Wall clock time and date at job start Tue Mar 31 2020 11:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38169 * 120.50109 * 2 1 4 4 N 1.31803 * 120.89385 * 180.02562 * 3 2 1 5 5 C 1.31827 * 122.05060 * 359.97438 * 4 3 2 6 6 C 1.38126 * 120.89587 * 0.02562 * 5 4 3 7 7 C 1.39806 * 120.49960 * 180.02562 * 2 1 3 8 8 C 1.48150 * 120.91777 * 0.02562 * 7 2 1 9 9 O 1.21510 * 120.00311 * 353.68613 * 8 7 2 10 10 N 1.34784 * 119.99556 * 173.69613 * 8 7 2 11 11 C 1.46497 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47118 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.29462 * 117.69547 * 94.99929 * 13 12 11 15 15 C 1.50319 * 123.65103 * 180.86158 * 14 13 12 16 16 N 1.47007 * 109.16567 * 349.01814 * 15 14 13 17 17 C 1.36939 * 121.37125 * 222.96607 * 16 15 14 18 18 H 1.08002 * 119.99496 * 152.96402 * 17 16 15 19 19 C 1.38802 * 120.00622 * 332.96918 * 17 16 15 20 20 N 1.31619 * 119.99907 * 349.13494 * 19 17 16 21 21 Si 1.86798 * 120.00456 * 169.14068 * 19 17 16 22 22 H 1.48502 * 109.47282 * 59.99211 * 21 19 17 23 23 H 1.48497 * 109.47575 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46892 * 299.99811 * 21 19 17 25 25 C 1.47340 * 117.24800 * 42.95368 * 16 15 14 26 26 C 1.49967 * 117.69447 * 274.73871 * 13 12 11 27 27 H 1.08995 * 109.47272 * 263.69149 * 1 2 3 28 28 H 1.08996 * 109.46669 * 23.69167 * 1 2 3 29 29 H 1.09005 * 109.46928 * 143.68739 * 1 2 3 30 30 H 1.07992 * 119.55280 * 0.04141 * 3 2 1 31 31 H 1.07998 * 119.55381 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.49787 * 179.97438 * 6 5 4 33 33 H 0.96991 * 119.99930 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.47115 * 299.99408 * 11 10 8 35 35 H 1.09000 * 109.47620 * 59.99145 * 11 10 8 36 36 H 1.08993 * 109.47185 * 299.99606 * 12 11 10 37 37 H 1.09003 * 109.47280 * 60.00060 * 12 11 10 38 38 H 1.08000 * 118.17089 * 0.88249 * 14 13 12 39 39 H 1.08999 * 109.52222 * 108.92662 * 15 14 13 40 40 H 1.09005 * 109.51935 * 229.11369 * 15 14 13 41 41 H 0.96998 * 120.00253 * 180.02562 * 20 19 17 42 42 H 1.08991 * 109.78035 * 57.80814 * 25 16 15 43 43 H 1.09003 * 109.77587 * 178.61743 * 25 16 15 44 44 H 1.09000 * 109.31615 * 281.28946 * 26 13 12 45 45 H 1.08999 * 109.31661 * 40.71848 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5263 1.1995 -0.0005 5 6 4.2335 0.0870 -0.0005 6 6 3.6137 -1.1474 -0.0006 7 6 2.2166 -1.2046 -0.0005 8 6 1.5078 -2.5056 -0.0017 9 8 0.2986 -2.5388 0.1135 10 7 2.2043 -3.6523 -0.1304 11 6 1.5034 -4.9387 -0.1321 12 6 2.5185 -6.0723 -0.2914 13 6 1.7976 -7.3957 -0.2925 14 6 1.4869 -7.9107 -1.4389 15 6 0.7522 -9.2126 -1.5956 16 7 0.6963 -9.8949 -0.2946 17 6 0.9253 -11.2405 -0.1849 18 1 1.3080 -11.6496 0.7385 19 6 0.6655 -12.0788 -1.2603 20 7 0.0044 -11.6248 -2.3039 21 14 1.2541 -13.8513 -1.2265 22 1 0.6442 -14.5534 -0.0687 23 1 0.8523 -14.5305 -2.4844 24 1 2.7334 -13.8793 -1.0989 25 6 0.3841 -9.0709 0.8863 26 6 1.4960 -8.0262 1.0343 27 1 -0.3633 -0.1129 1.0214 28 1 -0.3632 0.9410 -0.4129 29 1 -0.3633 -0.8281 -0.6086 30 1 1.6692 2.1262 0.0007 31 1 5.3121 0.1415 -0.0005 32 1 4.1994 -2.0548 -0.0010 33 1 3.1694 -3.6257 -0.2226 34 1 0.9663 -5.0611 0.8085 35 1 0.7958 -4.9659 -0.9607 36 1 3.0553 -5.9498 -1.2320 37 1 3.2263 -6.0453 0.5371 38 1 1.7718 -7.3751 -2.3325 39 1 -0.2605 -9.0191 -1.9492 40 1 1.2761 -9.8422 -2.3148 41 1 -0.1774 -12.2106 -3.0553 42 1 -0.5766 -8.5755 0.7468 43 1 0.3498 -9.6997 1.7761 44 1 2.3965 -8.5049 1.4191 45 1 1.1733 -7.2558 1.7346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160043250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:09 Heat of formation + Delta-G solvation = 32.975794 kcal Electronic energy + Delta-G solvation = -25061.291255 eV Core-core repulsion = 21465.405702 eV Total energy + Delta-G solvation = -3595.885553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.08211 -39.34710 -37.91869 -35.67555 -33.81566 -33.73772 -32.51015 -31.30094 -29.86434 -28.85183 -27.62968 -25.68148 -24.68855 -23.22062 -22.68603 -22.20831 -21.17293 -20.79898 -18.39043 -17.62208 -17.13731 -16.11997 -15.90179 -15.69462 -15.59544 -15.37605 -15.07443 -14.64543 -14.12159 -13.90001 -13.84337 -13.76701 -13.57768 -13.31437 -12.97852 -12.75480 -12.56026 -12.25964 -12.06552 -11.91333 -11.60863 -11.44728 -11.05575 -10.88022 -10.75411 -10.53517 -10.34265 -10.24147 -10.24085 -9.84331 -9.70242 -9.54183 -9.40224 -9.21459 -8.66915 -7.94651 -6.68679 -5.78907 -3.21708 0.32858 0.64482 2.59783 2.69335 3.02220 3.37984 3.42974 3.43155 3.44108 3.98356 4.19530 4.31144 4.41219 4.48584 4.56349 4.93418 5.04804 5.08036 5.21079 5.23339 5.30937 5.39491 5.40676 5.47851 5.52912 5.60900 5.70724 5.74470 5.93651 5.95856 6.05388 6.12495 6.18354 6.21422 6.25959 6.37864 6.54852 6.78465 6.90398 7.17152 7.23038 7.32719 7.40093 7.47702 7.74562 7.87247 7.88655 8.41097 9.21095 9.82584 10.42621 11.31288 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.002095 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.036217 B =13361.804386 C =13609.988528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C 0.093 3.907 4 N -0.467 5.467 5 C 0.085 3.915 6 C -0.137 4.137 7 C -0.093 4.093 8 C 0.553 3.447 9 O -0.521 6.521 10 N -0.721 5.721 11 C 0.124 3.876 12 C -0.092 4.092 13 C -0.144 4.144 14 C -0.145 4.145 15 C 0.197 3.803 16 N -0.596 5.596 17 C -0.247 4.247 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.911 5.911 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.143 3.857 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.139 0.861 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 23.278 3.941 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.065 4.065 4 N -0.176 5.176 5 C -0.071 4.071 6 C -0.158 4.158 7 C -0.104 4.104 8 C 0.340 3.660 9 O -0.398 6.398 10 N -0.373 5.373 11 C 0.001 3.999 12 C -0.130 4.130 13 C -0.145 4.145 14 C -0.165 4.165 15 C 0.072 3.928 16 N -0.319 5.319 17 C -0.376 4.376 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.016 3.984 26 C -0.130 4.130 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.824 23.881 3.869 25.136 hybrid contribution 0.537 -1.704 -0.167 1.795 sum 7.361 22.176 3.702 23.658 Atomic orbital electron populations 1.21005 0.88890 1.03580 1.04020 1.21163 0.98562 0.92424 0.95756 1.22773 0.89737 0.97455 0.96524 1.67552 1.08350 1.31837 1.09832 1.22724 1.00615 0.87207 0.96526 1.22358 0.93852 1.00275 0.99291 1.20303 0.93805 0.94000 1.02316 1.18156 0.87045 0.83545 0.77276 1.90764 1.13416 1.86971 1.48667 1.46033 1.11005 1.06287 1.73946 1.21519 0.95254 0.80052 1.03043 1.20915 0.97073 0.92878 1.02103 1.20208 1.03280 0.95051 0.95927 1.23161 0.97863 0.99451 0.95997 1.19707 0.96573 0.87615 0.88895 1.44097 1.81679 1.04399 1.01719 1.19124 1.36349 0.82232 0.99902 0.91589 1.25090 0.98676 0.97934 0.98117 1.69968 1.42090 1.35516 1.08018 0.86302 0.78524 0.84602 0.76903 1.20902 1.21611 1.21074 1.20997 0.93844 0.92114 0.91423 1.20793 1.00559 0.98051 0.93602 0.90216 0.91760 0.88514 0.82063 0.82100 0.84290 0.76639 0.90916 0.90949 0.91485 0.91418 0.89102 0.94355 0.89188 0.93544 0.95794 0.92561 0.91940 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.84 36.01 0.32 -0.73 16 2 C -0.08 -0.71 5.93 -104.06 -0.62 -1.33 16 3 C 0.09 0.78 10.83 -17.59 -0.19 0.59 16 4 N -0.47 -4.31 10.34 -13.31 -0.14 -4.45 16 5 C 0.09 0.63 11.17 -17.59 -0.20 0.44 16 6 C -0.14 -1.00 9.60 -39.03 -0.37 -1.37 16 7 C -0.09 -0.90 5.91 -104.64 -0.62 -1.52 16 8 C 0.55 6.43 7.73 -12.19 -0.09 6.34 16 9 O -0.52 -7.68 13.54 5.36 0.07 -7.60 16 10 N -0.72 -7.17 5.51 -61.15 -0.34 -7.50 16 11 C 0.12 1.50 5.66 -4.05 -0.02 1.48 16 12 C -0.09 -1.12 5.32 -27.88 -0.15 -1.27 16 13 C -0.14 -2.40 5.11 -100.99 -0.52 -2.92 16 14 C -0.15 -2.75 9.47 -35.78 -0.34 -3.09 16 15 C 0.20 4.71 5.18 -5.10 -0.03 4.68 16 16 N -0.60 -15.02 3.00 -173.56 -0.52 -15.54 16 17 C -0.25 -6.77 9.70 -15.06 -0.15 -6.91 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.00 -0.01 5.10 -17.43 -0.09 -0.09 16 20 N -0.91 -26.30 11.02 55.49 0.61 -25.69 16 21 Si 0.91 21.67 29.57 -169.99 -5.03 16.64 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.14 3.00 6.59 -3.43 -0.02 2.97 16 26 C -0.09 -1.57 5.95 -28.09 -0.17 -1.74 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.41 8.06 -51.93 -0.42 0.00 16 29 H 0.10 1.07 5.95 -51.93 -0.31 0.76 16 30 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.14 0.61 6.59 -52.48 -0.35 0.27 16 33 H 0.40 2.79 6.65 -40.82 -0.27 2.52 16 34 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.76 7.78 -51.93 -0.40 0.35 16 37 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.09 1.52 7.73 -52.49 -0.41 1.11 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 2.38 6.49 -51.93 -0.34 2.05 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -32.37 366.92 -9.73 -42.11 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.67 Total: 0.99 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.25 Total: -4.48 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.38 Total: -53.18 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.07 Total: -7.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.37 -9.73 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160043250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.082 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds