Wall clock time and date at job start Tue Mar 31 2020 10:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38942 * 119.68903 * 2 1 4 4 C 1.37673 * 120.64523 * 179.97438 * 3 2 1 5 5 C 1.39220 * 119.81085 * 359.97438 * 4 3 2 6 6 N 1.37481 * 133.17923 * 180.02562 * 5 4 3 7 7 H 0.97001 * 125.60687 * 359.72095 * 6 5 4 8 8 C 1.38151 * 108.78760 * 179.97438 * 6 5 4 9 9 C 1.47058 * 125.42927 * 179.97438 * 8 6 5 10 10 O 1.21645 * 119.99849 * 167.76318 * 9 8 6 11 11 N 1.34784 * 119.99866 * 347.76781 * 9 8 6 12 12 C 1.46497 * 119.99904 * 0.87940 * 11 9 8 13 13 C 1.46496 * 119.99753 * 180.88203 * 11 9 8 14 14 C 1.53002 * 109.47286 * 89.99609 * 13 11 9 15 15 H 1.08998 * 109.47422 * 294.99475 * 14 13 11 16 16 C 1.53005 * 109.47134 * 174.99716 * 14 13 11 17 17 N 1.46502 * 109.46854 * 54.99988 * 14 13 11 18 18 C 1.36940 * 119.99820 * 204.99669 * 17 14 13 19 19 H 1.07999 * 119.99839 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99758 * 179.97438 * 18 17 14 21 21 N 1.31614 * 120.00232 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47027 * 60.00342 * 22 20 18 24 24 H 1.48499 * 109.47245 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47290 * 300.00569 * 22 20 18 26 26 C 1.35861 * 109.14115 * 359.97438 * 8 6 5 27 27 C 1.40855 * 119.43058 * 0.02562 * 5 4 3 28 28 C 1.36435 * 119.69444 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47646 * 270.02670 * 1 2 3 30 30 H 1.09003 * 109.47340 * 30.02462 * 1 2 3 31 31 H 1.08994 * 109.46836 * 150.02082 * 1 2 3 32 32 H 1.08002 * 119.68011 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.09294 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.47451 * 83.58722 * 12 11 9 35 35 H 1.09003 * 109.47061 * 203.58360 * 12 11 9 36 36 H 1.08998 * 109.47334 * 323.58191 * 12 11 9 37 37 H 1.09004 * 109.47131 * 209.99861 * 13 11 9 38 38 H 1.09006 * 109.47460 * 329.99390 * 13 11 9 39 39 H 1.08997 * 109.47193 * 180.02562 * 16 14 13 40 40 H 1.09004 * 109.47188 * 300.00244 * 16 14 13 41 41 H 1.09000 * 109.47179 * 60.00070 * 16 14 13 42 42 H 0.97000 * 119.99707 * 25.00361 * 17 14 13 43 43 H 0.97000 * 120.00463 * 179.97438 * 21 20 18 44 44 H 1.08001 * 126.13994 * 180.02562 * 26 8 6 45 45 H 1.08002 * 120.08066 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2300 0.0005 5 6 4.2839 0.0337 0.0016 6 7 5.6266 -0.2618 0.0028 7 1 6.3476 0.3871 -0.0008 8 6 5.7800 -1.6347 0.0041 9 6 7.0655 -2.3489 0.0051 10 8 7.0971 -3.5440 0.2295 11 7 8.2086 -1.6792 -0.2426 12 6 8.1725 -0.2363 -0.4937 13 6 9.4872 -2.3941 -0.2607 14 6 9.7726 -2.8927 -1.6788 15 1 9.0243 -3.6332 -1.9611 16 6 11.1631 -3.5296 -1.7252 17 7 9.7206 -1.7651 -2.6126 18 6 9.4329 -1.9828 -3.9336 19 1 9.2440 -2.9858 -4.2869 20 6 9.3831 -0.9143 -4.8183 21 7 9.6129 0.3079 -4.3876 22 14 8.9900 -1.2112 -6.6201 23 1 7.6483 -1.8369 -6.7375 24 1 8.9973 0.0830 -7.3482 25 1 10.0110 -2.1158 -7.2071 26 6 4.5539 -2.2200 0.0043 27 6 3.5838 -1.1885 0.0016 28 6 2.1829 -1.1852 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 1.6449 2.1364 -0.0004 33 1 4.0976 2.1734 0.0009 34 1 8.1625 0.2977 0.4564 35 1 9.0539 0.0552 -1.0650 36 1 7.2745 0.0117 -1.0594 37 1 10.2843 -1.7211 0.0552 38 1 9.4380 -3.2439 0.4202 39 1 11.3666 -3.8845 -2.7355 40 1 11.9115 -2.7892 -1.4428 41 1 11.2018 -4.3686 -1.0304 42 1 9.8901 -0.8643 -2.2951 43 1 9.5785 1.0546 -5.0058 44 1 4.3548 -3.2815 0.0057 45 1 1.6392 -2.1184 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755598806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:29 Heat of formation + Delta-G solvation = 35.461258 kcal Electronic energy + Delta-G solvation = -26280.119497 eV Core-core repulsion = 22684.341722 eV Total energy + Delta-G solvation = -3595.777775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.74322 -40.72888 -38.28349 -37.96518 -36.01495 -34.05963 -33.25910 -32.35864 -30.77395 -30.09521 -28.64997 -27.63277 -26.82285 -25.73172 -24.17390 -22.54667 -22.10993 -21.39994 -20.75719 -19.34558 -18.61605 -18.37407 -17.28271 -16.97441 -16.56541 -16.13286 -15.85055 -15.67304 -15.51659 -15.22964 -14.96223 -14.68665 -14.61693 -14.16222 -14.09182 -13.90507 -13.83392 -13.76458 -13.22604 -13.12731 -12.88657 -12.81629 -12.76705 -12.55086 -12.47003 -12.25523 -12.04508 -11.89215 -11.77441 -11.65777 -11.28838 -10.97847 -10.89436 -9.79173 -9.09892 -8.97939 -8.72258 -7.95941 -5.20727 -0.23851 0.64376 1.06945 1.43912 1.44841 1.50530 1.74515 2.03360 2.28516 2.53892 2.90501 3.35007 3.38895 3.71685 3.82074 3.95489 4.06759 4.08231 4.09096 4.29028 4.31324 4.35192 4.40094 4.49635 4.62102 4.65702 4.71962 4.76756 4.81572 4.83306 4.94812 4.97525 5.08186 5.12901 5.21025 5.24510 5.29671 5.44571 5.50050 5.54856 5.62469 5.67484 5.77736 6.13433 6.21052 6.28640 6.40767 6.93439 7.35518 8.07319 8.36180 9.26259 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.003897 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.534111 B = 7183.371938 C = 8451.760177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.136 4.136 5 C 0.087 3.913 6 N -0.573 5.573 7 H 0.431 0.569 8 C 0.009 3.991 9 C 0.577 3.423 10 O -0.564 6.564 11 N -0.590 5.590 12 C 0.064 3.936 13 C 0.115 3.885 14 C 0.150 3.850 15 H 0.022 0.978 16 C -0.152 4.152 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.059 0.941 20 C -0.061 4.061 21 N -0.958 5.958 22 Si 0.958 3.042 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.078 4.078 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.152 0.848 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 3.705 13.465 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.156 4.156 5 C -0.023 4.023 6 N -0.187 5.187 7 H 0.279 0.721 8 C -0.101 4.101 9 C 0.366 3.634 10 O -0.444 6.444 11 N -0.320 5.320 12 C -0.079 4.079 13 C -0.007 4.007 14 C 0.041 3.959 15 H 0.040 0.960 16 C -0.212 4.212 17 N -0.367 5.367 18 C -0.369 4.369 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.608 5.608 22 Si 0.788 3.212 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.155 4.155 27 C -0.141 4.141 28 C -0.097 4.097 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.169 0.831 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.644 3.098 13.432 18.705 hybrid contribution 0.624 0.269 -1.387 1.544 sum -12.019 3.367 12.045 17.346 Atomic orbital electron populations 1.20766 0.88911 1.03524 1.03024 1.19765 0.97690 0.92369 1.02261 1.21178 0.92574 0.98805 0.97945 1.20409 0.94516 0.94920 1.05765 1.18814 0.83481 0.96394 1.03611 1.43140 1.06861 1.05683 1.62969 0.72062 1.20010 0.94647 0.83380 1.12032 1.17490 0.82900 0.86144 0.76845 1.90759 1.86594 1.14964 1.52084 1.47587 1.06686 1.09605 1.68090 1.22322 1.04506 0.79418 1.01667 1.21910 0.83957 0.98090 0.96790 1.20809 0.95507 0.89993 0.89608 0.96003 1.22204 0.97628 1.00501 1.00860 1.42482 1.84465 1.05042 1.04704 1.19391 1.38171 0.92790 0.86501 0.92320 1.25242 1.03733 0.95349 1.01123 1.69709 1.58003 0.98181 1.34928 0.85456 0.77777 0.76321 0.81660 1.21593 1.21702 1.20827 1.21005 0.89787 0.99625 1.05051 1.18412 0.94560 0.92167 1.08935 1.20494 0.90757 0.99245 0.99215 0.90360 0.90365 0.91313 0.82573 0.83865 0.89015 0.89684 0.91473 0.88005 0.88866 0.94552 0.92425 0.91253 0.78712 0.94030 0.83075 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.99 71.24 0.71 -0.62 16 2 C -0.12 -2.32 5.84 -20.12 -0.12 -2.44 16 3 C -0.09 -1.58 9.66 22.30 0.22 -1.36 16 4 C -0.14 -2.95 10.08 22.37 0.23 -2.72 16 5 C 0.09 2.42 7.25 39.13 0.28 2.70 16 6 N -0.57 -16.34 5.09 -177.19 -0.90 -17.24 16 7 H 0.43 10.40 4.90 -92.71 -0.45 9.94 16 8 C 0.01 0.32 6.56 39.91 0.26 0.58 16 9 C 0.58 21.50 7.65 86.56 0.66 22.17 16 10 O -0.56 -23.87 16.44 -4.17 -0.07 -23.94 16 11 N -0.59 -19.84 2.73 -851.09 -2.32 -22.17 16 12 C 0.06 1.86 8.38 127.77 1.07 2.93 16 13 C 0.12 3.75 5.03 86.38 0.43 4.18 16 14 C 0.15 6.02 3.20 44.99 0.14 6.16 16 15 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 16 C -0.15 -5.26 9.49 71.98 0.68 -4.58 16 17 N -0.72 -34.65 4.57 -322.93 -1.47 -36.12 16 18 C -0.24 -13.03 9.93 84.03 0.83 -12.20 16 19 H 0.06 3.28 7.83 -2.91 -0.02 3.26 16 20 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 21 N -0.96 -55.01 13.06 21.65 0.28 -54.72 16 22 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 C -0.13 -4.17 10.56 22.55 0.24 -3.93 16 27 C -0.14 -4.00 6.16 -21.36 -0.13 -4.13 16 28 C -0.08 -1.86 9.68 22.30 0.22 -1.65 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.07 0.82 8.07 -2.39 -0.02 0.80 16 32 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.09 1.88 7.66 -2.39 -0.02 1.87 16 35 H 0.08 2.82 5.80 -2.39 -0.01 2.81 16 36 H 0.07 2.10 5.23 -2.39 -0.01 2.09 16 37 H 0.10 2.78 8.07 -2.38 -0.02 2.76 16 38 H 0.09 2.91 7.41 -2.38 -0.02 2.89 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.38 18.28 5.42 -92.71 -0.50 17.78 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.15 4.75 8.06 -2.91 -0.02 4.72 16 45 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -69.76 367.36 3.80 -65.96 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: 0.06 Total: 37.83 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.20 Total: 2.13 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -4.42 Total: -130.25 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.94 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -69.76 3.80 -65.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755598806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.422 kcal (2) G-P(sol) polarization free energy of solvation -69.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds