Wall clock time and date at job start Tue Mar 31 2020 10:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38945 * 119.67385 * 2 1 4 4 C 1.36440 * 120.61349 * 180.02562 * 3 2 1 5 5 C 1.40102 * 119.83068 * 359.97438 * 4 3 2 6 6 C 1.41586 * 133.37861 * 179.97438 * 5 4 3 7 7 C 1.35867 * 107.72883 * 179.77804 * 6 5 4 8 8 C 1.47056 * 125.43616 * 180.23691 * 7 6 5 9 9 O 1.21645 * 119.99697 * 0.18554 * 8 7 6 10 10 N 1.34775 * 120.00136 * 180.17898 * 8 7 6 11 11 C 1.46503 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47205 * 325.00961 * 11 10 8 13 13 C 1.53004 * 109.47042 * 85.00406 * 11 10 8 14 14 C 1.52998 * 109.47390 * 205.00432 * 11 10 8 15 15 C 1.52998 * 109.46729 * 65.00043 * 14 11 10 16 16 N 1.46505 * 109.46997 * 179.97438 * 15 14 11 17 17 C 1.36936 * 120.00492 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99464 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00258 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00007 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47406 * 59.99459 * 21 19 17 23 23 H 1.48502 * 109.47458 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46940 * 299.99745 * 21 19 17 25 25 N 1.38151 * 109.13722 * 0.39758 * 7 6 5 26 26 H 0.97001 * 125.60971 * 179.86618 * 25 7 6 27 27 C 1.37486 * 108.78576 * 359.59522 * 25 7 6 28 28 C 1.37667 * 119.67548 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47012 * 90.00189 * 1 2 3 30 30 H 1.08994 * 109.46911 * 210.00461 * 1 2 3 31 31 H 1.09001 * 109.47215 * 330.00576 * 1 2 3 32 32 H 1.07993 * 119.69109 * 359.97001 * 3 2 1 33 33 H 1.07999 * 120.08520 * 179.97438 * 4 3 2 34 34 H 1.08003 * 126.13754 * 0.04129 * 6 5 4 35 35 H 0.96996 * 120.00104 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.47065 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.46894 * 300.00141 * 13 11 10 38 38 H 1.09000 * 109.46764 * 59.99797 * 13 11 10 39 39 H 1.08995 * 109.46971 * 184.99965 * 14 11 10 40 40 H 1.08994 * 109.46824 * 305.00220 * 14 11 10 41 41 H 1.08996 * 109.47854 * 299.99737 * 15 14 11 42 42 H 1.08994 * 109.47323 * 60.00482 * 15 14 11 43 43 H 0.97000 * 119.99784 * 0.02562 * 16 15 14 44 44 H 0.96997 * 119.99812 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.09530 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2296 -0.0005 5 6 4.2759 0.0258 -0.0005 6 6 5.6576 -0.2832 -0.0014 7 6 5.7789 -1.6365 0.0041 8 6 7.0483 -2.3787 0.0101 9 8 8.1051 -1.7763 0.0139 10 7 7.0410 -3.7265 0.0117 11 6 8.3057 -4.4659 0.0172 12 1 9.0465 -3.9232 -0.5701 13 6 8.8041 -4.6132 1.4562 14 6 8.0884 -5.8526 -0.5917 15 6 7.7104 -5.7081 -2.0672 16 7 7.5029 -7.0359 -2.6505 17 6 7.1551 -7.1578 -3.9693 18 1 7.0333 -6.2749 -4.5794 19 6 6.9580 -8.4159 -4.5217 20 7 7.1060 -9.4917 -3.7781 21 14 6.4842 -8.5821 -6.3210 22 1 7.5435 -7.9795 -7.1696 23 1 6.3347 -10.0195 -6.6628 24 1 5.1981 -7.8794 -6.5611 25 7 4.5194 -2.2041 -0.0005 26 1 4.3284 -3.1551 0.0001 27 6 3.5809 -1.1993 0.0001 28 6 2.1886 -1.1961 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6446 2.1364 -0.0005 33 1 4.0851 2.1729 -0.0009 34 1 6.4695 0.4289 -0.0018 35 1 6.1983 -4.2069 0.0084 36 1 9.7453 -5.1629 1.4602 37 1 8.9589 -3.6253 1.8900 38 1 8.0633 -5.1558 2.0435 39 1 9.0062 -6.4344 -0.5071 40 1 7.2851 -6.3615 -0.0590 41 1 6.7926 -5.1263 -2.1520 42 1 8.5137 -5.1992 -2.5999 43 1 7.6120 -7.8288 -2.1024 44 1 6.9679 -10.3708 -4.1640 45 1 1.6449 -2.1292 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699121761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:22 Heat of formation + Delta-G solvation = -4.722734 kcal Electronic energy + Delta-G solvation = -25038.552436 eV Core-core repulsion = 21441.032152 eV Total energy + Delta-G solvation = -3597.520284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61809 -40.72984 -38.29638 -37.83936 -36.18400 -33.87475 -33.49323 -32.41190 -31.43032 -30.36535 -29.46337 -27.58006 -25.94000 -24.65877 -23.37119 -22.99886 -22.04981 -21.74804 -21.16027 -19.63825 -19.09350 -17.93312 -17.23182 -16.74506 -16.67560 -16.40410 -15.93048 -15.57555 -15.40783 -15.29121 -15.11681 -14.92357 -14.76788 -14.57737 -14.27271 -14.13012 -13.69902 -13.63036 -13.14431 -12.94697 -12.90987 -12.89878 -12.58577 -12.42315 -12.33997 -12.14251 -12.05207 -11.98359 -11.82087 -11.69055 -11.32928 -10.97746 -10.83209 -10.27305 -9.18892 -9.05107 -8.73442 -7.99694 -5.28961 -0.27241 0.65058 1.03634 1.44801 1.47362 1.53779 1.82275 2.02764 2.23511 2.52267 2.89500 3.33770 3.51540 3.67292 3.72862 4.00088 4.00368 4.10876 4.13115 4.30064 4.33076 4.39221 4.47686 4.52295 4.58927 4.68329 4.72100 4.79654 4.83971 4.90024 4.94192 4.95290 5.02644 5.13300 5.22849 5.28766 5.29414 5.39608 5.44256 5.50726 5.54466 5.65477 5.73513 6.11445 6.22845 6.30608 6.46236 6.98133 7.29617 8.04047 8.28525 9.23269 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011010 B = 0.002911 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.431436 B = 9615.663663 C =11458.666219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.066 4.066 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.003 3.997 8 C 0.585 3.415 9 O -0.560 6.560 10 N -0.708 5.708 11 C 0.152 3.848 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.119 4.119 15 C 0.153 3.847 16 N -0.744 5.744 17 C -0.252 4.252 18 H 0.069 0.931 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.972 3.028 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.277 1.277 25 N -0.570 5.570 26 H 0.427 0.573 27 C 0.107 3.893 28 C -0.149 4.149 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.156 0.844 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.020 0.980 42 H 0.007 0.993 43 H 0.376 0.624 44 H 0.253 0.747 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 20.013 13.540 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.169 4.169 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.107 4.107 8 C 0.373 3.627 9 O -0.439 6.439 10 N -0.358 5.358 11 C 0.047 3.953 12 H 0.093 0.907 13 C -0.212 4.212 14 C -0.157 4.157 15 C 0.027 3.973 16 N -0.388 5.388 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.263 4.263 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.203 1.203 25 N -0.176 5.176 26 H 0.267 0.733 27 C -0.004 4.004 28 C -0.170 4.170 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.242 0.758 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.025 0.975 43 H 0.209 0.791 44 H 0.062 0.938 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.498 20.287 13.374 26.470 hybrid contribution -0.274 -1.430 -0.965 1.747 sum -10.772 18.857 12.409 25.012 Atomic orbital electron populations 1.20863 0.88846 1.03957 1.03250 1.20042 0.97394 0.91911 0.96407 1.20887 0.93688 0.98539 1.03743 1.20683 0.94347 0.96352 0.97077 1.18438 0.92793 0.94052 1.09947 1.21064 0.96106 0.93344 1.03803 1.20000 0.84147 0.93527 1.13021 1.17333 0.87146 0.82214 0.76056 1.90809 1.31927 1.69220 1.51975 1.45961 1.10567 1.05345 1.73974 1.20932 0.85233 0.91271 0.97843 0.90714 1.22093 1.02462 1.02153 0.94449 1.21911 1.03534 0.95823 0.94418 1.20759 0.96877 0.86864 0.92815 1.42530 1.83846 1.03455 1.08921 1.19543 1.38128 0.92418 0.88249 0.91261 1.25540 1.03322 0.95169 1.02301 1.69789 1.57552 0.97372 1.36944 0.85245 0.78315 0.76351 0.80051 1.20628 1.21757 1.20313 1.41881 1.03386 1.08684 1.63612 0.73268 1.18593 0.91506 0.87649 1.02648 1.20199 0.89199 0.99734 1.07854 0.90252 0.90831 0.89885 0.83337 0.84003 0.82647 0.75791 0.90102 0.92972 0.91105 0.89642 0.90153 0.96244 0.97460 0.79150 0.93804 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.99 71.24 0.71 -0.34 16 2 C -0.06 -0.86 5.88 -19.83 -0.12 -0.97 16 3 C -0.15 -2.25 9.61 22.02 0.21 -2.03 16 4 C -0.07 -1.19 10.06 22.30 0.22 -0.97 16 5 C -0.15 -3.40 6.16 -21.36 -0.13 -3.53 16 6 C -0.12 -2.91 10.53 22.55 0.24 -2.67 16 7 C 0.00 0.07 6.97 39.91 0.28 0.34 16 8 C 0.59 16.48 7.76 86.56 0.67 17.15 16 9 O -0.56 -19.37 16.50 -4.17 -0.07 -19.44 16 10 N -0.71 -17.16 4.53 -446.14 -2.02 -19.18 16 11 C 0.15 3.88 2.57 44.99 0.12 4.00 16 12 H 0.07 2.22 7.58 -2.38 -0.02 2.20 16 13 C -0.15 -3.25 9.48 71.98 0.68 -2.56 16 14 C -0.12 -3.42 4.87 30.59 0.15 -3.27 16 15 C 0.15 6.01 6.15 86.38 0.53 6.54 16 16 N -0.74 -37.43 5.60 -343.45 -1.92 -39.35 16 17 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 18 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 20 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 21 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 N -0.57 -11.98 6.07 -177.18 -1.08 -13.06 16 26 H 0.43 6.90 8.12 -92.71 -0.75 6.15 16 27 C 0.11 2.34 7.25 39.14 0.28 2.62 16 28 C -0.15 -2.69 9.71 22.37 0.22 -2.47 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.41 8.20 7.66 -92.71 -0.71 7.49 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.02 0.76 7.75 -2.39 -0.02 0.74 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.38 19.75 7.67 -92.71 -0.71 19.04 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -71.88 379.42 1.44 -70.44 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -1.15 Total: 35.77 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 5.37 Total: -5.06 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -4.74 Total: -129.76 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.07 Total: -19.44 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -71.88 1.44 -70.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699121761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.717 kcal (2) G-P(sol) polarization free energy of solvation -71.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds