16.73317 -16.38709 -16.31058 -16.05565 -15.60072 -15.39337 -15.08121 -14.94548 -14.66524 -14.55824 -14.30334 -14.01904 -13.70549 -13.61327 -13.26767 -13.06641 -12.90648 -12.82952 -12.74412 -12.18270 -12.09697 -12.04353 -11.81240 -11.74492 -11.68572 -11.57037 -11.43530 -10.97193 -10.76322 -10.74996 -10.34125 -10.16465 -9.84727 -8.93159 -7.76719 -5.25250 -0.31396 0.26806 1.45918 1.47730 1.56819 1.76917 2.06531 2.48535 2.87277 3.16999 3.29468 3.44248 3.68038 3.77308 3.82924 3.86550 3.89180 4.00333 4.07316 4.38242 4.39764 4.46492 4.53204 4.57655 4.59298 4.67420 4.77051 4.79002 4.79467 4.89697 4.94204 5.01566 5.08443 5.11366 5.18815 5.20360 5.26771 5.37467 5.41016 5.45379 5.59398 5.69897 5.72413 5.81431 6.35836 6.49032 6.85606 7.08726 7.22628 7.73135 8.41031 9.22074 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003638 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.575538 B = 7694.355211 C = 8165.490045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.086 4.086 4 C -0.130 4.130 5 C 0.081 3.919 6 N -0.477 5.477 7 C 0.045 3.955 8 C 0.560 3.440 9 O -0.550 6.550 10 N -0.685 5.685 11 C 0.168 3.832 12 C -0.107 4.107 13 C -0.110 4.110 14 C -0.102 4.102 15 C -0.105 4.105 16 H 0.100 0.900 17 C 0.143 3.857 18 N -0.611 5.611 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.982 3.018 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.273 1.273 27 C 0.146 3.854 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.192 0.808 34 H 0.413 0.587 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.106 0.894 42 H -0.023 1.023 43 H 0.250 0.750 44 H 0.034 0.966 45 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 20.361 9.618 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.080 4.080 6 N -0.188 5.188 7 C -0.091 4.091 8 C 0.347 3.653 9 O -0.428 6.428 10 N -0.336 5.336 11 C 0.081 3.919 12 C -0.145 4.145 13 C -0.147 4.147 14 C -0.140 4.140 15 C -0.125 4.125 16 H 0.118 0.882 17 C 0.018 3.982 18 N -0.335 5.335 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.252 4.252 22 N -0.591 5.591 23 Si 0.810 3.190 24 H -0.214 1.214 25 H -0.213 1.213 26 H -0.198 1.198 27 C 0.019 3.981 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.190 0.810 32 H 0.199 0.801 33 H 0.209 0.791 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.123 0.877 42 H -0.005 1.005 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 8.159 19.281 9.592 23.029 hybrid contribution -0.802 0.044 -1.008 1.289 sum 7.357 19.325 8.583 22.389 Atomic orbital electron populations 1.20958 0.89307 1.03436 1.03235 1.21139 0.98572 0.93031 0.96329 1.21959 0.94902 0.98007 0.96312 1.22840 0.95017 1.00801 0.96308 1.23439 1.01869 0.87185 0.95471 1.67481 1.06620 1.33941 1.10769 1.20835 0.90617 0.93027 1.04667 1.18345 0.86686 0.83844 0.76414 1.90723 1.14195 1.87102 1.50789 1.45800 1.11213 1.04197 1.72397 1.21575 0.92266 0.82765 0.95307 1.22540 0.97937 0.99690 0.94379 1.22551 0.98588 0.96734 0.96869 1.22320 1.01197 0.97044 0.93441 1.23294 0.98144 0.93738 0.97341 0.88212 1.22231 0.83150 1.01622 0.91205 1.44648 1.09096 1.09033 1.70728 1.19388 0.90893 0.94445 1.32165 0.90829 1.25564 0.99585 0.97730 1.02292 1.69826 1.22076 1.13773 1.53437 0.85034 0.78515 0.77635 0.77853 1.21437 1.21289 1.19797 1.21527 0.97132 0.86221 0.93229 0.90855 0.89653 0.91299 0.81021 0.80075 0.79080 0.74907 0.93054 0.91645 0.89942 0.90585 0.89616 0.93532 0.87687 1.00498 0.93968 0.94735 0.98749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 8.74 71.24 0.62 -2.00 16 2 C -0.09 -2.01 5.93 -19.52 -0.12 -2.13 16 3 C -0.09 -1.24 9.83 22.45 0.22 -1.02 16 4 C -0.13 -1.45 10.11 22.44 0.23 -1.22 16 5 C 0.08 1.25 11.18 84.83 0.95 2.20 16 6 N -0.48 -11.48 9.56 -184.90 -1.77 -13.25 16 7 C 0.04 1.26 6.75 41.90 0.28 1.54 16 8 C 0.56 19.20 7.04 86.88 0.61 19.81 16 9 O -0.55 -21.36 11.20 -3.75 -0.04 -21.41 16 10 N -0.69 -23.14 5.18 -419.36 -2.17 -25.31 16 11 C 0.17 6.56 0.93 4.95 0.00 6.57 16 12 C -0.11 -3.95 5.50 31.75 0.17 -3.77 16 13 C -0.11 -3.34 6.92 32.00 0.22 -3.12 16 14 C -0.10 -3.56 6.27 31.75 0.20 -3.36 16 15 C -0.11 -4.05 3.79 -8.76 -0.03 -4.09 16 16 H 0.10 3.30 7.71 -2.39 -0.02 3.28 16 17 C 0.14 7.30 5.62 87.19 0.49 7.79 16 18 N -0.61 -33.69 3.39 -691.45 -2.35 -36.04 16 19 C -0.24 -14.20 10.34 84.03 0.87 -13.33 16 20 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 22 N -0.94 -56.07 10.08 21.65 0.22 -55.85 16 23 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 27 C 0.15 7.11 5.23 86.50 0.45 7.56 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.43 8.06 -2.38 -0.02 1.41 16 30 H 0.07 2.10 5.85 -2.39 -0.01 2.09 16 31 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.41 12.39 7.64 -92.71 -0.71 11.68 16 35 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 36 H 0.06 2.39 6.64 -2.38 -0.02 2.37 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.05 1.95 7.57 -2.38 -0.02 1.93 16 41 H 0.11 5.91 4.93 -2.39 -0.01 5.90 16 42 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.03 1.76 7.52 -2.39 -0.02 1.74 16 45 H -0.01 -0.27 8.06 -2.39 -0.02 -0.29 16 Total: -1.00 -73.28 352.52 1.86 -71.42 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.30 Total: 23.17 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.64 Total: 8.49 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -6.07 Total: -130.44 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.04 Total: -21.41 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -73.28 1.86 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098773609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.472 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds