Wall clock time and date at job start Tue Mar 31 2020 10:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38942 * 119.67806 * 2 1 4 4 C 1.36431 * 120.61719 * 179.97438 * 3 2 1 5 5 C 1.40108 * 119.82990 * 0.02562 * 4 3 2 6 6 C 1.41586 * 133.37864 * 180.02562 * 5 4 3 7 7 C 1.35865 * 107.72573 * 179.97438 * 6 5 4 8 8 C 1.47063 * 125.42954 * 179.97438 * 7 6 5 9 9 O 1.21653 * 120.00015 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99997 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27721 * 10 8 7 12 12 H 1.09004 * 109.47372 * 34.71852 * 11 10 8 13 13 C 1.52997 * 109.47036 * 274.72131 * 11 10 8 14 14 C 1.52999 * 109.46963 * 154.72290 * 11 10 8 15 15 C 1.52997 * 109.47080 * 294.99494 * 14 11 10 16 16 N 1.46503 * 109.47297 * 180.02562 * 15 14 11 17 17 C 1.36935 * 120.00080 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00128 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00038 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47162 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47345 * 120.00013 * 21 19 17 24 24 H 1.48497 * 109.47349 * 240.00296 * 21 19 17 25 25 N 1.38141 * 109.14038 * 0.22641 * 7 6 5 26 26 H 0.96998 * 125.60400 * 179.74439 * 25 7 6 27 27 C 1.37483 * 108.78827 * 359.62363 * 25 7 6 28 28 C 1.37669 * 119.67147 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46631 * 270.02155 * 1 2 3 30 30 H 1.09002 * 109.47441 * 30.01564 * 1 2 3 31 31 H 1.08999 * 109.47509 * 150.02134 * 1 2 3 32 32 H 1.08005 * 119.69109 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.08648 * 179.97438 * 4 3 2 34 34 H 1.08000 * 126.13536 * 0.02562 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47293 * 60.00168 * 13 11 10 37 37 H 1.09003 * 109.47189 * 180.02562 * 13 11 10 38 38 H 1.09009 * 109.47238 * 300.00198 * 13 11 10 39 39 H 1.08997 * 109.47492 * 54.99915 * 14 11 10 40 40 H 1.09007 * 109.47243 * 174.99697 * 14 11 10 41 41 H 1.09002 * 109.47641 * 299.99883 * 15 14 11 42 42 H 1.08998 * 109.46968 * 60.00255 * 15 14 11 43 43 H 0.96998 * 119.99912 * 359.97438 * 16 15 14 44 44 H 0.97003 * 120.00102 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.09732 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2295 0.0005 5 6 4.2758 0.0257 0.0005 6 6 5.6575 -0.2834 0.0014 7 6 5.7787 -1.6367 0.0015 8 6 7.0483 -2.3789 0.0018 9 8 8.1051 -1.7765 0.0025 10 7 7.0409 -3.7267 0.0013 11 6 8.3056 -4.4661 0.0077 12 1 9.0425 -3.9204 0.5971 13 6 8.8133 -4.6205 -1.4272 14 6 8.0842 -5.8497 0.6221 15 6 7.6967 -5.6980 2.0943 16 7 7.4853 -7.0229 2.6828 17 6 7.1279 -7.1381 3.9996 18 1 7.0023 -6.2523 4.6046 19 6 6.9272 -8.3935 4.5570 20 7 7.0808 -9.4730 3.8199 21 14 6.4403 -8.5508 6.3535 22 1 6.3338 -7.1984 6.9578 23 1 5.1293 -9.2412 6.4526 24 1 7.4701 -9.3376 7.0784 25 7 4.5193 -2.2042 -0.0045 26 1 4.3284 -3.1552 -0.0093 27 6 3.5808 -1.1995 0.0001 28 6 2.1885 -1.1962 0.0005 29 1 -0.3633 0.0004 1.0278 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6446 2.1365 -0.0004 33 1 4.0851 2.1727 0.0001 34 1 6.4695 0.4287 0.0028 35 1 6.1982 -4.2070 0.0011 36 1 8.9710 -3.6348 -1.8649 37 1 9.7541 -5.1710 -1.4225 38 1 8.0764 -5.1661 -2.0167 39 1 7.2844 -6.3613 0.0867 40 1 9.0026 -6.4321 0.5462 41 1 8.4965 -5.1865 2.6298 42 1 6.7784 -5.1157 2.1701 43 1 7.5978 -7.8185 2.1394 44 1 6.9409 -10.3503 4.2094 45 1 1.6447 -2.1293 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699121759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:20 Heat of formation + Delta-G solvation = 16.241510 kcal Electronic energy + Delta-G solvation = -25040.437753 eV Core-core repulsion = 21443.826548 eV Total energy + Delta-G solvation = -3596.611206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77438 -39.66925 -37.50002 -36.56844 -34.44966 -32.95955 -32.07071 -31.06489 -30.51130 -29.57462 -27.94120 -26.83787 -24.27840 -23.60200 -22.36050 -21.59937 -21.14153 -20.70284 -20.17597 -18.63182 -17.13727 -17.04826 -16.15744 -15.88395 -15.44189 -15.12051 -14.78100 -14.39666 -14.21636 -14.07853 -14.01053 -13.69064 -13.59813 -13.43104 -13.36014 -12.96355 -12.86388 -12.47500 -12.40934 -11.98768 -11.89355 -11.44302 -11.27946 -11.13829 -11.09276 -10.85864 -10.72313 -10.62309 -10.18417 -10.05919 -10.01294 -9.75685 -9.18602 -8.92175 -8.41123 -7.93404 -6.98061 -5.81770 -3.10823 0.56580 1.39538 1.93108 2.69172 3.01112 3.24607 3.39984 3.46189 3.48236 3.64589 4.41298 4.51280 4.57696 4.62897 4.84584 4.88884 4.95747 5.12364 5.15319 5.19227 5.27266 5.33368 5.38878 5.46574 5.49991 5.60493 5.65249 5.67152 5.74051 5.85506 5.86638 5.95142 6.13617 6.20488 6.25278 6.25769 6.27148 6.39291 6.43995 6.47868 6.73380 6.78580 6.85278 7.13582 7.39861 7.66312 8.03656 8.37172 9.48500 10.05336 10.40083 11.41132 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010969 B = 0.002920 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.122512 B = 9587.575956 C =11441.932564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.057 4.057 3 C -0.149 4.149 4 C -0.057 4.057 5 C -0.124 4.124 6 C -0.109 4.109 7 C 0.019 3.981 8 C 0.584 3.416 9 O -0.525 6.525 10 N -0.715 5.715 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.161 4.161 14 C -0.136 4.136 15 C 0.154 3.846 16 N -0.734 5.734 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 N -0.577 5.577 26 H 0.419 0.581 27 C 0.118 3.882 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.394 19.126 -13.394 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.090 4.090 8 C 0.370 3.630 9 O -0.401 6.401 10 N -0.366 5.366 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.220 4.220 14 C -0.174 4.174 15 C 0.026 3.974 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 N -0.181 5.181 26 H 0.257 0.743 27 C 0.008 3.992 28 C -0.155 4.155 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.589 19.410 -13.219 25.006 hybrid contribution -0.761 -1.288 0.898 1.745 sum -9.350 18.122 -12.322 23.825 Atomic orbital electron populations 1.20799 0.90910 1.02811 1.02495 1.19610 0.95831 0.92222 0.98243 1.20514 0.93928 0.97379 1.04981 1.20382 0.93654 0.96250 0.97328 1.18198 0.93046 0.92906 1.08721 1.20891 0.95397 0.93187 1.04070 1.20213 0.84053 0.93435 1.11293 1.17185 0.87099 0.82006 0.76751 1.90839 1.30614 1.68524 1.50100 1.46041 1.10267 1.05678 1.74624 1.21056 0.85262 0.92717 0.96853 0.88929 1.22168 1.01507 1.02158 0.96128 1.22083 1.03048 0.94650 0.97600 1.20633 0.97220 0.89400 0.90134 1.42368 1.83657 1.01837 1.09945 1.19273 1.38475 0.92364 0.87002 0.91197 1.24749 1.02634 0.95391 0.98225 1.69667 1.56225 0.97085 1.35264 0.86116 0.77786 0.77478 0.84832 1.20522 1.21824 1.21759 1.41966 1.04100 1.08227 1.63832 0.74277 1.18288 0.90777 0.87657 1.02498 1.19921 0.89754 0.98490 1.07320 0.90976 0.91376 0.91532 0.85939 0.85703 0.82707 0.76955 0.92242 0.91256 0.92523 0.91389 0.89935 0.96267 0.96640 0.78308 0.93525 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.99 36.01 0.36 -0.33 16 2 C -0.06 -0.50 5.88 -104.57 -0.61 -1.12 16 3 C -0.15 -1.28 9.61 -39.97 -0.38 -1.67 16 4 C -0.06 -0.55 10.06 -39.53 -0.40 -0.95 16 5 C -0.12 -1.44 6.16 -106.93 -0.66 -2.10 16 6 C -0.11 -1.33 10.53 -39.16 -0.41 -1.75 16 7 C 0.02 0.24 6.97 -82.29 -0.57 -0.33 16 8 C 0.58 8.09 7.77 -12.68 -0.10 7.99 16 9 O -0.52 -8.81 16.50 5.23 0.09 -8.73 16 10 N -0.72 -8.79 4.53 -55.00 -0.25 -9.04 16 11 C 0.15 1.90 2.58 -67.93 -0.17 1.72 16 12 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 13 C -0.16 -1.81 9.49 37.16 0.35 -1.46 16 14 C -0.14 -2.01 4.87 -26.73 -0.13 -2.14 16 15 C 0.15 3.02 6.15 -4.04 -0.02 3.00 16 16 N -0.73 -18.40 5.60 -59.91 -0.34 -18.74 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 N -0.58 -6.12 6.07 -7.35 -0.04 -6.17 16 26 H 0.42 3.48 8.12 -40.82 -0.33 3.15 16 27 C 0.12 1.33 7.25 -83.97 -0.61 0.72 16 28 C -0.13 -1.30 9.71 -39.42 -0.38 -1.68 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.40 4.16 7.66 -40.82 -0.31 3.84 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.31 7.75 -51.93 -0.40 -0.09 16 43 H 0.38 10.01 7.67 -40.82 -0.31 9.70 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -33.66 379.42 -9.91 -43.57 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.79 Total: 10.85 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -4.00 Total: -7.50 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.10 Total: -61.33 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.66 -9.91 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699121759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.807 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds