Wall clock time and date at job start Tue Mar 31 2020 11:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39871 * 125.89982 * 2 1 4 4 C 1.35315 * 107.92429 * 180.14137 * 3 2 1 5 5 C 1.50702 * 126.13188 * 179.90347 * 4 3 2 6 6 N 1.46900 * 109.46758 * 94.69097 * 5 4 3 7 7 C 1.46894 * 111.00412 * 293.95552 * 6 5 4 8 8 C 1.46905 * 110.99729 * 170.00393 * 6 5 4 9 9 C 1.50694 * 109.46898 * 190.00185 * 8 6 5 10 10 C 1.38300 * 119.93172 * 269.72529 * 9 8 6 11 11 C 1.38102 * 120.07354 * 179.73023 * 10 9 8 12 12 C 1.38880 * 119.92541 * 0.56710 * 11 10 9 13 13 O 1.35753 * 120.06843 * 179.68953 * 12 11 10 14 14 C 1.34834 * 116.99846 * 174.48650 * 13 12 11 15 15 H 1.07994 * 120.00224 * 5.05228 * 14 13 12 16 16 C 1.38656 * 119.99570 * 185.05239 * 14 13 12 17 17 N 1.31555 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99763 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47170 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46996 * 120.00224 * 18 16 14 21 21 H 1.48500 * 109.46764 * 240.00086 * 18 16 14 22 22 C 1.38877 * 119.86600 * 359.70235 * 12 11 10 23 23 C 1.38111 * 119.92762 * 0.02562 * 22 12 11 24 24 N 1.34956 * 107.74356 * 359.64231 * 4 3 2 25 25 C 1.46497 * 126.04038 * 180.20150 * 24 4 3 26 26 N 1.30836 * 125.89817 * 179.74317 * 2 1 3 27 27 H 1.09003 * 109.46689 * 270.23073 * 1 2 3 28 28 H 1.08991 * 109.46938 * 30.23399 * 1 2 3 29 29 H 1.08995 * 109.46927 * 150.23414 * 1 2 3 30 30 H 1.08001 * 126.03873 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46866 * 334.69718 * 5 4 3 32 32 H 1.08991 * 109.47305 * 214.69155 * 5 4 3 33 33 H 1.09004 * 109.47121 * 59.99836 * 7 6 5 34 34 H 1.08992 * 109.47978 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47067 * 300.00679 * 7 6 5 36 36 H 1.09001 * 109.46503 * 309.99686 * 8 6 5 37 37 H 1.09000 * 109.47071 * 69.99878 * 8 6 5 38 38 H 1.08003 * 119.96373 * 359.97438 * 10 9 8 39 39 H 1.07997 * 120.03900 * 180.27326 * 11 10 9 40 40 H 0.97004 * 119.99857 * 180.02562 * 17 16 14 41 41 H 1.07992 * 120.03936 * 179.97438 * 22 12 11 42 42 H 1.07998 * 119.96098 * 179.97438 * 23 22 12 43 43 H 1.08999 * 109.46888 * 89.99813 * 25 24 4 44 44 H 1.08988 * 109.47363 * 210.00489 * 25 24 4 45 45 H 1.09004 * 109.46832 * 330.00308 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7154 -0.0032 5 6 4.8351 1.5989 -0.0064 6 7 5.3016 1.7944 1.3728 7 6 4.3209 2.5563 2.1573 8 6 6.6168 2.4486 1.3959 9 6 7.1715 2.4117 2.7965 10 6 6.9037 3.4480 3.6724 11 6 7.4059 3.4145 4.9584 12 6 8.1906 2.3444 5.3681 13 8 8.6911 2.3116 6.6296 14 6 9.3477 1.1932 6.9987 15 1 9.5269 0.4094 6.2778 16 6 9.7926 1.0496 8.3041 17 7 9.5738 2.0042 9.1824 18 14 10.7017 -0.5000 8.8157 19 1 10.8165 -1.4139 7.6509 20 1 12.0589 -0.1408 9.2994 21 1 9.9516 -1.1774 9.9037 22 6 8.4625 1.3080 4.4845 23 6 7.9526 1.3446 3.2015 24 7 3.6088 -0.6341 0.0029 25 6 4.7899 -1.5008 0.0063 26 7 2.2742 -1.0598 0.0048 27 1 -0.3633 0.0041 1.0277 28 1 -0.3633 0.8878 -0.5174 29 1 -0.3633 -0.8920 -0.5102 30 1 1.9923 2.1598 0.0004 31 1 4.5836 2.5645 -0.4451 32 1 5.6233 1.1274 -0.5931 33 1 3.3753 2.0146 2.1817 34 1 4.6914 2.6871 3.1740 35 1 4.1682 3.5331 1.6982 36 1 7.2950 1.9245 0.7225 37 1 6.5130 3.4846 1.0733 38 1 6.2977 4.2824 3.3515 39 1 7.1927 4.2219 5.6432 40 1 9.8854 1.9039 10.0955 41 1 9.0727 0.4747 4.8000 42 1 8.1640 0.5392 2.5139 43 1 5.0833 -1.7111 1.0348 44 1 4.5562 -2.4355 -0.5032 45 1 5.6092 -1.0005 -0.5101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137119360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:09 Heat of formation + Delta-G solvation = 81.720460 kcal Electronic energy + Delta-G solvation = -25359.868949 eV Core-core repulsion = 21766.097124 eV Total energy + Delta-G solvation = -3593.771825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38790 -39.20837 -37.75542 -36.03601 -34.01919 -32.38529 -31.43624 -30.25941 -29.76163 -29.34158 -27.43592 -26.13660 -25.43238 -25.00692 -22.45140 -21.88558 -20.47232 -20.27195 -19.30075 -18.00484 -17.00206 -16.66610 -16.12355 -15.41213 -15.13739 -15.01965 -14.54968 -14.46520 -14.03561 -13.88642 -13.64842 -13.58835 -13.47331 -13.25376 -13.00387 -12.73129 -12.63905 -12.44530 -12.30554 -12.21816 -11.78234 -11.74908 -11.59754 -11.44949 -11.23379 -10.78669 -10.70442 -10.60988 -10.57641 -10.43269 -9.34451 -9.20518 -8.85449 -8.58893 -8.34936 -8.17402 -7.19666 -6.46838 -4.05498 1.73247 2.19822 2.26966 2.44568 2.67087 3.10914 3.12860 3.18259 3.95035 4.01538 4.40011 4.44198 4.60634 4.81265 4.95085 5.06464 5.08022 5.12038 5.18617 5.24805 5.27649 5.34892 5.40850 5.44485 5.50910 5.57257 5.60836 5.69563 5.71141 5.74271 5.80459 5.85227 6.08688 6.14456 6.19370 6.39929 6.60569 6.67423 6.85995 6.88936 6.96525 7.01587 7.08095 7.24185 7.38522 7.43032 7.68201 7.80835 7.98448 8.99056 9.69040 10.71249 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002580 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.321303 B =10849.461547 C =11368.395048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.271 4.271 4 C 0.104 3.896 5 C 0.112 3.888 6 N -0.532 5.532 7 C 0.021 3.979 8 C 0.114 3.886 9 C -0.180 4.180 10 C -0.067 4.067 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.235 4.235 23 C -0.049 4.049 24 N -0.360 5.360 25 C 0.105 3.895 26 N -0.300 5.300 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 -1.611 -19.574 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.301 4.301 4 C -0.025 4.025 5 C -0.017 4.017 6 N -0.256 5.256 7 C -0.127 4.127 8 C -0.012 4.012 9 C -0.182 4.182 10 C -0.086 4.086 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.081 6.081 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.255 4.255 23 C -0.068 4.068 24 N -0.141 5.141 25 C -0.037 4.037 26 N -0.123 5.123 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.735 -3.244 -18.920 21.993 hybrid contribution 0.468 0.805 0.003 0.932 sum -10.266 -2.438 -18.917 21.661 Atomic orbital electron populations 1.20143 0.86894 1.02979 1.02883 1.22248 0.96806 0.90831 0.99872 1.21067 0.90991 0.99577 1.18511 1.20874 0.96466 0.84567 1.00575 1.20652 0.92681 0.96787 0.91561 1.62052 1.03126 1.50703 1.09754 1.22490 0.95819 0.95071 0.99319 1.20820 0.88774 0.96394 0.95215 1.18995 1.05953 0.97720 0.95498 1.20480 0.98217 0.97178 0.92684 1.20176 1.04297 0.99925 0.96898 1.19397 0.91078 0.93252 0.86059 1.83979 1.61837 1.38791 1.23516 1.21376 1.34208 0.95219 0.95909 0.89007 1.25295 0.97641 0.99011 0.94603 1.70048 1.43483 1.32169 1.04027 0.85647 0.78814 0.79919 0.79058 1.19091 1.20137 1.20126 1.21153 1.07972 1.01737 0.94612 1.20530 0.95334 0.96002 0.94926 1.48332 1.05379 1.04242 1.56144 1.21822 0.83638 0.94265 1.03963 1.77297 0.86361 1.22736 1.25937 0.90625 0.90612 0.91162 0.83993 0.92252 0.89794 0.91445 0.90111 0.95844 0.90891 0.94629 0.87464 0.86626 0.92058 0.85641 0.87659 0.90167 0.89769 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 36.01 0.38 -0.20 16 2 C 0.07 0.81 7.22 -82.40 -0.59 0.22 16 3 C -0.27 -3.10 9.61 -40.01 -0.38 -3.48 16 4 C 0.10 1.21 5.68 -82.26 -0.47 0.74 16 5 C 0.11 1.12 5.14 -4.97 -0.03 1.09 16 6 N -0.53 -6.46 4.74 -245.83 -1.17 -7.63 16 7 C 0.02 0.26 8.98 60.06 0.54 0.80 16 8 C 0.11 1.41 5.12 -4.98 -0.03 1.39 16 9 C -0.18 -2.91 4.89 -104.58 -0.51 -3.42 16 10 C -0.07 -1.14 7.90 -39.61 -0.31 -1.45 16 11 C -0.19 -4.01 9.99 -39.39 -0.39 -4.41 16 12 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 13 O -0.18 -5.06 9.76 0.03 0.00 -5.06 16 14 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 18 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.24 -5.04 9.17 -39.39 -0.36 -5.40 16 23 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 24 N -0.36 -4.46 4.01 -63.89 -0.26 -4.72 16 25 C 0.10 0.96 11.27 59.85 0.67 1.64 16 26 N -0.30 -4.14 12.58 33.67 0.42 -3.72 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.08 0.71 7.03 -51.93 -0.37 0.34 16 33 H 0.07 0.86 6.53 -51.93 -0.34 0.52 16 34 H 0.08 1.16 5.90 -51.93 -0.31 0.85 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 37 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.11 1.54 8.00 -52.48 -0.42 1.12 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.67 8.14 -51.94 -0.42 0.25 16 45 H 0.08 0.61 7.15 -51.93 -0.37 0.24 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.68 373.20 -8.13 -40.81 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.56 Total: 3.63 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.93 Total: -19.90 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.24 Total: -40.57 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.68 -8.13 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137119360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.531 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds