Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 119.27680 * 2 1 4 4 C 1.38011 * 119.63037 * 180.02562 * 3 2 1 5 5 C 1.41000 * 118.27664 * 359.97438 * 4 3 2 6 6 C 1.41029 * 120.70382 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00241 * 207.16694 * 6 5 4 8 8 C 1.39949 * 119.99965 * 27.17067 * 6 5 4 9 9 N 1.30870 * 119.99615 * 12.93464 * 8 6 5 10 10 Si 1.86794 * 120.00280 * 192.93789 * 8 6 5 11 11 H 1.48497 * 109.47246 * 89.99773 * 10 8 6 12 12 H 1.48496 * 109.47048 * 210.00060 * 10 8 6 13 13 H 1.48505 * 109.46826 * 330.00022 * 10 8 6 14 14 C 1.41707 * 118.59339 * 0.02562 * 5 4 3 15 15 N 1.38085 * 119.90604 * 179.97438 * 14 5 4 16 16 C 1.46879 * 111.00000 * 195.13431 * 15 14 5 17 17 C 1.50258 * 110.10869 * 287.16680 * 16 15 14 18 18 O 1.21280 * 118.67518 * 162.27098 * 17 16 15 19 19 N 1.33821 * 122.64426 * 342.30109 * 17 16 15 20 20 C 1.45803 * 122.72598 * 1.73055 * 19 17 16 21 21 C 1.54077 * 109.82529 * 103.46911 * 20 19 17 22 22 C 1.54933 * 104.14643 * 95.81878 * 21 20 19 23 23 C 1.54903 * 102.77239 * 37.78180 * 22 21 20 24 24 C 1.53675 * 110.06190 * 220.77528 * 20 19 17 25 25 C 1.47228 * 111.00248 * 72.17385 * 15 14 5 26 26 N 1.31972 * 119.27708 * 180.26919 * 2 1 3 27 27 H 1.08991 * 109.47121 * 90.00360 * 1 2 3 28 28 H 1.09002 * 109.46962 * 210.00549 * 1 2 3 29 29 H 1.09000 * 109.47121 * 330.00102 * 1 2 3 30 30 H 1.08004 * 120.18553 * 0.03688 * 3 2 1 31 31 H 1.07997 * 120.86219 * 180.02562 * 4 3 2 32 32 H 0.96998 * 119.99981 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.36488 * 47.36614 * 16 15 14 34 34 H 1.09004 * 109.36915 * 166.97348 * 16 15 14 35 35 H 0.96994 * 118.63016 * 181.71146 * 19 17 16 36 36 H 1.08997 * 110.49553 * 214.48092 * 21 20 19 37 37 H 1.08995 * 110.49748 * 337.15208 * 21 20 19 38 38 H 1.08999 * 110.75257 * 279.46171 * 22 21 20 39 39 H 1.08997 * 110.91295 * 156.17472 * 22 21 20 40 40 H 1.08999 * 110.48782 * 203.49329 * 23 22 21 41 41 H 1.09000 * 110.48749 * 80.85275 * 23 22 21 42 42 H 1.09001 * 110.04830 * 0.06644 * 24 20 19 43 43 H 1.09003 * 110.04398 * 121.53600 * 24 20 19 44 44 H 1.08999 * 109.60291 * 174.76071 * 25 15 14 45 45 H 1.09001 * 109.59281 * 295.21995 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2181 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6503 -0.0705 -0.0005 7 1 6.1598 -0.9216 -0.4275 8 6 6.3886 0.9818 0.5529 9 7 5.7913 1.8836 1.2896 10 14 8.2264 1.0991 0.2401 11 1 8.4697 1.9019 -0.9851 12 1 8.8850 1.7529 1.3994 13 1 8.7854 -0.2646 0.0575 14 6 3.4738 -1.2109 -0.0005 15 7 4.1075 -2.4378 -0.0010 16 6 3.1728 -3.5128 -0.3589 17 6 2.2254 -3.7734 0.7779 18 8 1.2000 -4.3808 0.5532 19 7 2.4673 -3.3617 2.0280 20 6 3.6525 -2.5931 2.3893 21 6 3.2761 -1.1114 2.5806 22 6 3.0539 -0.9712 4.1075 23 6 4.1564 -1.8844 4.6993 24 6 4.2113 -3.0865 3.7332 25 6 4.7239 -2.7138 1.3072 26 7 2.1524 -1.1511 -0.0054 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6364 2.1399 0.0006 31 1 4.1136 2.1486 -0.0001 32 1 6.3030 2.6127 1.6735 33 1 2.6056 -3.2194 -1.2422 34 1 3.7337 -4.4216 -0.5775 35 1 1.8275 -3.5836 2.7224 36 1 4.0904 -0.4653 2.2526 37 1 2.3599 -0.8772 2.0386 38 1 2.0636 -1.3298 4.3882 39 1 3.1944 0.0611 4.4280 40 1 3.8822 -2.2129 5.7018 41 1 5.1142 -1.3644 4.7159 42 1 3.5977 -3.9020 4.1162 43 1 5.2417 -3.4199 3.6096 44 1 5.1361 -3.7229 1.3116 45 1 5.5179 -1.9914 1.4968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158405082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -6.509797 kcal Electronic energy + Delta-G solvation = -29058.899631 eV Core-core repulsion = 25461.301854 eV Total energy + Delta-G solvation = -3597.597776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52686 -40.04979 -38.96466 -37.19759 -36.02379 -34.29782 -32.71617 -31.89383 -30.62756 -29.63745 -29.35303 -27.49039 -26.10711 -24.95001 -22.99833 -22.37574 -21.81659 -21.35910 -19.88649 -19.13538 -18.24792 -17.83560 -17.26964 -16.93898 -16.41228 -16.04945 -15.61772 -15.53677 -15.45741 -15.18909 -14.56131 -14.46761 -14.29962 -14.20219 -13.80058 -13.39967 -13.19376 -13.10838 -13.04722 -12.85500 -12.65467 -12.62040 -12.49896 -12.32656 -12.11921 -12.09547 -11.88444 -11.68055 -11.49782 -11.38880 -11.29561 -11.00303 -10.19102 -9.95727 -9.84124 -9.65356 -8.76756 -8.46933 -6.21224 0.82436 1.11447 1.47578 1.56165 1.57891 1.74154 2.25535 2.33621 2.80460 3.03018 3.56514 3.64319 3.73145 3.78563 3.94149 4.02028 4.29361 4.38463 4.41625 4.47855 4.56966 4.58397 4.66665 4.68058 4.79070 4.83257 4.90311 4.96387 4.98790 4.99864 5.05204 5.09513 5.19106 5.21238 5.30958 5.31870 5.37415 5.47867 5.60325 5.71191 5.85374 5.92342 6.07889 6.20016 6.38243 6.46542 6.75370 6.90264 7.05294 7.30908 7.79612 8.36006 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.007174 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.808671 B = 3902.075258 C = 4531.743159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.005 4.005 3 C -0.158 4.158 4 C -0.149 4.149 5 C 0.068 3.932 6 C -0.448 4.448 7 H 0.087 0.913 8 C 0.043 3.957 9 N -0.814 5.814 10 Si 0.970 3.030 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.254 1.254 14 C 0.178 3.822 15 N -0.452 5.452 16 C 0.056 3.944 17 C 0.520 3.480 18 O -0.609 6.609 19 N -0.693 5.693 20 C 0.142 3.858 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.117 4.117 25 C 0.053 3.947 26 N -0.497 5.497 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.287 0.713 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.393 0.607 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -4.262 5.876 7.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 C -0.179 4.179 4 C -0.175 4.175 5 C 0.062 3.938 6 C -0.478 4.478 7 H 0.105 0.895 8 C -0.173 4.173 9 N -0.440 5.440 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.198 1.198 13 H -0.177 1.177 14 C -0.056 4.056 15 N -0.170 5.170 16 C -0.075 4.075 17 C 0.308 3.692 18 O -0.491 6.491 19 N -0.343 5.343 20 C 0.055 3.945 21 C -0.175 4.175 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.074 4.074 26 N -0.210 5.210 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.229 0.771 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.732 -5.067 5.356 7.574 hybrid contribution 0.109 1.440 0.469 1.518 sum 1.841 -3.628 5.825 7.105 Atomic orbital electron populations 1.20274 0.89733 1.01268 1.01234 1.20473 0.95955 0.87961 1.09948 1.21561 0.95058 0.97777 1.03514 1.21540 0.92909 0.98377 1.04672 1.18049 0.94444 0.89934 0.91369 1.19572 0.90867 1.04436 1.32933 0.89497 1.26583 1.04722 0.93802 0.92238 1.69838 1.39955 1.11215 1.22960 0.85352 0.77245 0.79809 0.78383 1.19807 1.19825 1.17731 1.19457 0.87286 0.90197 1.08634 1.59650 1.29362 0.99357 1.28670 1.22113 0.92914 0.96391 0.96048 1.21036 0.86823 0.76180 0.85173 1.90626 1.29171 1.45260 1.84025 1.45601 1.24855 1.54723 1.09099 1.21527 0.85276 0.90938 0.96794 1.23157 1.02373 0.95501 0.96513 1.22485 0.98929 0.99511 0.95159 1.22295 0.98524 0.95348 0.98807 1.22460 1.02519 0.98522 0.92101 1.22807 0.96471 1.03599 0.84484 1.66847 1.09819 1.30392 1.13984 0.92213 0.93739 0.90897 0.86891 0.86879 0.90244 0.89246 0.85558 0.77108 0.91137 0.92240 0.92110 0.92887 0.89644 0.91677 0.89843 0.88984 0.88031 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.45 10.15 71.24 0.72 -1.72 16 2 C -0.01 -0.23 5.62 42.64 0.24 0.01 16 3 C -0.16 -6.98 9.69 22.32 0.22 -6.77 16 4 C -0.15 -7.12 8.77 22.89 0.20 -6.91 16 5 C 0.07 3.21 3.51 -21.06 -0.07 3.13 16 6 C -0.45 -20.57 6.86 23.37 0.16 -20.41 16 7 H 0.09 3.95 7.58 -2.91 -0.02 3.93 16 8 C 0.04 1.86 5.24 85.25 0.45 2.31 16 9 N -0.81 -36.98 10.89 21.83 0.24 -36.74 16 10 Si 0.97 34.04 29.58 68.60 2.03 36.07 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 13 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 14 C 0.18 7.86 3.48 134.05 0.47 8.32 16 15 N -0.45 -17.48 4.45 -705.01 -3.13 -20.62 16 16 C 0.06 2.05 5.52 85.42 0.47 2.52 16 17 C 0.52 20.09 6.27 87.67 0.55 20.64 16 18 O -0.61 -27.37 17.83 -3.03 -0.05 -27.43 16 19 N -0.69 -23.25 4.60 -423.64 -1.95 -25.20 16 20 C 0.14 4.48 0.93 4.25 0.00 4.49 16 21 C -0.14 -5.13 4.06 31.62 0.13 -5.00 16 22 C -0.12 -3.78 6.91 31.91 0.22 -3.56 16 23 C -0.11 -2.72 6.83 31.69 0.22 -2.50 16 24 C -0.12 -2.79 6.20 31.27 0.19 -2.60 16 25 C 0.05 1.77 4.36 86.16 0.38 2.14 16 26 N -0.50 -22.29 6.16 -179.57 -1.11 -23.39 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.11 5.66 6.28 -2.91 -0.02 5.64 16 32 H 0.29 12.02 8.30 -92.71 -0.77 11.25 16 33 H 0.09 3.63 7.71 -2.39 -0.02 3.61 16 34 H 0.13 3.77 8.14 -2.38 -0.02 3.75 16 35 H 0.39 12.43 8.62 -92.71 -0.80 11.63 16 36 H 0.07 3.15 5.50 -2.39 -0.01 3.13 16 37 H 0.06 2.58 4.65 -2.39 -0.01 2.57 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 1.74 7.80 -2.39 -0.02 1.72 16 43 H 0.09 1.91 7.65 -2.39 -0.02 1.89 16 44 H 0.10 2.75 8.06 -2.39 -0.02 2.73 16 45 H 0.10 3.69 6.14 -2.39 -0.01 3.68 16 Total: -1.00 -56.93 340.65 0.79 -56.15 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: 0.22 Total: 47.06 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.54 Total: -5.91 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.95 Total: -105.96 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Total: -56.93 0.79 -56.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158405082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.639 kcal (2) G-P(sol) polarization free energy of solvation -56.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds